Your message dated Sat, 15 Jul 2023 13:36:00 +0000 with message-id <e1qkfri-003btk...@fasolo.debian.org> and subject line Bug#1037702: fixed in jellyfish 2.3.0-16 has caused the Debian Bug report #1037702, regarding jellyfish: ftbfs with GCC-13 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1037702: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037702 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:jellyfish Version: 2.3.0-15 Severity: normal Tags: sid trixie User: debian-...@lists.debian.org Usertags: ftbfs-gcc-13 [This bug is targeted to the upcoming trixie release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The severity of this report will be raised before the trixie release. The full build log can be found at: http://qa-logs.debian.net/2023/05/22/logs/jellyfish_2.3.0-15_unstable_gccexp.log The last lines of the build log are at the end of this report. To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-13/porting_to.html [...] # SKIP: 2 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 SKIP: tests/big =============== Skip big test SKIP tests/big.sh (exit status: 77) SKIP: tests/swig_ruby ===================== SKIP tests/swig_ruby.sh (exit status: 77) FAIL: tests/swig_perl ===================== Test test_mer_file.t ok 1 - require jellyfish; ok 2 - Histogram ok 3 - Dump ok 4 - Query identical to read 1..4 Test test_hash_counter.t ok 1 - require jellyfish; ok 2 - mer_dna k ok 3 - Hash size ok 4 - Hash value length not ok 5 - Adding to new mer # Failed test 'Adding to new mer' # at /<<PKGBUILDDIR>>/swig/perl5/t/test_hash_counter.t line 31. not ok 6 - Adding mer to hash # Failed test 'Adding mer to hash' # at /<<PKGBUILDDIR>>/swig/perl5/t/test_hash_counter.t line 48. 1..6 # Looks like you failed 2 tests of 6. FAIL tests/swig_perl.sh (exit status: 2) ============================================================================ Testsuite summary for jellyfish 2.3.0 ============================================================================ # TOTAL: 15 # PASS: 12 # SKIP: 2 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See ./test-suite.log Please report to gmarc...@umd.edu ============================================================================ make[5]: *** [Makefile:2348: test-suite.log] Error 1 make[5]: Leaving directory '/<<PKGBUILDDIR>>' make[4]: *** [Makefile:2456: check-TESTS] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>' make[3]: *** [Makefile:2661: check-am] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: *** [Makefile:2663: check] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_test: error: make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:103: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:22: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: jellyfish Source-Version: 2.3.0-16 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of jellyfish, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1037...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated jellyfish package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 15 Jul 2023 15:11:33 +0200 Source: jellyfish Architecture: source Version: 2.3.0-16 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1037702 Changes: jellyfish (2.3.0-16) unstable; urgency=medium . [ Étienne Mollier ] * d/rules: output report when tests fail. . [ Andreas Tille ] * Standards-Version: 4.6.2 (routine-update) * Rebuild using gcc-13 Closes: #1037702 Checksums-Sha1: cda1f19c060edcf86458a76241e63425f76ec911 3224 jellyfish_2.3.0-16.dsc 6a4e196a20a02c47942490559efc4d61f2c86c2f 15496 jellyfish_2.3.0-16.debian.tar.xz d3b1a2fb6e8383a8315a1d8d088ac22270fb7aa0 11224 jellyfish_2.3.0-16_amd64.buildinfo Checksums-Sha256: 77655075e577ecd95ab88fce2448ca13bbcbea324847ed9fde3597069f40995b 3224 jellyfish_2.3.0-16.dsc 3746ba6ef82f2a4596e0d81fbd8f54b7e5341f17d89288d6a1a2a5f263e05da1 15496 jellyfish_2.3.0-16.debian.tar.xz 7e107677cb67033d70c51aee69fe21ca795bae3a32ce71ec694fe3877fcd4ed2 11224 jellyfish_2.3.0-16_amd64.buildinfo Files: 638bd5e72143b0054ecb0f40f5076ac8 3224 science optional jellyfish_2.3.0-16.dsc da514f92e8a2522597c3acc50e0fa8a1 15496 science optional jellyfish_2.3.0-16.debian.tar.xz 2be43f157f7c253e3737cd9d186e260a 11224 science optional jellyfish_2.3.0-16_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmSynJIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHegBAAmjLpH/YUG1L+N9tFRs1C/9Msie/y4Kd0 UwKcskfaU0uCF/XoKV3jzHbUbYZtl4/1tiwVXhFSxtf5xNkDWg84P1/B+JdZbVBv xDLIqlRQ/VNqxWOyN4Ij8FkUatPxiJjMUSVgfSAqopKAVynLPFzF2cOFQ2QLY4T2 ouCrch6xmqAJQTQJlAI1k6FHigrm01RqHyo+Q96p4P21loGY45DrqznhrLKF70yi upfiOnwQID7CeQMXD2Tv7gNnXTzTpRsiqvUQ6UTDQgGsU0cqVF9lY22WktMl5XNc 2JAILZe569W34nTasOHkpHPf/5MtM9yWJaxYg/SBPMJ5CAY04uX3/ep7hRg6A9kd 9/RNOHPI1bb0BL1Gq1GYF75STauJHE7rIk2JrCDyPBAlN/M3SF6Z/athrnvXLAnJ 8qKOuVzmMkc2HNxaIkO7ctEVr/ooKIRyObZynBglMSRmGqvNc/mrpM4Ouif8WqDU LMdZ2MtAnowuvCvH+uiG1NjjrSHu16O3CaBC2LQl2V9jev+ZoZTs/P5EB1phrJpf TXMZjurr1tcLt1rNndm9sTu2MIHjf1reNc69U+TtfM3w08a8oFBxmVE93yA6RJYN 0d24UpTGwFgiNxEeMxQUgxgWb67qWjMlYvBlnPhHlqL0eHgTpYdfPTgYLbNqA3CT z26NrCFc7xQ= =mU4k -----END PGP SIGNATURE-----
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