Your message dated Tue, 12 Nov 2019 15:49:47 +0000
with message-id <e1iuyqn-0002p2...@fasolo.debian.org>
and subject line Bug#942063: fixed in libbio-graphics-perl 2.40-4
has caused the Debian Bug report #942063,
regarding libbio-graphics-perl: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
942063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942063
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libbio-graphics-perl
Version: 2.40-3
Severity: serious
Tags: ftbfs sid bullseye
Justification: fails to build from source
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
The package fails its testsuite both during build:
dh_auto_test
perl Build test --verbose 1
# Failed test 'use Bio::Graphics::FeatureFile;'
# at t/BioGraphics.t line 26.
# Tried to use 'Bio::Graphics::FeatureFile'.
# Error: Can't locate Bio/DB/SeqFeature/Store.pm in @INC (you may need to
install the Bio::DB::SeqFeature::Store module) (@INC contains: .
/build/libbio-graphics-perl-2.40/t/../lib
/build/libbio-graphics-perl-2.40/blib/lib
/build/libbio-graphics-perl-2.40/blib/arch /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0 /usr/local/share/perl/5.30.0
/usr/lib/x86_64-linux-gnu/perl5/5.30 /usr/share/perl5
/usr/lib/x86_64-linux-gnu/perl/5.30 /usr/share/perl/5.30
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/FeatureFile.pm line 259.
# BEGIN failed--compilation aborted at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/FeatureFile.pm line 259.
# Compilation failed in require at t/BioGraphics.t line 26.
# BEGIN failed--compilation aborted at t/BioGraphics.t line 26.
Can't locate object method "new" via package "Bio::Graphics::FeatureFile" at
t/BioGraphics.t line 49, <DATA> line 192.
# Looks like your test exited with 255 just after 3.
t/BioGraphics.t ..
1..49
ok 1 - use GD::Image;
not ok 2 - use Bio::Graphics::FeatureFile;
ok 3 - use Bio::Graphics::Panel;
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 47/49 subtests
Can't locate Bio/DB/SeqFeature/Store.pm in @INC (you may need to install the
Bio::DB::SeqFeature::Store module) (@INC contains:
/build/libbio-graphics-perl-2.40/t/../lib
/build/libbio-graphics-perl-2.40/t/../blib/lib
/build/libbio-graphics-perl-2.40/t/../blib/arch
/build/libbio-graphics-perl-2.40/blib/lib
/build/libbio-graphics-perl-2.40/blib/arch /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0 /usr/local/share/perl/5.30.0
/usr/lib/x86_64-linux-gnu/perl5/5.30 /usr/share/perl5
/usr/lib/x86_64-linux-gnu/perl/5.30 /usr/share/perl/5.30
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/FeatureFile.pm line 259.
BEGIN failed--compilation aborted at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/FeatureFile.pm line 259.
Compilation failed in require at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/Wiggle/Loader.pm line
118.
BEGIN failed--compilation aborted at
/build/libbio-graphics-perl-2.40/t/../lib/Bio/Graphics/Wiggle/Loader.pm line
118.
Compilation failed in require at t/Wiggle.t line 16.
BEGIN failed--compilation aborted at t/Wiggle.t line 16.
# Looks like your test exited with 2 before it could output anything.
t/Wiggle.t .......
1..11
Dubious, test returned 2 (wstat 512, 0x200)
Failed 11/11 subtests
Test Summary Report
- -------------------
t/BioGraphics.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 49 tests but ran 3.
t/Wiggle.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 11 tests but ran 0.
Files=2, Tests=3, 1 wallclock secs ( 0.02 usr 0.01 sys + 0.38 cusr 0.05
csys = 0.46 CPU)
Result: FAIL
Failed 2/2 test programs. 1/3 subtests failed.
dh_auto_test: perl Build test --verbose 1 returned exit code 2
and also during autopkgtest, e.g.
https://ci.debian.net/data/autopkgtest/testing/amd64/libb/libbio-graphics-perl/3123490/log.gz
Cheers,
gregor
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--- End Message ---
--- Begin Message ---
Source: libbio-graphics-perl
Source-Version: 2.40-4
We believe that the bug you reported is fixed in the latest version of
libbio-graphics-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 942...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated
libbio-graphics-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 12 Nov 2019 14:05:45 +0100
Source: libbio-graphics-perl
Architecture: source
Version: 2.40-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Closes: 942063
Changes:
libbio-graphics-perl (2.40-4) unstable; urgency=medium
.
* Team upload.
* debhelper-compat 12
* Standards-Version: 4.4.0
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Set fields Upstream-Name, Upstream-Contact in debian/copyright.
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
* Add build-dep on libbio-db-seqfeature-perl which was split from bioperl
(Closes: #942063)
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libbio-graphics-perl_2.40-4.debian.tar.xz
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libbio-graphics-perl_2.40-4_source.buildinfo
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Files:
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libbio-graphics-perl_2.40-4.debian.tar.xz
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