Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

Great - I'm glad that made sense, my email had more typos than usual as I was in a hurry to leave the office earlier. Thanks, Peter On Thu, May 19, 2016 at 4:20 PM, Andreas Tille wrote: > Hi Peter, > > I've just uploaded a package featuring the patch. > > Thanks a lot for

Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

Hi Peter, I've just uploaded a package featuring the patch. Thanks a lot for the quick and helpful response Andreas. On Thu, May 19, 2016 at 03:31:59PM +0100, Peter Cock wrote: > RE: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=824048 > > I've committed this as "fix", > >

Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

RE: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=824048 I've committed this as "fix", https://github.com/biopython/biopython/commit/cb5b8f7cf16dfa9aada8d3c71ab8d588ebf0693f This was a sanity test which failed due to a change in the NCBI output. We don't currently try to parse the plain

Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

Hi Peter On Thu, May 19, 2016 at 12:32:17PM +0100, Peter Cock wrote: > Thanks Andreas, Thanks for your very quick response. > Ah, https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=824048 > > It looks like yet another minor change to the plain text human > readable output with the latest NCBI

Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

Hi Peter, since some time the blastp test fails when building the Debian BioPython package. I've got no answer what might be wrong here. Do you have any idea which is better than deactivating this specific test for the monent which would be the only poor idea I'd have? Please let me know if

Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

On Wed, May 11, 2016 at 05:35:27PM +0100, Chris Lamb wrote: > ... > Bio.PDB.Selection docstring test ... ok > == > FAIL: test_blastp (test_NCBI_BLAST_tools.Pairwise) > Pairwise BLASTP search >