Hi Lucas,
thanks a lot for all your work on rebuilding the archive on different
architectures. That's really appreciated.
In this specific case I wonder whether your build host has simply
trouble initialising MPI given I find strings like
MPI_ERRORS_ARE_FATAL
Kind regards
Andreas.
Am Sat, Apr 20, 2024 at 03:14:31PM +0200 schrieb Lucas Nussbaum:
> Source: r-cran-metamix
> Version: 0.3-2
> Severity: serious
> Justification: FTBFS
> Tags: trixie sid ftbfs
> User: lu...@debian.org
> Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-armhf
>
> Hi,
>
> During a rebuild of all packages in sid, your package failed to build
> on armhf.
>
>
> Relevant part (hopefully):
> > make[1]: Entering directory '/<>/src'
> > make[1]: Leaving directory '/<>/src'
> > installing to
> > /<>/debian/r-cran-metamix/usr/lib/R/site-library/00LOCK-r-cran-metamix-0.3/00new/metaMix/libs
> > ** R
> > ** data
> > *** moving datasets to lazyload DB
> > ** inst
> > ** byte-compile and prepare package for lazy loading
> > --
> > Sorry! You were supposed to get help about:
> > pmix_init:startup:internal-failure
> > But I couldn't open the help file:
> > /usr/share/pmix/help-pmix-runtime.txt: No such file or directory.
> > Sorry!
> > --
> > [ip-10-84-234-19:2164897] PMIX ERROR: NOT-FOUND in file
> > ../../../../../../../../opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c
> > at line 237
> > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to
> > start a daemon on the local node in file
> > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716
> > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to
> > start a daemon on the local node in file
> > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172
> > --
> > It looks like orte_init failed for some reason; your parallel process is
> > likely to abort. There are many reasons that a parallel process can
> > fail during orte_init; some of which are due to configuration or
> > environment problems. This failure appears to be an internal failure;
> > here's some additional information (which may only be relevant to an
> > Open MPI developer):
> >
> > orte_ess_init failed
> > --> Returned value Unable to start a daemon on the local node (-127)
> > instead of ORTE_SUCCESS
> > --
> > --
> > It looks like MPI_INIT failed for some reason; your parallel process is
> > likely to abort. There are many reasons that a parallel process can
> > fail during MPI_INIT; some of which are due to configuration or environment
> > problems. This failure appears to be an internal failure; here's some
> > additional information (which may only be relevant to an Open MPI
> > developer):
> >
> > ompi_mpi_init: ompi_rte_init failed
> > --> Returned "Unable to start a daemon on the local node" (-127) instead
> > of "Success" (0)
> > --
> > *** An error occurred in MPI_Init
> > *** on a NULL communicator
> > *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
> > ***and potentially your MPI job)
> > [ip-10-84-234-19:2164891] Local abort before MPI_INIT completed completed
> > successfully, but am not able to aggregate error messages, and not able to
> > guarantee that all other processes were killed!
> > ERROR: lazy loading failed for package ‘metaMix’
> > * removing
> > ‘/<>/debian/r-cran-metamix/usr/lib/R/site-library/metaMix’
> > dh_auto_install: error: R CMD INSTALL -l
> > /<>/debian/r-cran-metamix/usr/lib/R/site-library --clean .
> > "--built-timestamp='Sat, 21 Mar 2020 14:53:15 +0100'" returned exit code 1
> > make: *** [debian/rules:4: binary] Error 25
>
>
> The full build log is available from:
> http://qa-logs.debian.net/2024/04/20/r-cran-metamix_0.3-2_unstable-armhf.log
>
> All bugs filed during this archive rebuild are listed at:
> https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lu...@debian.org
> or:
> https://udd.debian.org/bugs/?release=na=ign=7=7=only=ftbfs-20240420=lu...@debian.org=1=1=1=1#results
>
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
>
> If you reassign this bug to another package, please mark it as 'affects'-ing
> this package. See https://www.debian.org/Bugs/server-control#affects
>
> If you fail to reproduce this, please provide a build log and diff it with
> mine
> so that we can identify if something relevant changed in the meantime.
>
>
