Your message dated Wed, 04 Jan 2023 21:32:47 +0000
with message-id <e1pdbnp-004uwg...@fasolo.debian.org>
and subject line Bug#1026507: fixed in neuron 7.6.3-2
has caused the Debian Bug report #1026507,
regarding neuron: FTBFS: open: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1026507: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1026507
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: neuron
Version: 7.6.3-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20221220 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[5]: Entering directory '/<<PKGBUILDDIR>>'
> echo "enter install-exec-hook in nrn/Makefile.am"
> enter install-exec-hook in nrn/Makefile.am
> if test "--verbose --home=/<<PKGBUILDDIR>>/debian/tmp/usr" != "no" ; then \
> cd src/nrnpython ; \
> /usr/bin/python3 setup.py install --verbose
> --home=/<<PKGBUILDDIR>>/debian/tmp/usr ;\
> fi
> running install
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34:
> SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and
> pip and other standards-based tools.
> warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146:
> EasyInstallDeprecationWarning: easy_install command is deprecated. Use build
> and pip and other standards-based tools.
> warnings.warn(
> Checking .pth file support in /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/
> /usr/bin/python3 -E -c pass
> TEST FAILED: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/ does NOT support
> .pth files
> bad install directory or PYTHONPATH
>
> You are attempting to install a package to a directory that is not
> on PYTHONPATH and which Python does not read ".pth" files from. The
> installation directory you specified (via --install-dir, --prefix, or
> the distutils default setting) was:
>
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/
>
> and your PYTHONPATH environment variable currently contains:
>
> ''
>
> Here are some of your options for correcting the problem:
>
> * You can choose a different installation directory, i.e., one that is
> on PYTHONPATH or supports .pth files
>
> * You can add the installation directory to the PYTHONPATH environment
> variable. (It must then also be on PYTHONPATH whenever you run
> Python and want to use the package(s) you are installing.)
>
> * You can set up the installation directory to support ".pth" files by
> using one of the approaches described here:
>
>
> https://setuptools.pypa.io/en/latest/deprecated/easy_install.html#custom-installation-locations
>
>
> Please make the appropriate changes for your system and try again.
> running bdist_egg
> running egg_info
> creating /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info
> writing
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/PKG-INFO
> writing dependency_links to
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/dependency_links.txt
> writing top-level names to
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/top_level.txt
> writing manifest file
> '/<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/SOURCES.txt'
> reading manifest file
> '/<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/SOURCES.txt'
> writing manifest file
> '/<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/SOURCES.txt'
> installing library code to build/bdist.linux-x86_64/egg
> running install_lib
> running build_py
> creating build
> creating build/lib.linux-x86_64-cpython-310
> creating build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/__init__.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/doc.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/nonvint_block_supervisor.py
> -> build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/hclass3.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/hclass2.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/psection.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/sections.py ->
> build/lib.linux-x86_64-cpython-310/neuron
> creating build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/xml2nrn.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/metadata.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/rdxml.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/morphml.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/neuroml.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/neuroml/biophysics.py
> -> build/lib.linux-x86_64-cpython-310/neuron/neuroml
> creating build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/test_rxd.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/test_neuron.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/test_all.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/_subclass.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/tests/test_vector.py
> -> build/lib.linux-x86_64-cpython-310/neuron/tests
> creating build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/reaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/plugins.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rate.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/options.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rxdmath.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rxdsection.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/nodelist.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rxdException.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/dimension3.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/initializer.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/species.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/morphology.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/generalizedReaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/section1d.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/gui.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rxd.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/rangevar.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/region.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/node.py ->
> build/lib.linux-x86_64-cpython-310/neuron/rxd
> creating build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/reaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/plugins.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rate.py ->
> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/options.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rxdmath.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rxdsection.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/nodelist.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rxdException.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/dimension3.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/initializer.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/species.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/generalizedReaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/section1d.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/gui.py ->
> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rxd.py ->
> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/multiCompartmentReaction.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/rangevar.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/region.py ->
> build/lib.linux-x86_64-cpython-310/neuron/crxd
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/node.py ->
> build/lib.linux-x86_64-cpython-310/neuron/crxd
> creating build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/setup_threejs.py
> -> build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/plotshape.py
> -> build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/config.py ->
> build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/rangevar.py
> -> build/lib.linux-x86_64-cpython-310/neuron/gui2
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/gui2/utilities.py
> -> build/lib.linux-x86_64-cpython-310/neuron/gui2
> creating build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/setup.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/voxelize2.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/setup_local.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/rxd/geometry3d/surface.py
> -> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d
> creating build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/__init__.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/setup.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/scalarField.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/triangularMesh.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/voxelize2.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/setup_local.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/voxelize.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/neuron/crxd/geometry3d/surface.py
> -> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d
> running build_ext
> building 'neuron.hoc' extension
> creating build/temp.linux-x86_64-cpython-310
> mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g
> -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g
> -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
> -I../.././src/oc -I../oc -I../.././src/nrnmpi -I/usr/include/python3.10 -c
> inithoc.cpp -o build/temp.linux-x86_64-cpython-310/inithoc.o
> mpic++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro
> -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
> build/temp.linux-x86_64-cpython-310/inithoc.o
> ../.././src/sparse13/libsparse13.a ../.././src/sundials/libsundials.a
> -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu
> -L/<<PKGBUILDDIR>>/debian/tmp_iv/usr/lib/x86_64-linux-gnu
> -L/usr/lib/x86_64-linux-gnu -lnrnpython -lnrnoc -loc -lnrniv -livoc -lmemacs
> -lmeschach -lneuron_gnu -lnrnmpi -lscopmath -lreadline -lIVhines -o
> build/lib.linux-x86_64-cpython-310/neuron/hoc.cpython-310-x86_64-linux-gnu.so
> -Wl,-R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu
> -Wl,-R/<<PKGBUILDDIR>>/debian/tmp_iv/usr/lib/x86_64-linux-gnu
> creating build/bdist.linux-x86_64
> creating build/bdist.linux-x86_64/egg
> creating build/bdist.linux-x86_64/egg/neuron
> copying build/lib.linux-x86_64-cpython-310/neuron/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron
> copying
> build/lib.linux-x86_64-cpython-310/neuron/hoc.cpython-310-x86_64-linux-gnu.so
> -> build/bdist.linux-x86_64/egg/neuron
> copying build/lib.linux-x86_64-cpython-310/neuron/doc.py ->
> build/bdist.linux-x86_64/egg/neuron
> creating build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/reaction.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/plugins.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rate.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/options.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rxdmath.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rxdsection.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/nodelist.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rxdException.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/dimension3.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/initializer.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/species.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/generalizedReaction.py
> -> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/section1d.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/gui.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rxd.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> creating build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/__init__.py
> -> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/setup.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/scalarField.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/triangularMesh.py
> -> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/voxelize2.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/setup_local.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/voxelize.py
> -> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/geometry3d/surface.py
> -> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/crxd/multiCompartmentReaction.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/rangevar.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/region.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/crxd/node.py ->
> build/bdist.linux-x86_64/egg/neuron/crxd
> copying build/lib.linux-x86_64-cpython-310/neuron/nonvint_block_supervisor.py
> -> build/bdist.linux-x86_64/egg/neuron
> creating build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/setup_threejs.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/plotshape.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/config.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/rangevar.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/gui2/utilities.py ->
> build/bdist.linux-x86_64/egg/neuron/gui2
> copying build/lib.linux-x86_64-cpython-310/neuron/hclass3.py ->
> build/bdist.linux-x86_64/egg/neuron
> creating build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/reaction.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/plugins.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rate.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/options.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rxdmath.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rxdsection.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/nodelist.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rxdException.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/dimension3.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/initializer.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/species.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/morphology.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/generalizedReaction.py
> -> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/section1d.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/gui.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rxd.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> creating build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/__init__.py
> -> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/setup.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/scalarField.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/triangularMesh.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/voxelize2.py
> -> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/setup_local.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/voxelize.py
> -> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/geometry3d/surface.py
> -> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d
> copying
> build/lib.linux-x86_64-cpython-310/neuron/rxd/multiCompartmentReaction.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/rangevar.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/region.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> copying build/lib.linux-x86_64-cpython-310/neuron/rxd/node.py ->
> build/bdist.linux-x86_64/egg/neuron/rxd
> creating build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/xml2nrn.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/metadata.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/rdxml.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/morphml.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/neuroml.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/neuroml/biophysics.py ->
> build/bdist.linux-x86_64/egg/neuron/neuroml
> copying build/lib.linux-x86_64-cpython-310/neuron/hclass2.py ->
> build/bdist.linux-x86_64/egg/neuron
> copying build/lib.linux-x86_64-cpython-310/neuron/psection.py ->
> build/bdist.linux-x86_64/egg/neuron
> copying build/lib.linux-x86_64-cpython-310/neuron/gui.py ->
> build/bdist.linux-x86_64/egg/neuron
> creating build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/__init__.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/test_rxd.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/test_neuron.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/test_all.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/_subclass.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/tests/test_vector.py ->
> build/bdist.linux-x86_64/egg/neuron/tests
> copying build/lib.linux-x86_64-cpython-310/neuron/sections.py ->
> build/bdist.linux-x86_64/egg/neuron
> byte-compiling build/bdist.linux-x86_64/egg/neuron/__init__.py to
> __init__.cpython-310.pyc
> build/bdist.linux-x86_64/egg/neuron/__init__.py:420: SyntaxWarning: "is" with
> a literal. Did you mean "=="?
> if len(nt_dlls) is 0:
> build/bdist.linux-x86_64/egg/neuron/__init__.py:422: SyntaxWarning: "is" with
> a literal. Did you mean "=="?
> if h.nrnversion(8).find('i686') is 0:
> byte-compiling build/bdist.linux-x86_64/egg/neuron/doc.py to
> doc.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/reaction.py to
> reaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/plugins.py to
> plugins.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rate.py to
> rate.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/options.py to
> options.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rxdmath.py to
> rxdmath.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rxdsection.py to
> rxdsection.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/geometry.py to
> geometry.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/nodelist.py to
> nodelist.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rxdException.py to
> rxdException.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/dimension3.py to
> dimension3.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/initializer.py to
> initializer.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/species.py to
> species.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/generalizedReaction.py to
> generalizedReaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/section1d.py to
> section1d.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/gui.py to
> gui.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rxd.py to
> rxd.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/setup.py
> to setup.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/scalarField.py to
> scalarField.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/triangularMesh.py to
> triangularMesh.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/voxelize2.py to
> voxelize2.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/setup_local.py to
> setup_local.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/voxelize.py to
> voxelize.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/geometry3d/surface.py
> to surface.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/crxd/multiCompartmentReaction.py to
> multiCompartmentReaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/rangevar.py to
> rangevar.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/region.py to
> region.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/crxd/node.py to
> node.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/nonvint_block_supervisor.py to
> nonvint_block_supervisor.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/setup_threejs.py to
> setup_threejs.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/plotshape.py to
> plotshape.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/config.py to
> config.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/rangevar.py to
> rangevar.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui2/utilities.py to
> utilities.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/hclass3.py to
> hclass3.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/reaction.py to
> reaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/plugins.py to
> plugins.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rate.py to
> rate.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/options.py to
> options.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rxdmath.py to
> rxdmath.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rxdsection.py to
> rxdsection.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/geometry.py to
> geometry.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/nodelist.py to
> nodelist.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rxdException.py to
> rxdException.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/dimension3.py to
> dimension3.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/initializer.py to
> initializer.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/species.py to
> species.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/morphology.py to
> morphology.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/generalizedReaction.py
> to generalizedReaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/section1d.py to
> section1d.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/gui.py to
> gui.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rxd.py to
> rxd.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/__init__.py
> to __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/setup.py to
> setup.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/scalarField.py to
> scalarField.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/triangularMesh.py to
> triangularMesh.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/voxelize2.py to
> voxelize2.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/setup_local.py to
> setup_local.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/voxelize.py
> to voxelize.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/geometry3d/surface.py
> to surface.cpython-310.pyc
> byte-compiling
> build/bdist.linux-x86_64/egg/neuron/rxd/multiCompartmentReaction.py to
> multiCompartmentReaction.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/rangevar.py to
> rangevar.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/region.py to
> region.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/rxd/node.py to
> node.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/xml2nrn.py to
> xml2nrn.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/metadata.py to
> metadata.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/rdxml.py to
> rdxml.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/morphml.py to
> morphml.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/neuroml.py to
> neuroml.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/neuroml/biophysics.py to
> biophysics.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/hclass2.py to
> hclass2.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/psection.py to
> psection.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/gui.py to
> gui.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/__init__.py to
> __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/test_rxd.py to
> test_rxd.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/test_neuron.py to
> test_neuron.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/test_all.py to
> test_all.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/_subclass.py to
> _subclass.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/tests/test_vector.py to
> test_vector.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/neuron/sections.py to
> sections.cpython-310.pyc
> creating stub loader for neuron/hoc.cpython-310-x86_64-linux-gnu.so
> byte-compiling build/bdist.linux-x86_64/egg/neuron/hoc.py to
> hoc.cpython-310.pyc
> installing package data to build/bdist.linux-x86_64/egg
> running install_data
> copying ../.././share/lib/python/neuron/help_data.dat ->
> build/bdist.linux-x86_64/egg/neuron
> creating build/bdist.linux-x86_64/egg/EGG-INFO
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/PKG-INFO
> -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/SOURCES.txt
> -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/dependency_links.txt
> -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying
> /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python/NEURON.egg-info/top_level.txt
> -> build/bdist.linux-x86_64/egg/EGG-INFO
> writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
> zip_safe flag not set; analyzing archive contents...
> neuron.__pycache__.__init__.cpython-310: module references __file__
> neuron.__pycache__.doc.cpython-310: module references __file__
> neuron.__pycache__.hoc.cpython-310: module references __file__
> creating dist
> creating 'dist/NEURON-7.6-py3.10-linux-x86_64.egg' and adding
> 'build/bdist.linux-x86_64/egg' to it
> removing 'build/bdist.linux-x86_64/egg' (and everything under it)
> Processing NEURON-7.6-py3.10-linux-x86_64.egg
> creating
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/NEURON-7.6-py3.10-linux-x86_64.egg
> Extracting NEURON-7.6-py3.10-linux-x86_64.egg to
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/NEURON-7.6-py3.10-linux-x86_64.egg/neuron/__init__.py:420:
> SyntaxWarning: "is" with a literal. Did you mean "=="?
> if len(nt_dlls) is 0:
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/NEURON-7.6-py3.10-linux-x86_64.egg/neuron/__init__.py:422:
> SyntaxWarning: "is" with a literal. Did you mean "=="?
> if h.nrnversion(8).find('i686') is 0:
>
> Installed
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/NEURON-7.6-py3.10-linux-x86_64.egg
> Processing dependencies for NEURON==7.6
> Finished processing dependencies for NEURON==7.6
> if test "no" != "no" ; then \
> sh bin/nrndiagnose.sh ; \
> fi
> echo "leave install-exec-hook in nrn/Makefile.am"
> leave install-exec-hook in nrn/Makefile.am
> make[5]: Leaving directory '/<<PKGBUILDDIR>>'
> /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu'
> /usr/bin/install -c -m 644 nrnconf.h
> '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu'
> /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn'
> /usr/bin/install -c libtool '/<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn'
> make[4]: Leaving directory '/<<PKGBUILDDIR>>'
> make[3]: Leaving directory '/<<PKGBUILDDIR>>'
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/ivhines/
> cp -a /<<PKGBUILDDIR>>/debian/tmp_iv/usr/lib/x86_64-linux-gnu/*.so.*
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/ivhines/
> # the .la files are needed by nrnivmodl and possibly other tools compiling
> NEURON models
> sed -i "/dependency_libs/ s/'.*'/''/" `find
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/ -name '*.la'`
> # duplicates and arch-dependent
> rm -r /<<PKGBUILDDIR>>/debian/tmp/usr/share/nrn/lib/python
> # don't ship these extra binaries
> rm /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/memacs
> rm /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/neurondemo
> # remove (unneeded? misplaced?) header
> rm /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/nrnconf.h
> # fix Python interface location
> mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3/dist-packages/
> mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/*
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3/dist-packages/
> rmdir /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python/
> # add links to important NEURON binaries
> mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
> ln -s /usr/lib/neuron/bin/nrngui /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
> ln -s /usr/lib/neuron/bin/nrniv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
> ln -s /usr/lib/neuron/bin/nrnoc /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
> ln -s /usr/lib/neuron/bin/nrnivmodl /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
> # fix permissions
> chmod -x /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/*_makefile
> # fix rpaths
> chrpath -r /usr/lib/x86_64-linux-gnu/ivhines/
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/ivoc
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/ivoc:
> RUNPATH=/<<PKGBUILDDIR>>/debian/tmp_iv/usr/lib/x86_64-linux-gnu
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/ivoc: new RUNPATH:
> /usr/lib/x86_64-linux-gnu/ivhines/
> chrpath -r /usr/lib/x86_64-linux-gnu/ivhines/
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/nrniv
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/nrniv:
> RUNPATH=/<<PKGBUILDDIR>>/debian/tmp_iv/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/neuron/bin/nrniv: new RUNPATH:
> /usr/lib/x86_64-linux-gnu/ivhines/
> chrpath -r /usr/lib/x86_64-linux-gnu/ivhines/
> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3/dist-packages/neuron/hoc.cpython*.so
> open: No such file or directory
> elf_open: Invalid argument
> make[1]: *** [debian/rules:70: override_dh_auto_install] Error 1
The full build log is available from:
http://qa-logs.debian.net/2022/12/20/neuron_7.6.3-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: neuron
Source-Version: 7.6.3-2
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
neuron, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1026...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated neuron package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 03 Jan 2023 23:03:27 +0100
Source: neuron
Architecture: source
Version: 7.6.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1026507
Changes:
neuron (7.6.3-2) unstable; urgency=medium
.
* Team upload.
* d/watch: update to match new upstream release pages.
* d/rules: fix chrpath invocation on python objects. (Closes: #1026507)
* d/gbp.conf: declare no pristine tar support.
* d/*.lintian-overrides: refresh RUNPATH overrides.
* d/control: declare compliance to standards version 4.6.2.
Checksums-Sha1:
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bd7342395fd977b9bb7e8f6186b287afe08d4182 13248 neuron_7.6.3-2.debian.tar.xz
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Checksums-Sha256:
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neuron_7.6.3-2.dsc
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neuron_7.6.3-2_amd64.buildinfo
Files:
103d9ce1691986ac3693ba52a04d2823 2464 science optional neuron_7.6.3-2.dsc
09a8efadb7a851aba596608c641ad780 13248 science optional
neuron_7.6.3-2.debian.tar.xz
e16b2a5f9dd6b1cff6dc5ff2f02ec289 10427 science optional
neuron_7.6.3-2_amd64.buildinfo
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