Your message dated Sat, 25 Feb 2017 00:19:09 +0000 with message-id <e1chq4r-00080z...@fasolo.debian.org> and subject line Bug#855130: fixed in med-fichier 3.0.6-11 has caused the Debian Bug report #855130, regarding med-fichier: MED library is not compatible with HDF5 1.10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 855130: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855130 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: med-fichier Version: 3.0.6-11 Severity: grave Justification: renders package unusable Hi, From the Salome Platform support forum [1]: > Problems with Salome and Code Saturne in Debian > Posted by Elektrix at January 03. 2017 > > Hello all, > > I'm trying to set up a CFD case with Salome, export the mesh in a MED file > and then process it with Code Saturne. CS doesn't read the MED file and gives > the error in the preprocessing stage: > > _MEDdatasetRd.c [139] : Erreur à la lecture du dataset > _MEDdatasetRd.c [139] : COO > HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: > #000: ../../../src/H5Dio.c line 170 in H5Dread(): can't read data > major: Dataset > minor: Read failed > #001: ../../../src/H5Dio.c line 418 in H5D__read(): unable to set up type > info > major: Dataset > minor: Unable to initialize object > #002: ../../../src/H5Dio.c line 953 in H5D__typeinfo_init(): not a datatype > major: Invalid arguments to routine > minor: Inappropriate type > _MEDdatasetRd.c [142] : _dataset = 2 > _MEDdatasetRd.c [143] : _i = 0 > _MEDdatasetRd.c [144] : (*filter).memspace[_i] = 2 > _MEDdatasetRd.c [145] : (*filter).diskspace[_i] = 3 > _MEDmeshAdvancedRd30.c [462] : Erreur à la lecture du dataset > _MEDmeshAdvancedRd30.c [462] : > _MEDmeshAdvancedRd30.c [463] : meshname = "Mesh_water" > _MEDmeshAdvancedRd30.c [463] : numit = -1 > _MEDmeshAdvancedRd30.c [463] : numdt = -1 > _MEDmeshAdvancedRd30.c [463] : _datagroupname2 = "NOE" > _MEDmeshAdvancedRd30.c [464] : _datagroupname3 = "" > _MEDmeshAdvancedRd30.c [464] : _profilename = "MED_NO_PROFILE_INTERNAL" > > The problem can be because I installed Salome from the SALOME-7.6.0-DB07.tgz > archive whilst Code Saturne is a Debian package and is installed via the > Debian package system which is much easier than installing the original > package. So the med and hdf5 libraries of CS come from the Debian > repositories. I can't use newer versions of Salome (7.7.1 or 7.8.0) as they > produce MED3.1 files but my CS reads only MED3.0 files. > > The details of my machine: > > Debian stretch (testing) on AMD64 > > Salome 7.6.0 from SALOME-7.6.0-DB07.tgz > > Code Saturne 4.3 Debian package > > libmed 3.0.6-10.1 Debian package > > hdf5 1.10.0 Debian package > > Not knowing if this problem comes from how I create the mesh I tried to run > one of the test cases from the Code Saturne tutorials but ran into other > problems. > > If you need any other information pleas let me know. Any hint on how to go > further is very welcome. > > Best regards > > Elektrix .... > Re: Problems with Salome and Code Saturne in Debian > Posted by Yvan Fournier at Monday 16:21 > > Hello, > > I was contacted by the Debian maintainer relative to this, so it seems the > bug was reported. > > The root problem is that the MED library is not compatible with HDF5 1.10 > yet. So reverting to HDF5 1.8 as indicated is the solution for now, but the > better solution would be for MED to handle compatibility with both HDF5 1.8 > and HDF5 1.10 (or at least 1.10 for future versions). > > Best regards, > > Yvan [1] http://www.salome-platform.org/forum/forum_9/122041955 Thanks, _g.
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--- Begin Message ---Source: med-fichier Source-Version: 3.0.6-11 We believe that the bug you reported is fixed in the latest version of med-fichier, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 855...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Anton Gladky <gl...@debian.org> (supplier of updated med-fichier package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 20 Feb 2017 16:37:45 +0100 Source: med-fichier Binary: libmed-dev libmed-doc libmed-tools libmed1v5 libmedc-dev libmedc1v5 libmedimport-dev libmedimport0v5 Architecture: source Version: 3.0.6-11 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Anton Gladky <gl...@debian.org> Description: libmed-dev - Development files for libmed libmed-doc - Documentation for the MED-fichier library libmed-tools - Runtime tools to handle MED files libmed1v5 - Library to exchange meshed data (Fortran version) libmedc-dev - Development files for libmedc libmedc1v5 - Library to exchange meshed data (C version) libmedimport-dev - Development files for libmedimport0 libmedimport0v5 - Library to import old version files Closes: 855130 Changes: med-fichier (3.0.6-11) unstable; urgency=medium . * Team upload. . [ Gilles Filippini ] * Do not ignore testcase failures * Temporarily disabling MPI support for arm64 (not functionnal currently) * New patches: - hdf5-1.10-support.patch: fix HDF5 1.10 support (closes: #855130) - parallel-test-seed.patch: use the same random() seed for each MPI process - tests-ignore-native-char-impl.patch: patch some testcase scripts to ignore differences from arch specific native char types * Drop patch fix-fid-type-in-medequivinfo.patch now included into hdf5-1.10-support.patch . [ Anton Gladky ] * Add --oversubscribe option to mpi to escape fails if slots are not available Checksums-Sha1: 2a3ae16695b13de34c2a001773229c5370ea800e 2766 med-fichier_3.0.6-11.dsc 0233d6ebbc1772eca1dd6e37fae0bcc6eb9d834c 49208 med-fichier_3.0.6-11.debian.tar.xz 586e23b1eaf687f96e2e3523b4e171bcc311e8de 6790 med-fichier_3.0.6-11_source.buildinfo Checksums-Sha256: 41f39d4d59f2163e2ee23ac51fc7daeb21359dfcfce29b6a87881ecca25ba71a 2766 med-fichier_3.0.6-11.dsc 4816b454394783e6558f48c23b8054eb96fbb6f95e8e22c30241edd447e2ae66 49208 med-fichier_3.0.6-11.debian.tar.xz db621dde8dc5d18672b2b8ac12aae92b9d6e2d9ca2de0214bea252a97b43d0ed 6790 med-fichier_3.0.6-11_source.buildinfo Files: cafa2b685a969aa2917184cb341d7f88 2766 libs optional med-fichier_3.0.6-11.dsc b3207a5fba9aba6feb66ebe5bc0493d5 49208 libs optional med-fichier_3.0.6-11.debian.tar.xz c2bdcd63085d2b98b94e1ff9669c3799 6790 libs optional med-fichier_3.0.6-11_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEu71F6oGKuG/2fnKF0+Fzg8+n/wYFAlisZ3gACgkQ0+Fzg8+n /wbGAw//W7GZ9Bmzm5QC6jRj35S358aSbKbCu8MAfZ7P3U7E0m6llKy0Dc44isrg 5yosyDWdty9LlX/1zjNHq2Gcpc11VIeQ743i/kNbZCTLjlRxTYULwYgZQaWGEQej MCUsdenECRqgj5eYyhayO1NFZYpAVlkKLM+B/Hu/sUx5StEy2CfC6xi1ac37atGU at9XmFMWVo2rbzI2pemt9UcI/2LLVhsbtIxOntbN6GFhEY3zSqEsvpt8/I1AbHZi GKo0uOj02D/wFWCrb/gd5Vc2B/0Q9ND3mh4VDq0WpMHPx9p9YHxfG716AGFNXY7J vPdsYhu970uU9E+wVJfy5fapK13R63xnWNWaw4nf/H0E1bNSnjGcKBEtdQC4tn7B Ahzpn5I4PB5ZQ5wuQWRzDIvODJG9AKtI1AaM5OgmAge6ENjAzJl9SfSUmszlIEhC GwuSWmzWJYa0S3NkByafUa87F+r5NP7Spy8sNnWVUVnAgvLU2lDtdjK1f5fZiope wwISm0RjxSsXfwDzmv7uvZkJkjLNtz1UK0TGIElXgB6QCaG/IhTmIlUnhH8LBNp6 GAgGPnRvtNVPSv7iGHNN9wJgJHuynRs5uKBfDP4+0QfSqY636DY7RvNIIf9rf5Oa E4hpQ7UByhaJZFT/WSsE5iNqBDOp4LA31rwloOg/m6MYMgjty0o= =w6xD -----END PGP SIGNATURE-----
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