Bug#882169: marked as done (seqan2: FTBFS on indep-only build)

2017-12-06 Thread Debian Bug Tracking System 
Your message dated Wed, 06 Dec 2017 17:07:09 +
with message-id 
and subject line Bug#882169: fixed in seqan2 
2.3.2.000platform-issues7-41f58c3+dfsg-2
has caused the Debian Bug report #882169,
regarding seqan2: FTBFS on indep-only build
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
882169: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=882169
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqan2
Version: 2.3.2.000platform-issues6-9cf5a69+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

seqan2 FTBFS during the indep-only build of the arch:all packages:

https://buildd.debian.org/status/fetch.php?pkg=seqan2=all=2.3.2.000platform-issues6-9cf5a69%2Bdfsg-3=1511019385=0

   debian/rules override_dh_installman
make[1]: Entering directory 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg'
$DEB_BUILD_OPTIONS is [parallel=4]
dh_link
find -L 
/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin
 -name . -o -type d -prune -o -type l -exec rm {} +
find: 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin':
 No such file or directory
debian/rules:107: recipe for target 'override_dh_installman' failed
make[1]: *** [override_dh_installman] Error 1


You probably want a override_dh_xxx-arch target there, but looking at the
rules file I don't get what you are doing there. Why is dh_link called
in override_dh_installman? And are the two find calls in in
override_dh_link-arch and override_dh_installman not doing the same?
And could be simplified to 

# delete broken symlinks - some apps are not built on all architectures
find -L $(CURDIR)/debian/$(pkgapps)/usr/bin -type l -delete

Then there is this comment:
# we generate only those manpages where binaries are linked to /usr/bin
Which somehow implies: the list of manpages included some arch:all doc
package depends on the architecture where the package was built ???
Shouldn't that rather be a superset?


Andreas

PS: using the full hash would only marginally increase the length of the 
version number ;-)
--- End Message ---
--- Begin Message ---
Source: seqan2
Source-Version: 2.3.2.000platform-issues7-41f58c3+dfsg-2

We believe that the bug you reported is fixed in the latest version of
seqan2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 882...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe  (supplier of updated seqan2 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Wed, 06 Dec 2017 05:28:59 -0800
Source: seqan2
Binary: seqan-apps libseqan2-dev
Architecture: source
Version: 2.3.2.000platform-issues7-41f58c3+dfsg-2
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Michael R. Crusoe 
Description:
 libseqan2-dev - C++ library for the analysis of biological sequences 
(development
 seqan-apps - C++ library for the analysis of biological sequences
Closes: 882169
Changes:
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-2) experimental; urgency=medium
 .
   [ Andreas Tille ]
   * Work around missing dir in indep-only builds
 Closes: #882169
 .
   [ Michael R. Crusoe ]
   * Cleanup from not pushing my changes
Checksums-Sha1:
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 dc96653dec2f2534040549e0914a1d4fe2c740e4a42dcb79226551374a315895 6439

Bug#882169: marked as done (seqan2: FTBFS on indep-only build)

2017-12-06 Thread Debian Bug Tracking System 
Your message dated Wed, 06 Dec 2017 10:35:07 +
with message-id 
and subject line Bug#882169: fixed in seqan2 2.3.2+dfsg2-4
has caused the Debian Bug report #882169,
regarding seqan2: FTBFS on indep-only build
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
882169: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=882169
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqan2
Version: 2.3.2.000platform-issues6-9cf5a69+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

seqan2 FTBFS during the indep-only build of the arch:all packages:

https://buildd.debian.org/status/fetch.php?pkg=seqan2=all=2.3.2.000platform-issues6-9cf5a69%2Bdfsg-3=1511019385=0

   debian/rules override_dh_installman
make[1]: Entering directory 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg'
$DEB_BUILD_OPTIONS is [parallel=4]
dh_link
find -L 
/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin
 -name . -o -type d -prune -o -type l -exec rm {} +
find: 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin':
 No such file or directory
debian/rules:107: recipe for target 'override_dh_installman' failed
make[1]: *** [override_dh_installman] Error 1


You probably want a override_dh_xxx-arch target there, but looking at the
rules file I don't get what you are doing there. Why is dh_link called
in override_dh_installman? And are the two find calls in in
override_dh_link-arch and override_dh_installman not doing the same?
And could be simplified to 

# delete broken symlinks - some apps are not built on all architectures
find -L $(CURDIR)/debian/$(pkgapps)/usr/bin -type l -delete

Then there is this comment:
# we generate only those manpages where binaries are linked to /usr/bin
Which somehow implies: the list of manpages included some arch:all doc
package depends on the architecture where the package was built ???
Shouldn't that rather be a superset?


Andreas

PS: using the full hash would only marginally increase the length of the 
version number ;-)
--- End Message ---
--- Begin Message ---
Source: seqan2
Source-Version: 2.3.2+dfsg2-4

We believe that the bug you reported is fixed in the latest version of
seqan2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 882...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated seqan2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 06 Dec 2017 11:11:59 +0100
Source: seqan2
Binary: seqan-apps libseqan2-dev
Architecture: source
Version: 2.3.2+dfsg2-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 libseqan2-dev - C++ library for the analysis of biological sequences 
(development
 seqan-apps - C++ library for the analysis of biological sequences
Closes: 882169
Changes:
 seqan2 (2.3.2+dfsg2-4) unstable; urgency=medium
 .
   * Work around missing dir in indep-only builds
 Closes: #882169
   * d/rules: drop --parallel which is redundant for debhelper 10
   * Do not generate manpages in arch indep builds (as done in
 experimental branch)
Checksums-Sha1:
 6770cb592934672a97b4a316a6250fa4276ca637 2409 seqan2_2.3.2+dfsg2-4.dsc
 79ae34d1c38a62e4010bcbc9b8900a8949fe8163 12164 
seqan2_2.3.2+dfsg2-4.debian.tar.xz
 722d178911b3f10ffb40d9a82f4a62053c3ec7c6 12258 
seqan2_2.3.2+dfsg2-4_source.buildinfo
Checksums-Sha256:
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seqan2_2.3.2+dfsg2-4.dsc
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seqan2_2.3.2+dfsg2-4.debian.tar.xz
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seqan2_2.3.2+dfsg2-4_source.buildinfo
Files:
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 771d8295879028e6f557d8bbbd39d607 12164 science optional 
seqan2_2.3.2+dfsg2-4.debian.tar.xz

Bug#882169: marked as done (seqan2: FTBFS on indep-only build)

2017-11-22 Thread Debian Bug Tracking System 
Your message dated Wed, 22 Nov 2017 06:55:24 +
with message-id 
and subject line Bug#882169: fixed in seqan2 
2.3.2.000platform-issues7-41f58c3+dfsg-1
has caused the Debian Bug report #882169,
regarding seqan2: FTBFS on indep-only build
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
882169: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=882169
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqan2
Version: 2.3.2.000platform-issues6-9cf5a69+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

seqan2 FTBFS during the indep-only build of the arch:all packages:

https://buildd.debian.org/status/fetch.php?pkg=seqan2=all=2.3.2.000platform-issues6-9cf5a69%2Bdfsg-3=1511019385=0

   debian/rules override_dh_installman
make[1]: Entering directory 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg'
$DEB_BUILD_OPTIONS is [parallel=4]
dh_link
find -L 
/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin
 -name . -o -type d -prune -o -type l -exec rm {} +
find: 
'/<>/seqan2-2.3.2.000platform-issues6-9cf5a69+dfsg/debian/seqan-apps/usr/bin':
 No such file or directory
debian/rules:107: recipe for target 'override_dh_installman' failed
make[1]: *** [override_dh_installman] Error 1


You probably want a override_dh_xxx-arch target there, but looking at the
rules file I don't get what you are doing there. Why is dh_link called
in override_dh_installman? And are the two find calls in in
override_dh_link-arch and override_dh_installman not doing the same?
And could be simplified to 

# delete broken symlinks - some apps are not built on all architectures
find -L $(CURDIR)/debian/$(pkgapps)/usr/bin -type l -delete

Then there is this comment:
# we generate only those manpages where binaries are linked to /usr/bin
Which somehow implies: the list of manpages included some arch:all doc
package depends on the architecture where the package was built ???
Shouldn't that rather be a superset?


Andreas

PS: using the full hash would only marginally increase the length of the 
version number ;-)
--- End Message ---
--- Begin Message ---
Source: seqan2
Source-Version: 2.3.2.000platform-issues7-41f58c3+dfsg-1

We believe that the bug you reported is fixed in the latest version of
seqan2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 882...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe  (supplier of updated seqan2 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 21 Nov 2017 22:19:27 -0800
Source: seqan2
Binary: seqan-apps libseqan2-dev
Architecture: source
Version: 2.3.2.000platform-issues7-41f58c3+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Michael R. Crusoe 
Description:
 libseqan2-dev - C++ library for the analysis of biological sequences 
(development
 seqan-apps - C++ library for the analysis of biological sequences
Closes: 882169
Changes:
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-1) experimental; urgency=medium
 .
   [ Andreas Tille ]
   * Work around missing dir in indep-only builds
 Closes: #882169
 .
   [ Michael R. Crusoe ]
   * Another update from upstream
Checksums-Sha1:
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