Bug#871083: Bug#871083: python-pysam: FTBFS: Test failures
On Sun, Oct 01, 2017 at 12:38:33PM -0400, Afif Elghraoui wrote: > > Okay, I've just skipped that one failing test and uploaded the new > version in order to move things along. Thanks a lot, Andreas. -- http://fam-tille.de
Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures
على السبت 30 أيلول 2017 21:52، كتب peter green: > My understanding is that the new version of python 2.7 removed a module > called "_PyFPE" and that C extensions referencing symbols from this module > need to be rebuilt. This has been enforced by breaks in the python2.7 > package. Your package is on said list. > > So for the new python2.7 to migrate to testing the FTBFS in python-pysam > needs to be fixed. Okay, I've just skipped that one failing test and uploaded the new version in order to move things along. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures
On 30/09/17 21:43, Afif Elghraoui wrote: The new upstream version is the solution to this problem, but we've been going back and forth over issues (fixing one, revealing another) in updating the package. I'll see if I can do it today, but I don't understand why this should be blocking python itself. It's not python that broke this package-- it was updating some of its other dependencies (htslib/samtools). My understanding is that the new version of python 2.7 removed a module called "_PyFPE" and that C extensions referencing symbols from this module need to be rebuilt. This has been enforced by breaks in the python2.7 package. Your package is on said list. So for the new python2.7 to migrate to testing the FTBFS in python-pysam needs to be fixed.
Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures
على السبت 30 أيلول 2017 16:43، كتب Afif Elghraoui: > I'll see if I can do it today, I see Andreas Tille is on top of this. The current issue right now is this upstream bug we encounter when trying to build the latest upstream version: https://github.com/pysam-developers/pysam/issues/542 regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures
Hi, Peter, على السبت 30 أيلول 2017 09:18، كتب peter green: > Any ETA on fixing this? it is blocking the migration of python2.7 to testing. > > I notice that the package tracker claims that there is a new upstream version > available. > The new upstream version is the solution to this problem, but we've been going back and forth over issues (fixing one, revealing another) in updating the package. I'll see if I can do it today, but I don't understand why this should be blocking python itself. It's not python that broke this package-- it was updating some of its other dependencies (htslib/samtools). regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
Bug#871083: python-pysam: FTBFS: Test failures
Any ETA on fixing this? it is blocking the migration of python2.7 to testing. I notice that the package tracker claims that there is a new upstream version available.
Bug#871083: python-pysam: FTBFS: Test failures
Source: python-pysam
Version: 0.11.2.2+ds-3
Severity: serious
Tags: buster sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20170805 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> --
> Traceback (most recent call last):
> File "/<>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line
> 149, in setUp
> self.check_version()
> File "/<>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line
> 139, in check_version
> samtools_version))
> ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5
>
> --
> Ran 760 tests in 56.829s
>
> FAILED (SKIP=5, errors=2)
> (0, 0)
> E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd
> /<>/python-pysam-0.11.2.2+ds/.pybuild/pythonX.Y_2.7/build;
> python2.7 -m nose
> dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13
> debian/rules:39: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/2017/08/05/python-pysam_0.11.2.2+ds-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
