Accepted blasr 5.3-2 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: blasr - mapping single-molecule sequencing reads Closes: 848541 848751 Changes: blasr (5.3-2) unstable; urgency=medium . * Use pbseqlib metapackage rather than depending on individual libraries * Build with pbbam (Closes: #848

Accepted pbseqlib 0~20161219-1 (source) into unstable

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libblasr - tools for aligning PacBio reads to target sequences libblasr-dev - tools for aligning PacBio reads to target sequences

Accepted pbseqlib 0~20160705-2 (source) into unstable

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libblasr - tools for aligning PacBio reads to target sequences libblasr-dev - tools for aligning PacBio reads to target sequences

Accepted poretools 0.6.0+dfsg-2 (source all) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: poretools - toolkit for nanopore nucleotide sequencing data poretools-data - toolkit for nanopore nucleotide sequencing data -- sample dataset Changes: poretools (0.6.0+dfsg-2) unstable; urgency=low

Accepted kmer 0~20150903+r2013-3 (source amd64 all) into unstable, unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: atac - genome assembly-to-assembly comparison kmer - suite of tools for DNA sequence analysis leaff - biological sequence library utilities and

Accepted python-intervaltree-bio 1.0.1-1 (source all) into unstable, unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-intervaltree-bio - Interval tree convenience classes for genomic data -- Python 2 li python3-intervaltree-bio - Interval tree convenience classes for genomic data

Accepted gridengine 8.1.9+dfsg-4 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-4 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilit

Accepted falcon 1.8.4-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: falcon - diploid-aware genome assembly of single-molecule sequencing reads Changes: falcon (1.8.4-1) unstable; urgency=medium . * debian/upstream/metadata: quote authors list * Imported Upstream version 1.8.4 * debian/co

Accepted python-cobra 0.5.6-1 (source) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-ba

Accepted kmer-tools 0~20150903+r2013-2 (source all amd64) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: kmer - suite of tools for DNA sequence analysis leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA seque

Accepted falcon 1.8.3-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: falcon - diploid-aware genome assembly of single-molecule sequencing reads Closes: 844974 Changes: falcon (1.8.3-1) unstable; urgency=medium . * Imported Upstream version 1.8.3 (Closes: #844974) * Update and refresh patche

Accepted smrtanalysis 0~20161126 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: smrtanalysis - software suite for single molecule, real-time sequencing smrtanalysis-dev - develepment libraries for smrtanalysis Changes: smrtanalysis (0~20161126) unstable; urgency=medium

Accepted gridengine 8.1.9+dfsg-3 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-3 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilit

Accepted ori 0.8.1+ds1-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 22 Nov 2016 22:37:01 -0800 Source: ori Binary: ori Architecture: source Version: 0.8.1+ds1-2 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui <a...@debian.org> Changed-By: Afif Elghraoui <a...@d

Accepted falcon 1.8.2-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: falcon - genome assembly toolkit falconkit - transitional package for the FALCON assembler Changes: falcon (1.8.2-1) unstable; urgency=medium . * debian/get-orig-source: handle symlinks pointing to directories

Accepted python-cobra 0.5.4-1 (source) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-ba

Accepted falcon 1.7.5-1 (source amd64 all) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: falcon - genome assembly toolkit falconkit - transitional package for the FALCON assembler Changes: falcon (1.7.5-1) unstable; urgency=medium . * Imported Upstream version 1.7.5 * Renamed source pack

Accepted sprai 0.9.9.21+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.21+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.21+dfsg Checksums-Sha1: 98f13a7a779a82fb0e812cb3ba39de61f

Accepted pbbam 0.7.0-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libpbbam - Pacific Biosciences binary alignment/map (BAM) library libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers) pbbamtools - processing Pacific Biosciences binary alignme

Accepted dascrubber 0~20160601-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads Closes: 841396 Changes: dascrubber (0~20160601-1) unstable; urgency=medium . * Initial release (Closes: #841396) Ch

Accepted sniffles 1.0.1+ds-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sniffles - structural variation caller using third-generation sequencing Changes: sniffles (1.0.1+ds-1) unstable; urgency=medium . * Imported Upstream version 1.0.1+ds Checksums-Sha1: 3eadf29dfca3dee13aca77c1ea905e622

Accepted pbdagcon 0~20160325+ds-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: pbdagcon - sequence consensus using directed acyclic graphs Changes: pbdagcon (0~20160325+ds-1) unstable; urgency=medium . * Imported Upstream version 0~20160325+ds (upstream git revision f19aed1) * Do n

Accepted blasr 5.3-1 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: blasr - mapping single-molecule sequencing reads Changes: blasr (5.3-1) unstable; urgency=medium . * Imported Upstream version 5.3 (upstream git revision 1baabc8 from 2016-09-12) * Find PB libraries in the default LD pa

Accepted pbseqlib 0~20160705-1 (source) into unstable

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libblasr - tools for aligning PacBio reads to target sequences libblasr-dev - tools for aligning PacBio reads to target sequences

Accepted pbbam 0.5.0-3 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libpbbam - Pacific Biosciences binary alignment/map (BAM) library libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers) pbbamtools - processing Pacific Biosciences binary alignme

Accepted python-cobra 0.5.2-1 (source) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-ba

Accepted circlator 1.4.0-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: circlator - circularize genome assemblies Changes: circlator (1.4.0-1) unstable; urgency=medium . * Imported Upstream version 1.4.0 * Bump python3-pymummer minimum version Checksums-Sha1: 7611cf820a9b0e56239b4f1fb263

Accepted fast5 0.5.8-1 (source all amd64) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxf

Accepted sniffles 1.0.0+ds-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sniffles - structural variation caller using third-generation sequencing Changes: sniffles (1.0.0+ds-1) unstable; urgency=medium . * Imported Upstream version 1.0.0+ds * Update patches * Update "clean&qu

Accepted dazzdb 1.0+20160930-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: dazzdb - manage nucleotide sequencing read data Changes: dazzdb (1.0+20160930-1) unstable; urgency=medium . * Imported Upstream version 1.0+20160930 * Update patches * Update Standards-Version * Use encrypt

Accepted daligner 1.0+20160927-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: daligner - local alignment discovery between long nucleotide sequencing read Changes: daligner (1.0+20160927-1) unstable; urgency=medium . * Imported Upstream version 1.0+20160927 (git ca167d3) * Update patche

Accepted mhap 2.1.1+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: mhap - locality-sensitive hashing to detect long-read overlaps Changes: mhap (2.1.1+dfsg-1) unstable; urgency=medium . * Imported Upstream version 2.1.1+dfsg * Remove duplicate word from package description Ch

Accepted python-pbcore 1.2.10+dfsg-1 (source) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Closes: 839346 Changes: python-pbcore (1

Accepted gridengine 8.1.9+dfsg-2 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilit

Accepted poretools 0.6.0+dfsg-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: poretools - toolkit for nanopore nucleotide sequencing data Closes: 836553 Changes: poretools (0.6.0+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.6.0+dfsg - Update package dependencies * Ref

Accepted gridengine 8.1.9+dfsg-2~exp5 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp5 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp5 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp5 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp4 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp4 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp4 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp4 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp3 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp3 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp3 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp3 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp2 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp2 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp2 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp2 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp1 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp1 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted gridengine 8.1.9+dfsg-2~exp1 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp1 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted circlator 1.3.0-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: circlator - circularize genome assemblies Changes: circlator (1.3.0-1) unstable; urgency=medium . * Remove second tarball and supporting code * Imported Upstream version 1.3.0 * Drop all patches * Build-depend

Accepted sprai 0.9.9.19+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.19+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.19+dfsg * Refresh patch Ch

Accepted nanopolish 0.5.0-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: nanopolish - consensus caller for nanopore sequencing data Changes: nanopolish (0.5.0-1) unstable; urgency=medium . * Imported Upstream version 0.5.0 - Refresh and update patches - Add build dependency

Accepted fast5 0.5.6-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers Closes: 832035 Changes: fast5 (0.5.6-1) unstable; urgency=medium . * Activate d/watch * Imported Upstream version 0.5.6 (Closes: #832035) * Upda

Accepted pbdagcon 0~20151114+git1d12e13+ds-3 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: pbdagcon - sequence consensus using directed acyclic graphs Closes: 831105 Changes: pbdagcon (0~20151114+git1d12e13+ds-3) unstable; urgency=low . * Bump Standards-Version to 3.9.8 * Update email addr

Accepted consensuscore2 0.13.0+20160719-1 (source) into unstable

: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libconsensuscore2-dev - generate consensus sequences for PacBio data -- development files python-consensuscore2 - generate consensus sequences for

Accepted python-pysam 0.9.1.4+ds-1 (source) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam

Accepted sga 0.10.14-3 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: sga- de novo genome assembler that uses string graphs Changes: sga (0.10.14-3) unstable; urgency=low . * Team upload. * Copy run-time depends into build-depends Checksums-Sha1: 01a2eeda99c55edb420fa0c5f96b6cee825ffd23 2058 s

Accepted pbbam 0.5.0-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libpbbam - Pacific Biosciences binary alignment/map (BAM) library libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers) pbbamtools - processing Pacific Biosciences binary alignme

Accepted python-cobra 0.4.2~b1-1 (source) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-ba

Accepted consensuscore 1.0.2-2 (source) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python-pbconsensuscore - algorithms for PacBio multiple sequence consensus

Accepted kineticstools 0.5.2+dfsg-2 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python-kineticstools - detection of DNA modifications (Pyth

Accepted pbgenomicconsensus 2.0.0+20160420-2 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: pbgenomicconsensus - Pacific Biosciences variant and consensus caller python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2) Closes: 83

Accepted mhap 2.1+dfsg-1 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: mhap - locality-sensitive hashing to detect long-read overlaps Changes: mhap (2.1+dfsg-1) unstable; urgency=medium . * Avoid dependency on graphics libraries by not using java:Depends * Imported Upstream version 2.1+dfsg

Accepted mhap 2.0+dfsg-1 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: mhap - locality-sensitive hashing to detect long-read overlaps Changes: mhap (2.0+dfsg-1) unstable; urgency=medium . * Update Standards-Version * Use https for VCS URLs * Adjust project homepage * Imported Upstream

Accepted gridengine 8.1.9+dfsg-1 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilit

Accepted python-avro 1.8.1+dfsg-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-avro - Apache Avro serialization system — Python 2 library python3-avro - Apache Avro serialization system — Python 3 library Changes: python-avro (1.8.1+dfsg-1) unstable; urgency=medium .

Accepted pbgenomicconsensus 2.0.0+20160420-1 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: pbgenomicconsensus - Pacific Biosciences variant and consensus caller python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2) Closes: 83

Accepted pbbam 0.5.0-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libpbbam - Pacific Biosciences binary alignment/map (BAM) library libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers) pbbamtools - processing Pacific Biosciences binary a

Accepted consensuscore2 0.12.0-1 (source amd64) into unstable, unstable

: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libconsensuscore2-dev - generate consensus sequences for PacBio data -- development files python-consensuscore2 - generate consensus sequences for PacBio da

Accepted consensuscore 1.0.2-1 (source amd64) into unstable, unstable

Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python-pbconsensuscore - algorithms for PacBio multiple sequen

Accepted kineticstools 0.5.2+dfsg-1 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python-kineticstools - detection of DNA modifications (Pyth

Accepted gridengine 8.1.8+dfsg-7 (source amd64 all) into unstable, unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source amd64 all Version: 8.1.8+dfsg-7 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client

Accepted adduser 3.115 (source) into unstable

hanged-By: Afif Elghraoui <a...@debian.org> Description: adduser- add and remove users and groups Closes: 508740 547911 611898 676356 685529 695997 697109 698483 712944 722583 756180 776203 811411 825610 825734 825770 825777 825778 825867 825876 825944 825973 826947 826965 827011 827012 82

Accepted falconkit 0.7-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: falconkit - genome assembly toolkit Changes: falconkit (0.7-1) unstable; urgency=medium . * Imported Upstream version 0.7 (git 349163e) * Remove max version limit for networkx * Don't install legacy py_scripts * Bu

Accepted sprai 0.9.9.18+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.18+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.18+dfsg Checksums-Sha1: 1abd9a35b9049d354e1d8551a87f27346

Accepted python-pysam 0.9.1+ds-1 (source) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam

Accepted sniffles 0.0.1+ds-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sniffles - structural variation caller using third-generation sequencing Closes: 827638 Changes: sniffles (0.0.1+ds-1) unstable; urgency=medium . * Initial release (Closes: #827638) Ch

Accepted sprai 0.9.9.17+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.17+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.17+dfsg * Suggest installation of make Ch

Accepted sprai 0.9.9.16+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.16+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.16+dfsg * Bump Standards-Version to 3.9.8 * Refresh and update pa

Accepted gridengine 8.1.8+dfsg-6 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilities for Grid

Accepted pbh5tools 0.8.0+dfsg-5 (source all amd64) into unstable, unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: pbh5tools - tools for manipulating Pacific Biosciences HDF5 files python-pbh5tools - tools for manipulating Pacific Biosciences HDF5 files -- Python 2 python-pbh5tools

Accepted python-et-xmlfile 1.0.1-2 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 Apr 2016 18:35:00 -0700 Source: python-et-xmlfile Binary: python-et-xmlfile python3-et-xmlfile Architecture: source all Version: 1.0.1-2 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui <a...@debian.

Accepted circlator 1.2.1-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: circlator - circularize genome assemblies Changes: circlator (1.2.1-1) unstable; urgency=medium . * Fix typo in d/upstream/metadata * Add explicit build-dependency on bwa with proper minimum version * Imported Upst

Accepted sprai 0.9.9.14+dfsg-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.14+dfsg-1) unstable; urgency=medium . * Imported Upstream version 0.9.9.14+dfsg * Refresh and update patch * Add README.source Ch

Accepted sprai 0.9.9.13+dfsg-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sprai - single-pass sequencing read accuracy improver Closes: 820851 Changes: sprai (0.9.9.13+dfsg-1) unstable; urgency=low . * Initial release (Closes: #820851) Checksums-Sha1: c57c1e9b6fc1391cf5e66a6237d726ded

Accepted python-et-xmlfile 1.0.1-1 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 Apr 2016 00:44:27 -0700 Source: python-et-xmlfile Binary: python-python-et-xmlfile python3-python-et-xmlfile Architecture: source all Version: 1.0.1-1 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui

Accepted bcftools 1.3.1-1 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: bcftools - genomic variant calling and manipulation of VCF/BCF files Changes: bcftools (1.3.1-1) unstable; urgency=medium . * Imported Upstream version 1.3.1 * Remove backported patches * Refresh remaining patches *

Accepted python-pbcommand 0.3.22-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pbcommand - common command-line interface for Pacific Biosciences analysis mo Changes: python-pbcommand (0.3.22-2) unstable; urgency=medium . * Fix installation of manpage. Ch

Accepted python-pymummer 0.7.1-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python3-pymummer - Python 3 interface to MUMmer Changes: python-pymummer (0.7.1-1) unstable; urgency=low . * Update Standards-Version * Imported Upstream version 0.7.1 Ch

Accepted python-pbcommand 0.3.22-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pbcommand - common command-line interface for Pacific Biosciences analysis mo Changes: python-pbcommand (0.3.22-1) unstable; urgency=medium . * Imported Upstream version 0.3.22 * Bump copyright yea

Accepted smrtanalysis 0~20160416 (source all) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: smrtanalysis - software suite for single molecule, real-time sequencing smrtanalysis-dev - develepment libraries for smrtanalysis Closes: 787977 Changes: smrtanalysis (0~20160416) unstable; ur

Accepted pyconfigure 0.2.3-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 20 Apr 2016 22:04:39 -0700 Source: pyconfigure Binary: pyconfigure Architecture: source Version: 0.2.3-1 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui <a...@debian.org> Changed-By: Afif Elg

Accepted python-pbcore 1.2.9+dfsg-1 (source) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Changes: python-pbcore (1.2.9+dfsg-1) unsta

Accepted gridengine 8.1.8+dfsg-5 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilities for Grid

Accepted gridengine 8.1.8+dfsg-4 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilities for Grid

Accepted python-avro 1.8.0+dfsg-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-avro - Apache Avro serialization system — Python 2 library python3-avro - Apache Avro serialization system — Python 3 library Closes: 820201 Changes: python-avro (1.8.0+dfsg-2) unstable;

Accepted bcftools 1.3-3 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: bcftools - genomic variant calling and manipulation of VCF/BCF files Closes: 812268 Changes: bcftools (1.3-3) unstable; urgency=medium . * Backport upstream patch to fix build on arm64, armel, and ppc64el (Closes: #81226

Accepted sbmltoolbox 4.1.0-3 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: sbmltoolbox - libsbml toolbox for octave and matlab Closes: 819263 Changes: sbmltoolbox (4.1.0-3) unstable; urgency=low . * Team upload. * Switch package VCS to git * Bump Standards-Version * Use reproduc

Accepted artemis 16.0.0+dfsg-5 (source) into unstable

org> Changed-By: Afif Elghraoui <a...@debian.org> Description: artemis- genome browser and annotation tool Closes: 808851 Changes: artemis (16.0.0+dfsg-5) unstable; urgency=medium . [ Steffen Moeller and Jon Ison ] * Introduced EDAM annotation . [ Sascha Steinbiss ] * Bu

Accepted python-cobra 0.4.1-1 (source) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-ba

Accepted circlator 1.2.0-1 (source all) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: circlator - circularize genome assemblies Closes: 818575 Changes: circlator (1.2.0-1) unstable; urgency=medium . * Initial release (Closes: #818575) Checksums-Sha1: 087e1a6a1caa10be8d37867ea05c56fe28b6b446 2442 circl

Accepted gridengine 8.1.8+dfsg-3 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilities for Grid

Accepted gridengine 8.1.8+dfsg-2 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilities for Grid

Accepted gridengine 8.1.8+dfsg-1 (source amd64 all) into experimental, experimental

libdrmaa1.0-ruby Architecture: source amd64 all Version: 8.1.8+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-de...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: gridengine-client - Utilit

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