Your message dated Thu, 26 Aug 2021 17:34:47 +0000 with message-id <e1mjjh5-000i2t...@fasolo.debian.org> and subject line Bug#978835: fixed in htslib 1.13+ds-1 has caused the Debian Bug report #978835, regarding htslib: ftbfs with autoconf 2.70 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 978835: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978835 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:htslib Version: 1.10.2-5 Severity: normal Tags: sid bookworm User: d...@debian.org Usertags: ftbfs-ac270 [This bug report is not targeted to the upcoming bullseye release] The package fails to build in a test rebuild on at least amd64 with autoconf 2.70, but succeeds to build with autoconf 2.69. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://qa-logs.debian.net/2020/09/26.ac270/htslib_1.10.2-5_unstable_ac270.log The last lines of the build log are at the end of this report. To build with autoconf 2.70, please install the autoconf package from experimental: apt-get -t=experimental install autoconf [...] PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' PLATFORM='default' PLUGIN_EXT='.so' RANLIB='ranlib' SHELL='/bin/bash' ac_ct_CC='gcc' bindir='${exec_prefix}/bin' build='x86_64-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_plugins='no' exec_prefix='NONE' gcs='' host='' host_alias='unknown-Linux' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' libcurl='' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' oldincludedir='/usr/include' pc_requires='' pdfdir='${docdir}' plugindir='$(libexecdir)/htslib' pluginpath='$(libexecdir)/htslib' prefix='/usr' private_LIBS='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' s3='' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' static_LDFLAGS='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden' static_LIBS='-lpthread -lz -lm' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HTSlib" #define PACKAGE_TARNAME "htslib" #define PACKAGE_VERSION "1.10.2" #define PACKAGE_STRING "HTSlib 1.10.2" #define PACKAGE_BUGREPORT "samtools-h...@lists.sourceforge.net" #define PACKAGE_URL "http://www.htslib.org/"; configure: exit 1 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-libcurl --enable-gcs --enable-s3 returned exit code 1 make[1]: *** [debian/rules:28: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:18: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: htslib Source-Version: 1.13+ds-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of htslib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 978...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated htslib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 26 Aug 2021 18:33:04 +0200 Source: htslib Architecture: source Version: 1.13+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 978835 Changes: htslib (1.13+ds-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * added libhtscodecs-dev as build-dependency * remove htscodecs folder from source tree (following advice by John Marshall - many thanks!) * Builds fine with autoconf > 2.71 (Closes: #978835). . [ Andreas Tille ] * Standards-Version: 4.6.0 (routine-update) * Do not parse d/changelog (routine-update) * Remove constraints unnecessary since buster: + libhts3: Drop versioned constraint on python-pysam in Breaks. Checksums-Sha1: 958e8f7d8d5cb747949523cd9e7b9ffaa35d9fad 2402 htslib_1.13+ds-1.dsc ddbf6c55d6f7e6604f138940cd39ec4538367b97 1370305 htslib_1.13+ds.orig.tar.bz2 8da5ae80fd72857e5c86ab5039dbc1d6f58f54fa 17332 htslib_1.13+ds-1.debian.tar.xz 7f59c4c99bacaa655cd1886047ec98282253d15c 7729 htslib_1.13+ds-1_amd64.buildinfo Checksums-Sha256: 8de46e85380ff528fb4d4bb339889777bcdb2937e20f030019ebbe02dd751300 2402 htslib_1.13+ds-1.dsc dfbad417019169ef28eb3f34f232ece2a3be1442e09f4c968671667e9b2f6ab9 1370305 htslib_1.13+ds.orig.tar.bz2 09e45a20cce8491144d84b8c8c67f6006408bb6d5ef385b84b9cdabcd29f8479 17332 htslib_1.13+ds-1.debian.tar.xz d5f7f625eb3c5bdd6f96be59c4238340c27d5f424a871e4fa51376f628f4edc3 7729 htslib_1.13+ds-1_amd64.buildinfo Files: d4855430fc1c2f0902f0d2905dffb42a 2402 science optional htslib_1.13+ds-1.dsc 097a17f53eff9020d6f0474ba5889541 1370305 science optional htslib_1.13+ds.orig.tar.bz2 aad06f54e18836d1b6b9a76af888140f 17332 science optional htslib_1.13+ds-1.debian.tar.xz 7000ab32d6ffadc034c169a362d192ce 7729 science optional htslib_1.13+ds-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmEny64RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGXhBAAl/vdcYb6jiGDkqX8XrLtNQ9HgC/5qJkr Xmfb81AlAxyWzj+f3uP0tjHKEvK2yt9SMKrSYW8HGeQJfv7seTqORl4U3f6xAO7e +Cwh/3QzrOmRclTzBpomvwdPTEp3v5A5RE78qte7CDFNcSQ9mt0IftJGk+K2Hic6 7w3l1wboFLuZoozpxKjrIgtnRhbVmi9M3FPFNGCRCIdK01o2PEgHuImG1naNYxp6 UCNSKXP3koni/6aEb1a/I8V1V0gATUrD4cN1sg2jfOocci+sY+rCsZpf6wVtIrk/ dcSvIsdZfWEYbADdwsUuZLQ98JuDami32rZMPwX3jTP1MHaMPWejf8CODLPrmg7+ RHLEPcksP3SG9KvX5gcH7Mc6dD9BnPJWMNWn6udb6bBHXEo4X09UMgXDEeUIPvBf cYvpugeSqVRnPhaGdAP+vs2heb+PB+DDAxUMim85H32ISnnW7gjReKrkw+7IuJ96 +lWHudtmeH210nJ+BnhQCqzvOZ2VpvT+My5Dx+NUKaH7KAbgJKMGNMTrfgG05bhb eYxfIZXeJM9WY/ZIOzTw52xK+e9ZzdrmnWwgMrwkza3bHPEB+H4mfiQMGqztRTFw CDRXrh/GFN8crn+9i0a09RG9O6ntx6sTYzwwvOFv86WMeybfQ6H29344xAr+AZ+f BnL7NCyTjsc= =MNAA -----END PGP SIGNATURE-----
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