-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Wed, 15 May 2019 02:04:21 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 3.1.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
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Hash: SHA256
Format: 1.8
Date: Sun, 31 Mar 2019 01:59:48 -0400
Source: nvchecker
Binary: nvchecker
Architecture: source
Version: 1.4.3-1
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui
Changed-By: Afif Elghraoui
Description:
nvchecker - new
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Fri, 08 Feb 2019 21:45:38 -0500
Source: nvchecker
Binary: nvchecker
Architecture: source
Version: 1.3-2
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui
Changed-By: Afif Elghraoui
Description:
nvchecker - new
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-9
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
Description:
gridengine-client - Utilities for Grid Engine queue management
gridengine-common - Distributed resource management
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Hash: SHA256
Format: 1.8
Date: Wed, 30 Jan 2019 22:14:04 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 3.0.3+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sun, 27 Jan 2019 18:17:05 -0500
Source: qperf
Binary: qperf
Architecture: source
Version: 0.4.11-2
Distribution: unstable
Urgency: low
Maintainer: Debian HPC team
Changed-By: Afif Elghraoui
Description:
qperf - Measure
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Hash: SHA256
Format: 1.8
Date: Sat, 26 Jan 2019 21:15:14 -0500
Source: swiglpk
Binary: python-swiglpk python3-swiglpk
Architecture: source
Version: 4.65.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
Changed-By: Afif
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sat, 26 Jan 2019 21:19:47 -0500
Source: optlang
Binary: python-optlang python3-optlang
Architecture: source
Version: 1.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
Changed-By: Afif Elghraoui
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sat, 19 Jan 2019 01:37:25 -0500
Source: nvchecker
Binary: nvchecker
Architecture: source all
Version: 1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui
Changed-By: Afif Elghraoui
Description:
nvchecker
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Mon, 14 Jan 2019 21:23:04 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.6.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Thu, 13 Dec 2018 01:47:28 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.6.1-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sat, 15 Sep 2018 16:27:14 -0400
Source: pyconfigure
Binary: pyconfigure
Architecture: source
Version: 0.2.3-2
Distribution: unstable
Urgency: low
Maintainer: Afif Elghraoui
Changed-By: Afif Elghraoui
Description:
pyconfigure
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sat, 15 Sep 2018 15:12:39 -0400
Source: adduser
Binary: adduser
Architecture: source
Version: 3.118
Distribution: unstable
Urgency: low
Maintainer: Debian Adduser Developers
Changed-By: Afif Elghraoui
Description:
adduser
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-4+deb9u2
Distribution: stretch
Urgency: low
Maintainer: Debian Grid Engine Maintainers
Changed-By: Afif Elghraoui
Description:
gridengine-client - Utilities for Grid Engine queue management
gridengine-common - Distributed
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-4+deb9u1
Distribution: stretch
Urgency: medium
Maintainer: Debian Grid Engine Maintainers
Changed-By: Afif Elghraoui
Description:
gridengine-client - Utilities for Grid Engine queue management
gridengine-common - Distributed
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Hash: SHA256
Format: 1.8
Date: Sun, 08 Jul 2018 00:49:22 -0400
Source: sniffles
Binary: sniffles
Architecture: source
Version: 1.0.8+ds-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
Changed-By: Afif Elghraoui
Description
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Wed, 04 Jul 2018 15:06:29 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.5.2-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team
Changed-By: Afif Elghraoui
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Changes:
singularity-container (2.5.1-1) unstable; urgency=high
.
[ Yaroslav Halchenko ]
* debian/control
- Homepage
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Changes:
singularity-container (2.5.0-1) unstable; urgency=high
.
* New upstream version, including security updates
ain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-optlang - sympy based mathematical programming language (Python 2)
python3-optlang - sympy based mathematical programming language (Python 3)
Changes:
optlang (1.4.1-1) unstable; urgency=medium
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-easydev - common utilities to ease the development of Python packages
(Pyth
python3-easydev - common utilities to ease the development of Python packages
(Pyth
Closes: 896292 896402
Chan
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Closes: 893133
Changes:
singularity-container (2.4.5-1) unstable; urgency=medium
.
[ Yaroslav H
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
sniffles - structural variation caller using third-generation sequencing
Changes:
sniffles (1.0.8+ds-1) unstable; urgency=medium
.
* New upstream version
* Run tests
* Refresh patches
Ch
ain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-optlang - sympy based mathematical programming language (Python 2)
python3-optlang - sympy based mathematical programming language (Python 3)
Changes:
optlang (1.4.0-1) unstable; urgency=medium
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
canu - single molecule sequence assembler for genomes
Changes:
canu (1.7+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Update handling of mhap bundled copy
* Refresh patches
* Use a wrapper script for
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
mhap - locality-sensitive hashing to detect long-read overlaps
Changes:
mhap (2.1.3+dfsg-1) unstable; urgency=medium
.
[ Afif Elghraoui ]
* Bump minimum required libguava-java version
* New upstream versio
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
gridengine-client - Utilities for Grid Engine queue management
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
smalr - interrogation of the methylation status of nucleotide sequencing
Changes:
smalr (1.1+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Adjust packaging for changes in source organization
Ch
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Changes:
singularity-container (2.4.4-1) unstable; urgency=medium
.
* New upstream version
* Refresh
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
smalr - interrogation of the methylation status of nucleotide sequencing
Closes: 891485
Changes:
smalr (1.0.1-1) unstable; urgency=medium
.
* Initial release (Closes: #891485)
Checksums-Sha1:
5dda35b0e4793a7e9ac5ba5b8c25
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
trnascan-se - detection of transfer RNA genes in genomic sequence
trnascan-se-common - detection of transfer RNA genes in genomic sequence
(common files
Changes:
trnascan-se (2.0.0-1) unsta
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.9.0-1) unstable; urgency=medium
.
* New upstream version
* Refresh patches
* Bump upstream copyright year
* Bump minimum required f
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
assemblytics - detect and analyze structural variants from a genome assembly
Changes:
assemblytics (0~20170131+ds-2) unstable; urgency=low
.
* Add d/upstream/metadata
Checksums-Sha1:
6d7c82e0b1b57dbf5d878bca441e
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Closes: 887192
Changes:
singularity-container (2.4.2-4) unstable; urgency=low
.
* Standards-Version 4.1.3
* debhelper compat 1
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
assemblytics - detect and analyze structural variants from a genome assembly
Closes: 890220
Changes:
assemblytics (0~20170131+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #890220)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
mummer - Efficient sequence alignment of full genomes
mummer-doc - Documentation for MUMmer
Changes:
mummer (3.23+dfsg-3) unstable; urgency=low
.
* Team upload
.
[ Fabian Klötzl ]
* improve performance
ain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-swiglpk - Plain Python bindings for the GNU Linear Programming Kit
(Python
python3-swiglpk - Plain Python bindings for the GNU Linear Programming Kit
(Python
Changes:
swiglpk (1.4.4-2) unstable;
nce-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-optlang - sympy based mathematical programming language (Python 2)
python3-optlang - sympy based mathematical programming language (Python 3)
Closes: 889611
Changes:
optlang (1.3.0-1) unsta
nce-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-swiglpk - Plain Python bindings for the GNU Linear Programming Kit
(Python
python3-swiglpk - Plain Python bindings for the GNU Linear Programming Kit
(Python
Closes: 889613
Changes:
swig
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
singularity-container - container platform focused on supporting "Mobility of
Compute"
Changes:
singularity-container (2.4.2-3) unstable; urgency=low
.
* Add Recommends: squashfs-tools
* lintian overrides: update
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.8.5-2) unstable; urgency=low
.
* Remove dependency on nonexistent package sse-support [i386]
Checksums-Sha1:
50cc26b46b17040a66fff8c9cf094d541
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.8.5-1) unstable; urgency=medium
.
* New upstream version
* d/control:
+ Add sse-support to Build-Depends for i386
+ Rem
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
hinge - long read genome assembler based on hinging
Changes:
hinge (0.5.0-3) unstable; urgency=low
.
* Mark spdlog patch as forwarded upstream
* d/control: copy Depends into Build-Depends
to allow migration to Testi
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Changes:
dascrubber (0~20180108-1) unstable; urgency=medium
.
* New upstream snapshot (git 3491b14)
* Bump copyright years
* Bump Stand
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dazzdb - manage nucleotide sequencing read data
Changes:
dazzdb (1.0+20180115-1) unstable; urgency=medium
.
* New upstream snapshot (git 7104852)
* Bump copyright years
* Bump Standards-Version to 4.1.3
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
daligner - local alignment discovery between long nucleotide sequencing read
Changes:
daligner (1.0+20180108-1) unstable; urgency=medium
.
* New upstream snapshot (git 233274a)
* Bump Standards-Version to 4.1
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
sprai - single-pass sequencing read accuracy improver
Changes:
sprai (0.9.9.23+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Bump Standards-Version to 4.1.3
Checksums-Sha1:
9eb53ec1d8e67116c7b6c15e887c
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-7
Distribution: unstable
Urgency: low
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
gridengine-client - Utilities for Grid Engine queue management
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
falcon - diploid-aware genome assembly of single-molecule sequencing reads
Closes: 864376 864378
Changes:
falcon (1.8.8-1) unstable; urgency=medium
.
[ Afif Elghraoui ]
* New upstream version
* Update and refresh patches
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
hinge - long read genome assembler based on hinging
Closes: 878962
Changes:
hinge (0.5.0-1) unstable; urgency=medium
.
* Initial release (Closes: #878962)
Checksums-Sha1:
bb9729965847976dc86a3ba112a1a085d2ed36c1 2011 h
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
sniffles - structural variation caller using third-generation sequencing
Changes:
sniffles (1.0.7+ds-1) unstable; urgency=medium
.
* New upstream version
* Update/refresh patches
Ch
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Grid Engine Maintainers
<pkg-gridengine-de...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
gridengine-client - Utilit
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.8.4-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* upstream/metadata RRID->SciCrunch
.
[ Afif Elghraoui ]
* New u
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
sniffles - structural variation caller using third-generation sequencing
Changes:
sniffles (1.0.6+ds-1) unstable; urgency=medium
.
* New upstream version
* Install upstream README
* d/watch: remove unnece
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
libblasr - tools for aligning PacBio reads to target sequences
libblasr-dev - tools for aligning PacBio reads to target sequences
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-colormap - ease manipulation of matplotlib colormaps and color codecs
(Pytho
python3-colormap - ease manipulation of matplotlib colormaps and color codecs
(Pytho
Closes: 878963
Chan
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dazzdb - manage nucleotide sequencing read data
Changes:
dazzdb (1.0+20171014-1) unstable; urgency=medium
.
* New upstream snapshot (git 8ab7daf)
* Update and refresh patches
* Bump Standards-Version to 4.1
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Changes:
dascrubber (0~20171015-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* Created debian/upstream/metadata with refs to
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
daligner - local alignment discovery between long nucleotide sequencing read
Changes:
daligner (1.0+20171010-2) unstable; urgency=low
.
[ Steffen Moeller ]
* [debian/upstream/metadata] Reference to OMICtools added.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
daligner - local alignment discovery between long nucleotide sequencing read
Changes:
daligner (1.0+20171010-1) unstable; urgency=medium
.
* New upstream snapshot (git b966696)
* Bump Standards Version to 4.1
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-easydev - common utilities to ease the development of Python packages
(Pyth
python3-easydev - common utilities to ease the development of Python packages
(Pyth
Closes: 878963
Chan
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxf
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Closes: 868958
Changes:
bcftools (1.5-2) unstable; urgency=low
.
* Incorporate lost changes from 1.4.1-3 (Closes: #868958)
* Update Standards-Version to
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
(
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
python3-pysam
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Changes:
bcftools (1.5-1) unstable; urgency=medium
.
* migrate to Unstable
.
bcftools (1.5-1~exp1) experimental; urgency=medium
.
[ Afif Elghraoui ]
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
(
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
p
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
adduser- add and remove users and groups
Closes: 708073 759740 763055 840982 845791
Changes:
adduser (3.116) unstable; urgency=medium
.
* Advise installation of 'perl' rather than 'perl-modules'
(Closes: #840982)
* Improve
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-avro - Apache Avro serialization system — Python 2 library
python3-avro - Apache Avro serialization system — Python 3 library
Changes:
python-avro (1.8.2+dfsg-1) unstable; urgency=medium
.
*
-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Grid Engine Maintainers
<pkg-gridengine-de...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
gridengine-client - Utilit
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Changes:
bcftools (1.5-1~exp1) experimental; urgency=medium
.
[ Afif Elghraoui ]
* Update packaging for new build system
.
[ Andreas Till
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Changes:
bcftools (1.5-1~exp1) experimental; urgency=medium
.
[ Afif Elghraoui ]
* Update packaging for new build system
.
[ Andreas Till
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
canu - single molecule sequence assembler for genomes
Changes:
canu (1.5+dfsg-1) unstable; urgency=medium
.
* New upstream release
* d/copyright: Drop Files-Excluded entries for files removed upstream
* Refresh and up
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
trnascan-se - detection of transfer RNA genes in genomic sequence
trnascan-se-common - detection of transfer RNA genes in genomic sequence
(common files
Closes: 803542
Changes:
trnascan
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
canu - single molecule sequence assembler for genomes
Closes: 395843
Changes:
canu (1.3+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: #395843)
Checksums-Sha1:
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<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
(
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
python3-pysam
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-pbcore - Python library for processing PacBio data files
python-pbcore-doc - Python library for processing PacBio data files
(documentation)
Changes:
python-pbcore (1.2.11+dfsg-1) unsta
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-cobra - constraint-based modeling of biological networks (Python 2)
python-cobra-data - constraint-based modeling of biological networks (data)
python3-cobra - constraint-ba
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
falcon - diploid-aware genome assembly of single-molecule sequencing reads
Changes:
falcon (1.8.6-1) unstable; urgency=medium
.
* New upstream release
* Remove Files-Excluded line
* New dependencies: rsync, time
* Up
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-avro - Apache Avro serialization system — Python 2 library
python3-avro - Apache Avro serialization system — Python 3 library
Changes:
python-avro (1.8.2~rc1+dfsg-1) experimental; ur
med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
python-avro - Apache Avro serialization system — Python 2 library
python3-avro - Apache Avro serialization system — Python 3 library
Changes:
python-avro (1.8.2~rc1+dfsg-1) experimental; ur
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
libpbbam - Pacific Biosciences binary alignment/map (BAM) library
libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers)
pbbamtools - processing Pacific Biosciences binary a
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
pbgenomicconsensus - Pacific Biosciences variant and consensus caller
python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller
(Python 2)
Changes:
pbgenomicconsen
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
sprai - single-pass sequencing read accuracy improver
Changes:
sprai (0.9.9.22+dfsg-1) unstable; urgency=low
.
* Add example data
* Bump copyright year
* New upstream release
* Update upstream contact email addre
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Thu, 19 Jan 2017 03:19:48 -0800
Source: ori
Binary: ori
Architecture: source
Version: 0.8.1+ds1-3
Distribution: unstable
Urgency: low
Maintainer: Afif Elghraoui <a...@debian.org>
Changed-By: Afif Elghraoui <a...@d
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dazzdb - manage nucleotide sequencing read data
Changes:
dazzdb (1.0+20161112-2) unstable; urgency=medium
.
* compiler-flags.patch: slight corrections for DBwipe
Checksums-Sha1:
e02b8d43f45fa00cf2c56450ad24aabae
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dazzdb - manage nucleotide sequencing read data
Changes:
dazzdb (1.0+20161112-1) unstable; urgency=medium
.
* New upstream snapshot (git e31d451)
* Refresh and update patches
* New build-dependency: zlib
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
daligner - local alignment discovery between long nucleotide sequencing read
Changes:
daligner (1.0+20161119-1) unstable; urgency=medium
.
* New upstream snapshot (git a9458dc)
Ch
Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
kineticstools - detection of DNA modifications
kineticstools-data - detection of DNA modifications -- data files
python-kineticstools - detection of DNA modificatio
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
pbalign- map Pacific Biosciences reads to reference DNA sequences
pbalign-doc - documentation for pbalign
python-pbalign - map Pacific Biosciences reads to reference DNA sequences
(Python2
Chang
Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
pbhoney- genomic structural variation discovery
pbjelly- genome assembly upgrading tool
pbsuite- software for Pacific Biosciences sequencing data
pyt
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
dazzdb - manage nucleotide sequencing read data
Closes: 849433
Changes:
dazzdb (1.0+20160930-2) unstable; urgency=low
.
* Drop rename-simulator.patch in favor of a line in d/rules
* Use LDLIBS rather than LDFLAGS
org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
daligner - local alignment discovery between long nucleotide sequencing read
Closes: 849431
Changes:
daligner (1.0+20160927-2) unstable; urgency=low
.
* Use LDLIBS rather than LDFLAGS.
Thanks to Logan Rosen (Clo
hanged-By: Afif Elghraoui <a...@debian.org>
Description:
blasr - mapping single-molecule sequencing reads
Changes:
blasr (5.3+0-1) unstable; urgency=medium
.
* Imported Upstream version 5.3+0 (corresponds to smrtanalysis-4.0.0 tag)
* Refresh patches
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
libpbcopper-dev - data structures, algorithms, and utilities for C++
applications -
Changes:
pbcopper (0.0.1+20161202-2) unstable; urgency=medium
.
* build with -fPIC
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
libpbcopper-dev - data structures, algorithms, and utilities for C++
applications -
Closes: 848122
Changes:
pbcopper (0.0.1+20161202-1) unstable; urgency=medium
.
* Initial release (Closes: #848122)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
pbdagcon - sequence consensus using directed acyclic graphs
Closes: 848755
Changes:
pbdagcon (0.3+20161121+ds-1) unstable; urgency=medium
.
* New upstream revision (upstream git 87f393f)
* Include repository'
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