Your message dated Fri, 10 Aug 2018 11:23:00 +0300 with message-id <20180810082300.GA30561@localhost> and subject line Re: Bug#897727: cp2k: ftbfs with GCC-8 has caused the Debian Bug report #897727, regarding cp2k: ftbfs with GCC-8 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 897727: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897727 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:cp2k Version: 5.1-4 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-8 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The severity of this report will be raised before the buster release. The full build log can be found at: http://aws-logs.debian.net/2018/05/01/gcc8/cp2k_5.1-4_unstable_gcc8.log.gz The last lines of the build log are at the end of this report. To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-8/porting_to.html [...] /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/base/base_hooks.F base_hooks.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"base/base_hooks.F\"" -I'/<<PKGBUILDDIR>>/src/base/' base_hooks.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_stream.F acc_stream.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_stream.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_stream.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_event.F acc_event.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_event.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_event.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_devmem.F acc_devmem.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_devmem.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_devmem.F90 /<<PKGBUILDDIR>>/src/acc/acc_devmem.F:353:0: SUBROUTINE acc_devmem_info(free, avail) Warning: 'acc_devmem_info' defined but not used [-Wunused-function] /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F dbcsr_data_types.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/data/dbcsr_data_types.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/data/' dbcsr_data_types.F90 /<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F:173:0: END FUNCTION dbcsr_datatype_sizeof Warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized] /<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F:150:0: FUNCTION dbcsr_datatype_sizeof(datatype) RESULT(size) note: 'size' was declared here /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/btree.F btree.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/btree.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' btree.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_types.F dbcsr_types.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_types.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_types.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_array_sort.F dbcsr_array_sort.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_array_sort.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_array_sort.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_toollib.F dbcsr_toollib.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_toollib.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_toollib.F90 /<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/mpiwrap/message_passing.F message_passing.F90 mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May 2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"mpiwrap/message_passing.F\"" -I'/<<PKGBUILDDIR>>/src/mpiwrap/' message_passing.F90 /<<PKGBUILDDIR>>/src/mpiwrap/message_passing.F:36:6: USE mpi ! compiler *errors* mean mpi installation and fortran compiler mismatch: see INSTALL (-D__HAS_NO_MPI_MOD) 1 Fatal Error: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran compilation terminated. make[5]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:428: message_passing.o] Error 1 make[4]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:124: all] Error 2 make[3]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:113: popt] Error 2 make[2]: *** [Makefile:108: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/makefiles' make[1]: *** [debian/rules:39: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:25: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
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--- Begin Message ---On Fri, May 04, 2018 at 12:21:11PM +0000, Matthias Klose wrote: >... > USE mpi ! compiler *errors* mean mpi installation and fortran compiler > mismatch: see INSTALL (-D__HAS_NO_MPI_MOD) > 1 > Fatal Error: Cannot read module file 'mpi.mod' opened at (1), because it was > created by a different version of GNU Fortran > compilation terminated. > make[5]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:428: message_passing.o] > Error 1 >... This was a problem with the way the rebuild was done. There was also a build hang later, this was #904825 and is fixed now. cu Adrian -- "Is there not promise of rain?" Ling Tan asked suddenly out of the darkness. There had been need of rain for many days. "Only a promise," Lao Er said. Pearl S. Buck - Dragon Seed
--- End Message ---
