Your message dated Wed, 13 Aug 2014 16:00:09 +0000
with message-id <e1xhay9-0002yq...@franck.debian.org>
and subject line Bug#754672: fixed in qiime 1.8.0+dfsg-3
has caused the Debian Bug report #754672,
regarding qiime: FTBFS on kfreebsd-*: SystemError: Platform not supported by
UCLUST
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
754672: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=754672
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: qiime
Version: 1.8.0+dfsg-2
Severity: serious
Justification: FTBFS
Hi,
your package no longer builds on kfreebsd-*:
| Linking FlowgramAli_4frame ...
| cp FlowgramAli_4frame ../../../../scripts/
| make[1]: Leaving directory
`/«BUILDDIR»/qiime-1.8.0+dfsg/qiime/support_files/denoiser/FlowgramAlignment'
| FastTree.c: In function 'PosteriorProfile':
| FastTree.c:4726:11: warning: variable 'fAll' set but not used
[-Wunused-but-set-variable]
| float fAll[128][4];
| ^
| FastTree.c: In function 'PairLogLk':
| FastTree.c:5070:11: warning: variable 'fAll' set but not used
[-Wunused-but-set-variable]
| float fAll[128][4];
| ^
| FastTree.c: In function 'MLPairOptimize':
| FastTree.c:5973:10: warning: variable 'len5' set but not used
[-Wunused-but-set-variable]
| double len5[5];
| ^
| Denoiser built.
| FastTree.c downloaded successfully.
| FastTree built.
| Traceback (most recent call last):
| File "setup.py", line 183, in <module>
| if download_UCLUST():
| File "setup.py", line 140, in download_UCLUST
| raise SystemError, ("Platform not supported by UCLUST")
| SystemError: Platform not supported by UCLUST
| dh_auto_build: python setup.py build --force returned exit code 1
Full build logs:
https://buildd.debian.org/status/fetch.php?pkg=qiime&arch=kfreebsd-amd64&ver=1.8.0%2Bdfsg-2&stamp=1388360126
https://buildd.debian.org/status/fetch.php?pkg=qiime&arch=kfreebsd-i386&ver=1.8.0%2Bdfsg-2&stamp=1388359980
Mraw,
KiBi.
--- End Message ---
--- Begin Message ---
Source: qiime
Source-Version: 1.8.0+dfsg-3
We believe that the bug you reported is fixed in the latest version of
qiime, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 754...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated qiime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 11 Aug 2014 15:57:14 +0200
Source: qiime
Binary: qiime qiime-doc qiime-data
Architecture: source amd64 all
Version: 1.8.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
qiime - Quantitative Insights Into Microbial Ecology
qiime-data - Quantitative Insights Into Microbial Ecology (supporting data)
qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial)
Closes: 731190 742754 754672
Changes:
qiime (1.8.0+dfsg-3) unstable; urgency=medium
.
* cme fix dpkg-control (remove useless Pre-Depends)
* fixed watch file
* king does not (Build-)Depend from libjogl-java any more
Closes: #731190
* debian/patches/prevent_download_on_builds.patch: do not try to download
uclust at package build time
Closes: #754672
* emperor moved from Depends to Suggests since this depencency is not (yet)
fullfilled in Debian. This might make some tests fail but for the moment
there is no better chance to get qiime into the next release
* debian/qiime.links: Remove hack to link to biom-format tools
Closes: #742754
Checksums-Sha1:
29c480139adcb9fc0ca6f591942572edbe4d5549 2218 qiime_1.8.0+dfsg-3.dsc
be513347ae340c75e14f2b636b99af14eca59900 14707836 qiime_1.8.0+dfsg.orig.tar.xz
e7f6b52411a78d1ab775204f63d0ae7544139500 22136 qiime_1.8.0+dfsg-3.debian.tar.xz
bced68890496fbf064f204a5c764d7bd2aa343fa 926042 qiime_1.8.0+dfsg-3_amd64.deb
0617ef0c6de8e5187bf00fcd9850494b68c28a14 7915912 qiime-doc_1.8.0+dfsg-3_all.deb
0b95bc804b1cc1c73b16142076bdaad8910bb78e 1359500
qiime-data_1.8.0+dfsg-3_all.deb
Checksums-Sha256:
68a71879431b8537710887999727b975a62cfc7fcd30660127653afde850e794 2218
qiime_1.8.0+dfsg-3.dsc
cb9572d566a793ebaf47ecca4de0df895a991e97986594554cb927bb48d06a79 14707836
qiime_1.8.0+dfsg.orig.tar.xz
da17ea23bbc31c00248ef70a56a4298e7f28073e2ef4509eacadcdedcba039af 22136
qiime_1.8.0+dfsg-3.debian.tar.xz
51c2a2a2a8717edac7ac8200eccd128df3340dee413e5540886c055eee864d7a 926042
qiime_1.8.0+dfsg-3_amd64.deb
73b2c6bf6a027ad913843fcdb3bd8fb82c2278efe6a06e3ddc15351dbec4cf56 7915912
qiime-doc_1.8.0+dfsg-3_all.deb
d59d753a37c9181183c4a059072888a7fec5f7a7f7a3eb2043b04212017ff728 1359500
qiime-data_1.8.0+dfsg-3_all.deb
Files:
66966a3e2d517fc109d40c1bbba86f16 926042 science optional
qiime_1.8.0+dfsg-3_amd64.deb
66eadc8ba46627ce21168f17cf020911 7915912 doc optional
qiime-doc_1.8.0+dfsg-3_all.deb
afb44da1fcf496363f74d6439b9a69ff 1359500 science optional
qiime-data_1.8.0+dfsg-3_all.deb
3d3bbae972228bbd4f6e4f28aa971cd7 2218 science optional qiime_1.8.0+dfsg-3.dsc
473df753c889c4132331c05496f7e775 14707836 science optional
qiime_1.8.0+dfsg.orig.tar.xz
88e107f190bea633f49fad5a50b45282 22136 science optional
qiime_1.8.0+dfsg-3.debian.tar.xz
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--- End Message ---
