Processed: Re: Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory
Processing commands for cont...@bugs.debian.org: > found 1069842 4.4.0-1 Bug #1069842 [r-base] rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory Marked as found in versions r-base/4.4.0-1. > affects 1069842 + src:rjava Bug #1069842 [r-base] rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory Added indication that 1069842 affects src:rjava > thanks Stopping processing here. Please contact me if you need assistance. -- 1069842: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1069842 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory
found 1069842 4.4.0-1 affects 1069842 + src:rjava thanks Thanks for the quick reply! [ I'm adding the affects so that the bug is shown on the web page for src:rjava. This helps to avoid duplicates, as there are more people reporting FTBFS bugs ] Thanks.
Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory
reassign 1069842 r-base thanks On 25 April 2024 at 18:27, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: Thanks for this. It is caused by the just released R 4.4.0 which now uses libdeflate, gets it somehow already via its Build-Depends but then does not implicitly pass it on via its virtual (child) package r-base-dev and its depends. (Both have a list of lib*-dev compression packages.) I will make a r-base 4.4.0-2 either today or tomorrow to correct this and have r-base-dev explicitly list libdeflate-dev. Dirk | | | [...] | debian/rules build | dh build --buildsystem R | dh_update_autotools_config -O--buildsystem=R | cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead | cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead | dh_autoreconf -O--buildsystem=R | dh_auto_configure -O--buildsystem=R | dh_auto_build -O--buildsystem=R | dh_auto_test -O--buildsystem=R | create-stamp debian/debhelper-build-stamp | fakeroot debian/rules binary | dh binary --buildsystem R | dh_testroot -O--buildsystem=R | dh_prep -O--buildsystem=R | dh_auto_install --destdir=debian/r-cran-rjava/ -O--buildsystem=R | I: R Package: rJava Version: 1.0-11 | I: Building using R version 4.4.0-1 | I: R API version: r-api-4.0 | I: Using built-time from d/changelog: Fri, 26 Jan 2024 11:10:09 -0600 | mkdir -p /<>/debian/r-cran-rjava/usr/lib/R/site-library | R CMD INSTALL -l /<>/debian/r-cran-rjava/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 26 Jan 2024 11:10:09 -0600'" | * installing *source* package ‘rJava’ ... | files ‘configure’, ‘jri/tools/config.guess’, ‘jri/tools/config.sub’, ‘src/config.h.in’ have the wrong MD5 checksums | ** using staged installation | checking for gcc... gcc | checking whether the C compiler works... yes | checking for C compiler default output file name... a.out | checking for suffix of executables... | checking whether we are cross compiling... no | checking for suffix of object files... o | checking whether the compiler supports GNU C... yes | checking whether gcc accepts -g... yes | checking for gcc option to enable C11 features... none needed | checking for sys/wait.h that is POSIX.1 compatible... yes | checking for stdio.h... yes | checking for stdlib.h... yes | checking for string.h... yes | checking for inttypes.h... yes | checking for stdint.h... yes | checking for strings.h... yes | checking for sys/stat.h... yes | checking for sys/types.h... yes | checking for unistd.h... yes | checking for string.h... (cached) yes | checking for sys/time.h... yes | checking for unistd.h... (cached) yes | checking for an ANSI C-conforming const... yes | configure: checking whether gcc supports static inline... | yes | checking whether setjmp.h is POSIX.1 compatible... yes | checking for gcc options needed to detect all undeclared functions... none needed | checking whether sigsetjmp is declared... yes | checking whether siglongjmp is declared... yes | checking Java support in R... present: | interpreter : '/usr/lib/jvm/default-java/bin/java' | archiver: '/usr/lib/jvm/default-java/bin/jar' | compiler: '/usr/lib/jvm/default-java/bin/javac' | header prep.: '' | cpp flags : '-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux' | java libs : '-L/usr/lib/jvm/default-java/lib/server -ljvm' | checking whether Java run-time works... yes | checking whether -Xrs is supported... yes | checking whether -Xrs will be used... yes | checking whether JVM will be loaded dynamically... no | checking whether JNI programs can be compiled... yes | checking whether JNI programs run... yes | checking JNI data types... ok | checking whether JRI should be compiled (autodetect)... yes | checking whether debugging output should be enabled... no | checking whether memory profiling is desired... no | checking whether threads support is requested... no | checking whether callbacks support is requested... no | checking whether JNI cache support is requested... no | checking whether headless init is enabled... no | checking whether JRI is requested... yes | configure: creating ./config.status | config.status: creating src/Makevars | config.status: creating R/zzz.R | config.status: creating src/config.h | === configuring in jri (/<>/jri) | configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local' 'CC=gcc' 'CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' 'LDFLAGS=-Wl,-z,relro' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' --cache-file=/dev/null --srcdir=. | checking
Processed: Re: Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory
Processing commands for cont...@bugs.debian.org: > reassign 1069842 r-base Bug #1069842 [src:rjava] rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory Bug reassigned from package 'src:rjava' to 'r-base'. No longer marked as found in versions rjava/1.0-11-1. Ignoring request to alter fixed versions of bug #1069842 to the same values previously set > thanks Stopping processing here. Please contact me if you need assistance. -- 1069842: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1069842 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory
Package: src:rjava Version: 1.0-11-1 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: [...] debian/rules build dh build --buildsystem R dh_update_autotools_config -O--buildsystem=R cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem R dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-rjava/ -O--buildsystem=R I: R Package: rJava Version: 1.0-11 I: Building using R version 4.4.0-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 26 Jan 2024 11:10:09 -0600 mkdir -p /<>/debian/r-cran-rjava/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-rjava/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 26 Jan 2024 11:10:09 -0600'" * installing *source* package ‘rJava’ ... files ‘configure’, ‘jri/tools/config.guess’, ‘jri/tools/config.sub’, ‘src/config.h.in’ have the wrong MD5 checksums ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes configure: checking whether gcc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking for gcc options needed to detect all undeclared functions... none needed checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/lib/jvm/default-java/bin/java' archiver: '/usr/lib/jvm/default-java/bin/jar' compiler: '/usr/lib/jvm/default-java/bin/javac' header prep.: '' cpp flags : '-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux' java libs : '-L/usr/lib/jvm/default-java/lib/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... yes checking whether JNI programs run... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/<>/jri) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local' 'CC=gcc' 'CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' 'LDFLAGS=-Wl,-z,relro' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for
