Bug#837345: ITP: r-cran-png -- GNU R package to read and write PNG images

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-png Version : 0.1-7 Upstream Author : Simon Urbanek * URL : https://cran.r-project.org/web/packages/png * License : GPL Programming Lang: GNU R Description : GNU R package to

Bug#837344: ITP: r-cran-filehash -- GNU R simple key-value database

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-filehash Version : 2.3 Upstream Author : Roger D. Peng * URL : http://cran.r-project.org/web/packages/filehash * License : GPL Programming Lang: GNU R Description : GNU R

Bug#837342: ITP: r-cran-testit -- simple package for testing GNU R packages

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-testit Version : 0.5 Upstream Author : Yihui Xie * URL : http://cran.r-project.org/web/packages/testit * License : GPL Programming Lang: GNU R Description : simple package

Bug#836956: ITP: metaphlan2-data -- data package for Metagenomic Phylogenetic Analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: metaphlan2-data Version : 2.6.0 Upstream Author : Duy Tin Truong, Nicola Segata and Curtis Huttenhower * URL : https://bitbucket.org/biobakery/metaphlan2/downloads * License : expat

Bug#836914: ITP: rapmap -- rapid sensitive and accurate DNA read mapping via quasi-mapping

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: rapmap Version : 0.3.0 Upstream Author : COMputational BIology and Network Evolution lab * URL : https://github.com/COMBINE-lab/RapMap * License : GPL Programming Lang: C Description

Bug#835935: ITP: pirs -- Profile based Illumina pair-end Reads Simulator

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: pirs Version : 2.0.2 Upstream Author : BGI * URL : https://github.com/galaxy001/pirs * License : BSD Programming Lang: C++ Description : Profile based Illumina pair-end Reads

Bug#835579: ITP: r-bioc-biomformat -- GNU R interface package for the BIOM file format

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-biomformat Version : 1.0.2 Upstream Author : Paul J. McMurdie * URL : http://www.bioconductor.org/packages/release/bioc/html/biomformat.html * License : GPL Programming Lang: GNU

Bug#835135: ITP: r-bioc-metagenomeseq -- GNU R statistical analysis for sparse high-throughput sequencing

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-metagenomeseq Version : 1.14.2 Upstream Author : Joseph N. Paulson * URL : http://www.bioconductor.org/packages/release/bioc/html/metagenomeSeq.html * License : Artistic-2.0

Bug#835087: ITP: r-cran-cairo -- GNU R graphics device using cairo graphics library

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-cairo Version : 1.5-9 Upstream Author : Simon Urbanek * URL : http://cran.r-project.org/web/packages/Cairo * License : GPL Programming Lang: GNU R Description : GNU R

Bug#834720: ITP: r-bioc-savr -- GNU R parse and analyze Illumina SAV files

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-savr Version : 1.10.0 Upstream Author : R. Brent Calder * URL : http://bioconductor.org/packages/release/bioc/html/savR.html * License : AGPL Programming Lang: GNU R Description

Re: copyright precision

On Tue, Aug 16, 2016 at 10:13:30PM +0500, Andrey Rahmatullin wrote: > On Tue, Aug 16, 2016 at 02:30:58PM +0200, Ole Streicher wrote: > > I always use this as one argument when it comes to "Why should be care > > about Debian? Our users use something else", that packaging includes a > > careful revi

Re: copyright precision

On Tue, Aug 16, 2016 at 10:59:09AM +0500, Andrey Rahmatullin wrote: > > Not because we are legally bound to do so, but because we want to do our > > job as distributors properly. We appreciate good quality packaging! > It's at least worth a discussion whether nitpicking at d/copyright is > really

Re: copyright precision

Hi Joachim and Simon, On Thu, Aug 11, 2016 at 01:25:14PM -0400, Joachim Breitner wrote: > > I question the value of precise debian/copyright files, or at least > question the effort-to-value ratio. The legal situation is generally > not affected by whether we have course or fine copyright files,

Bug#834208: ITP: physamp -- sample sequence alignment according to its corresponding phylogenetic tree

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: physamp Version : 0.2.0 Upstream Author : Julien Dutheil * URL : http://biopp.univ-montp2.fr/repos/sources/physamp * License : GPL Programming Lang: C++ Description : sample

Re: liblemon_1.3.1+dfsg-1_amd64.changes REJECTED [and 2 more messages]

Hi Ian, On Tue, Aug 09, 2016 at 03:33:16PM +0100, Ian Jackson wrote: > Andreas Tille writes ("Re: liblemon_1.3.1+dfsg-1_amd64.changes REJECTED [and > 2 more messages]"): > > On Tue, Aug 09, 2016 at 01:30:39PM +0100, Ian Jackson wrote: > > > Are you really saying t

Re: liblemon_1.3.1+dfsg-1_amd64.changes REJECTED [and 2 more messages]

On Tue, Aug 09, 2016 at 01:30:39PM +0100, Ian Jackson wrote: > > I don't think you should. I believe Thorsten is overreaching in asking > > you to do that. > > Are you really saying that it is not necessary for the .deb to contain > the authorship and copyright notices for the contents of the pac

How to specify files not in source package in d/copyright (Was: liblemon_1.3.1+dfsg-1_amd64.changes REJECTED)

Hi, On Sat, Aug 06, 2016 at 05:00:09PM +, Thorsten Alteholz wrote: > as you somehow add jquery.js to your doc-package, please add its license > to your debian/copyright. The jquery.js is installed by doxygen in the documentation process. It does not belong to the source package (the full au

Bug#833548: ITP: liblemon -- Library for Efficient Modeling and Optimization in Networks

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: liblemon Version : 1.3.1 Upstream Author : Egerváry Jenő Kombinatorikus Optimalizálási Kutatócsoport * URL : https://lemon.cs.elte.hu/trac/lemon/wiki * License : Boost-1.0 Programming Lang

Please raise your opinion to package size and the given options to restrict it (Was: Bug#833388: ITP: metaphlan2 -- Metagenomic Phylogenetic Analysis)

allel I'm discussing options with upstream (https://lists.debian.org/debian-med/2016/08/msg00036.html). Kind regards Andreas. On Wed, Aug 03, 2016 at 09:00:05PM +0200, Andreas Tille wrote: > Package: wnpp > Severity: wishlist > Owner: Andreas Tille > > * Package name

Bug#833388: ITP: metaphlan2 -- Metagenomic Phylogenetic Analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: metaphlan2 Version : 2.5.0 Upstream Author : Nicola Segata * URL : https://bitbucket.org/nsegata/metaphlan2/wiki/Home * License : MIT Programming Lang: Python Description

Bug#833387: ITP: mapdamage -- tracking and quantifying damage patterns in ancient DNA sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: mapdamage Version : 2.0.6 Upstream Author : Jónsson H, Ginolhac A, Schubert M, Johnson P, Orlando L. * URL : https://github.com/ginolhac/mapDamage * License : MIT Programming Lang: Python

Re: Fwd: ITP: form -- Symbolic manipulation system

Hi, I'd recommend to maintain this package in the Debian Science team. Kind regards Andreas. On Wed, Aug 03, 2016 at 03:51:14PM +0200, gurkan wrote: > forgot the cc during itp... > > Original Message > Subject: ITP: form -- Symbolic manipulation system > Date: 29.07.201

Bug#833359: ITP: lefse -- determine features of organisms, clades, taxonomic units, genes

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: lefse Version : 1.0+20160802 Upstream Author : Nicola Segata * URL : https://bitbucket.org/biobakery/biobakery/wiki/lefse * License : expat Programming Lang: Python Description

Bug#832950: ITP: hilive -- realtime alignment of Illumina reads

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: hilive Version : 0.0+20150926 Upstream Author : Martin S. Lindner * URL : https://sourceforge.net/projects/hilive/ * License : BSD Programming Lang: C++ Description : realtime

Bug#832754: ITP: adapterremoval -- rapid adapter trimming, identification, and read merging of gene sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: adapterremoval Version : 2.1.7 Upstream Author : Mikkel Schubert, Stinus Lindgreen and Ludovic Orlando * URL : https://github.com/MikkelSchubert/adapterremoval * License : GPL Programming

Bug#832613: ITP: kronatools -- explore hierarchical metagenomic data with zoomable pie charts

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: kronatools Version : 2.7 Upstream Author : Brian Ondov, Nicholas Bergman, and Adam Phillippy * URL : https://github.com/marbl/Krona/wiki * License : BSD Programming Lang: Perl, JS

Bug#832165: ITP: ncbi-vdb -- libraries for using data in the INSDC Sequence Read Archives

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: ncbi-vdb Version : 2.7.0 Upstream Author : National Center for Biotechnology Information * URL : https://github.com/ncbi/ncbi-vdb * License : public domain Programming Lang: C

Bug#832005: ITP: r-cran-tibble -- GNU R Simple Data Frames

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-tibble Version : 1.1 Upstream Author : Hadley Wickham, Romain Francois, Kirill Müller, RStudio * URL : https://cran.r-project.org/web/packages/tibble * License : MIT/X Programming

Bug#831995: ITP: parsnp -- rapid core genome multi-alignment

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: parsnp Version : 1.2 Upstream Author : Todd J Treangen * URL : https://github.com/marbl/parsnp * License : BSD Programming Lang: C, Python Description : rapid core genome multi

Bug#830475: ITP: r-cran-treescape -- GNU R Statistical Exploration of Landscapes of Phylogenetic Trees

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-treescape Version : 1.9.17 Upstream Author : Thibaut Jombart, Michelle Kendall, Jacob Almagro-Garcia, Caroline Colijn * URL : https://cran.r-project.org/web/packages/treescape/ * License

Bug#830217: ITP: r-cran-irlba -- GNU R fast truncated SVD, PCA and symmetric eigendecomposition

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-irlba Version : 2.0.0 Upstream Author : Bryan W. Lewis * URL : https://cran.r-project.org/web/packages/irlba * License : GPL Programming Lang: GNU R Description : GNU R fast

Bug#830197: ITP: r-cran-gridbase -- GNU R Integration of base and grid graphics

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-gridbase Version : 0.4-7 Upstream Author : Paul Murrell * URL : https://cran.r-project.org/web/packages/gridBase * License : GPL Programming Lang: GNU R Description : GNU R

Bug#830059: ITP: r-cran-rlumshiny -- GNU R 'Shiny' Applications for the R Package 'Luminescence'

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rlumshiny Version : 0.1.0 Upstream Author : Christoph Burow * URL : https://cran.r-project.org/web/packages/RLumShiny * License : GPL Programming Lang: GNU R Description

Bug#829665: ITP: r-cran-luminescence -- GNU R comprehensive luminescence dating data analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-luminescence Version : 0.6.0 Upstream Author : Sebastian Kreutzer * URL : https://cran.r-project.org/web/packages/Luminescence * License : GPL Programming Lang: GNU R

Bug#829663: ITP: r-cran-googlevis -- GNU R Interface to Google Charts

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-googlevis Version : 0.6.0 Upstream Author : Markus Gesmann * URL : https://cran.r-project.org/web/packages/googleVis * License : GPL Programming Lang: GNU R Description : GNU

Bug#829585: ITP: r-cran-shape -- GNU R functions for plotting graphical shapes, colors

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-shape Version : 1.4.2 Upstream Author : Karline Soetaert * URL : https://cran.r-project.org/web/packages/shape * License : GPL Programming Lang: GNU R Description : GNU R

Bug#829580: ITP: r-cran-raster -- GNU R geographic data analysis and modeling

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-raster Version : 2.5-8 Upstream Author : Robert J. Hijmans * URL : https://cran.r-project.org/web/packages/raster * License : GPL Programming Lang: GNU R Description : GNU R

Bug#829574: ITP: r-cran-minpack.lm -- GNU R Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-minpack.lm Version : 1.2-0 Upstream Author : Katharine M. Mullen * URL : https://cran.r-project.org/web/packages/minpack.lm * License : GPL Programming Lang: GNU R Description

Re: Cudos to ftpmaster

On Mon, Jul 04, 2016 at 11:10:31AM +0100, Ian Jackson wrote: > > Thanks a lot and keep on the great work > > Heh. We should upload more stuff! :-) I'm working on this. :-P Kind regards Andreas. -- http://fam-tille.de

Bug#829567: ITP: r-cran-bbmle -- GNU R tools for general maximum likelihood estimation

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-bbmle Version : 1.0.18 Upstream Author : Ben Bolker * URL : https://cran.r-project.org/web/packages/bbmle * License : GPL Programming Lang: GNU R Description : GNU R tools

Cudos to ftpmaster

Hi, when looking at the Debian NEW queue[1] this morning for a moment I had the impression to be on a false page. Its fitting on a single page currently. For me that's a good reason to send a big thanks to the great ftpmasters. Currently its real fun to push something to new! Thanks a lot and

Bug#829303: ITP: r-cran-scatterd3 -- GNU R D3 JavaScript Scatterplot from R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-scatterd3 Version : 0.6.2 Upstream Author : Julien Barnier, Kent Russell * URL : https://cran.r-project.org/web/packages/scatterD3 * License : GPL Programming Lang: GNU R

Bug#829219: ITP: r-cran-ellipse -- GNU R functions for drawing ellipses and ellipse-like confidence regions

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-ellipse Version : 0.3-8 Upstream Author : Duncan Murdoch * URL : https://cran.r-project.org/web/packages/ellipse * License : GPL Programming Lang: GNU R Description : GNU R

Bug#829216: ITP: r-cran-shinybs -- GNU R Twitter bootstrap components for Shiny

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-shinybs Version : 0.61 Upstream Author : Eric Bailey * URL : https://cran.r-project.org/web/packages/shinyBS * License : GPL Programming Lang: GNU R Description : GNU R

Bug#829132: ITP: r-cran-rglwidget -- GNU R 'rgl' in 'htmlwidgets' Framework

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rglwidget Version : 0.1.1434 Upstream Author : Duncan Murdoch * URL : https://cran.r-project.org/web/packages/rglwidget * License : GPL Programming Lang: GNU R Description

Bug#828962: ITP: r-cran-adephylo -- GNU R exploratory analyses for the phylogenetic comparative method

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-adephylo Version : 1.1-6 Upstream Author : Thibaut Jombart * URL : https://cran.r-project.org/web/packages/adegenet/ * License : GPL Programming Lang: GNU R Description : GNU

Bug#828860: ITP: r-cran-htmlwidgets -- GNU R HTML Widgets

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-htmlwidgets Version : 0.6 Upstream Author : JJ Allaire * URL : https://cran.r-project.org/web/packages/htmlwidgets * License : MIT Programming Lang: GNU R Description : GNU R

Bug#828859: ITP: r-cran-fields -- GNU R tools for spatial data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-fields Version : 8.4-1 Upstream Author : Douglas Nychka, Reinhard Furrer, John Paige, Stephan Sain * URL : https://cran.r-project.org/web/packages/fields * License : GPL

Bug#828857: ITP: r-cran-distory -- GNU R distance between phylogenetic histories

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-distory Version : 1.4.2 Upstream Author : John Chakerian and Susan Holmes * URL : https://cran.r-project.org/web/packages/distory * License : BSD Programming Lang: GNU R

Bug#828844: ITP: r-cran-adegenet -- GNU R exploratory analysis of genetic and genomic data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-adegenet Version : 2.0.1 Upstream Author : Thibaut Jombart et al * URL : https://cran.r-project.org/web/packages/adegenet/ * License : GPL Programming Lang: GNU R Description

Bug#828787: ITP: libdisorder -- library for entropy measurement of byte streams and other data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libdisorder Version : 0.0.2 Upstream Author : Michael E. Locasto * URL : https://github.com/locasto/libdisorder * License : GPL Programming Lang: C Description : library for entropy

Bug#827992: ITP: phipack -- PHI test and other tests of recombination

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: phipack Version : 0.0.20160614 Upstream Author : David Bryant * URL : http://www.maths.otago.ac.nz/~dbryant/software/PhiPack.tar.gz * License : LGPL Programming Lang: C Description

Bug#827978: ITP: libfastahack -- library for indexing and sequence extraction from FASTA files

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libfastahack Version : 0.0+20160309 Upstream Author : Erik Garrison * URL : https://github.com/ekg/fastahack * License : GPL Programming Lang: C++ Description : library for indexing

Bug#827916: ITP: libsmithwaterman -- determine similar regions between two strings or genomic sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libsmithwaterman Version : 0.0+20151117 Upstream Author : Erik Garrison * URL : https://github.com/ekg/smithwaterman * License : GPL Programming Lang: C++ Description : determine

Bug#827728: ITP: r-cran-pheatmap -- GNU R package to create pretty heatmaps

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-pheatmap Version : 1.0.8 Upstream Author : Raivo Kolde * URL : http://cran.r-project.org/web/packages/pheatmap/ * License : GPL Programming Lang: GNU R Description : GNU R

Bug#826861: ITP: r-cran-mlbench -- GNU R Machine Learning Benchmark Problems

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-mlbench Version : 2.1-1 Upstream Author : Friedrich Leisch * URL : http://cran.r-project.org/web/packages/mlbench/ * License : GPL Programming Lang: GNU R Description : GNU R

Bug#826850: ITP: r-cran-mlmrev -- GNU R Examples from Multilevel Modelling Software Review

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-mlmrev Version : 1.0-6 Upstream Author : Steve Walker * URL : http://cran.r-project.org/web/packages/mlmRev/ * License : GPL Programming Lang: GNU R Description : GNU R

Bug#826236: ITP: garli -- phylogenetic analysis of molecular sequence data using maximum-likelihood

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: garli Version : 2.1 Upstream Author : Ashod Nakashian * URL : https://github.com/Ashod/garli * License : GPL Programming Lang: C Description : phylogenetic analysis of molecular

Bug#826111: ITP: srst2 -- Short Read Sequence Typing for Bacterial Pathogens

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: srst2 Version : 0.1.8 Upstream Author : Kathryn Holt * URL : https://github.com/katholt/srst2/ * License : BSD Programming Lang: Python Description : Short Read Sequence Typing for

Bug#826005: ITP: graphlan -- circular representations of taxonomic and phylogenetic trees

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: graphlan Version : 1.1 Upstream Author : Nicola Segata * URL : https://bitbucket.org/nsegata/graphlan * License : expat Programming Lang: Python Description : circular

Bug#825906: ITP: r-bioc-ensembldb -- GNU R utilities to create and use an Ensembl based annotation database

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-ensembldb Version : 1.4.3 Upstream Author : Johannes Rainer * URL : http://bioconductor.org/packages/release/bioc/html/ensembldb.html * License : LGPL Programming Lang: GNU R

Bug#825538: ITP: clapack -- Basic Linear Algebra Reference implementations library

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: clapack Version : 3.2.1 Upstream Author : The University of Tennessee * URL : http://www.netlib.org/clapack/ * License : BSD Programming Lang: C Description : Basic Linear Algebra

Bug#825114: ITP: r-bioc-annotationhub -- GNU R client to access AnnotationHub resources

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-annotationhub Version : 2.4.2 Upstream Author : Martin Morgan, Marc Carlson, Dan Tenenbaum, Sonali Arora * URL : http://bioconductor.org/packages/release/bioc/html/AnnotationHub.html

Bug#824805: ITP: r-bioc-go.db -- annotation maps describing the entire Gene Ontology

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-go.db Version : 3.3.0 Upstream Author : Marc Carlson * URL : http://bioconductor.org/packages/release/data/annotation/html/GO.db.html * License : Artistic-2.0 Programming Lang: GNU

Bug#824754: ITP: r-cran-princurve -- fit a principal curve in arbitrary dimension

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-princurve Version : 1.1-12-1 Upstream Author : Andreas Weingessel * URL : http://cran.r-project.org/web/packages/princurve/ * License : GPL Programming Lang: GNU R Description

Bug#824448: ITP: r-bioc-interactivedisplaybase -- base package for enabling powerful shiny web displays of Bioconductor objects

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-bioc-interactivedisplaybase Version : 1.10.2 Upstream Author : Shawn Balcome * URL : http://bioconductor.org/packages/release/bioc/html/interactiveDisplayBase.html * License : Artistic

Bug#824360: ITP: r-cran-hexbin -- GNU R hexagonal binning routines

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-hexbin Version : 1.27.1 Upstream Author : Edzer Pebesma * URL : http://cran.r-project.org/web/packages/hexbin/ * License : GPL Programming Lang: GNU R Description : GNU R

Bug#823920: ITP: jmodeltest -- HPC selection of models of nucleotide substitution

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: jmodeltest Version : 2.1.10 Upstream Author : Diego Darriba * URL : https://github.com//ddarriba/jmodeltest2 * License : GPL Programming Lang: Java Description : HPC selection of

Bug#823396: ITP: beast2-mcmc -- Bayesian MCMC phylogenetic inference

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: beast2-mcmc Version : 2.4.1 Upstream Author : Alexei Drummond , Andrew Rambaut * URL : https://github.com/CompEvol/beast2 * License : LGPL Programming Lang: Java Description

Bug#823381: ITP: r-cran-markdown -- GNU R package providing R bindings to the Sundown Markdown rendering library

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-markdown Version : 0.7.7 Upstream Author : Yihui Xie * URL : https://cran.r-project.org/web/packages/markdown * License : GPL Programming Lang: R Description : GNU R package

Bug#822776: ITP: maffilter -- process genome alignment in the Multiple Alignment Format

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: maffilter Version : 1.1.0 Upstream Author : Julien Dutheil * URL : http://biopp.univ-montp2.fr/repos/sources/maffilter/ * License : CeCILL Programming Lang: C++ Description

Bug#821248: ITP: fgallery -- modern, minimalist javascript photo gallery

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: fgallery Version : 1.8.1 Upstream Author : "Yuri D’Elia" * URL : https://www.thregr.org/~wavexx/software/fgallery/ * License : GPL Programming Lang: Perl Description

Bug#821247: ITP: facedetect -- simple face detector for batch processing

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: facedetect Version : 0.0.+20150428 Upstream Author : "Yuri D’Elia" * URL : https://github.com/wavexx/facedetect * License : GPL Programming Lang: Python Description : s

Bug#821003: ITP: r-cran-goftest -- GNU R Classical Goodness-of-Fit Tests for Univariate Distributions

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-goftest Version : 1.0-3 Upstream Author : Adrian Baddeley * URL : http://cran.r-project.org/web/packages/goftest/ * License : GPL Programming Lang: GNU R Description : GNU R

Bug#820854: ITP: fsm-lite -- frequency-based string mining (lite)

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: fsm-lite Version : 1.0 Upstream Author : Niko Välimäki * URL : https://github.com/nvalimak/fsm-lite * License : GPL Programming Lang: C Description : frequency-based string mining

Bug#820810: ITP: art-nextgen-simulation-tools -- simulation tools to generate synthetic next-generation sequencing reads

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: art-nextgen-simulation-tools Version : 3.19.15 Upstream Author : Weichun Huang * URL : http://www.niehs.nih.gov/research/resources/software/biostatistics/art/ * License : GPL Programming

Re: Packaging of static libraries

On Sun, Apr 10, 2016 at 07:12:05PM +0500, Andrey Rahmatullin wrote: > On Sun, Apr 10, 2016 at 09:05:36AM +0200, Andreas Tille wrote: > > whether it is advisable to try hard to provide static libraries even if > > upstream build system does not easily provide both. > Note that it

Packaging of static libraries

Hi, when I was asking for help to create shared *and* static library on Debian Mentors list[0] I received two answers that static libraries are not needed. My reply Policy says[1]: The static library (libraryname.a) is usually provided in addition to the shared version. I have no go

Bug#820547: ITP: harvest-tools -- archiving and postprocessing for reference-compressed genomic multi-alignments

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: harvest-tools Version : 1.2 Upstream Author : Todd Treangen * URL : https://github.com/marbl/harvest-tools * License : BSD Programming Lang: C++, Python Description : archiving and

Bug#820520: ITP: r-cran-phylobase -- GNU R base package for phylogenetic structures and comparative data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-phylobase Version : 0.8.2 Upstream Author : Francois Michonneau * URL : https://cran.r-project.org/web/packages/phylobase/ * License : GPL-2+ Programming Lang: R Description

Re: Overall bitrot, package reviews and fast(er) unmaintained package removals

Hi Ben, On Thu, Apr 07, 2016 at 01:52:19AM +0100, Ben Hutchings wrote: > > For the packages in Debian Science and Debian Med I tend to think that > > it accommodates a bunch of packages that mostly are of historic value > > now. People may  use them to compare how well their new methods compare >

Re: Overall bitrot, package reviews and fast(er) unmaintained package removals

On Thu, Apr 07, 2016 at 01:08:49PM +0200, Ondřej Surý wrote: > On Thu, Apr 7, 2016, at 12:20, Ian Jackson wrote: > > > > That is, email debian-devel and the maintainer (again) with a very > > respectful mail saying you think the package needs help, that you're > > happy to help, and that unless th

Bug#820432: ITP: r-cran-rnexml -- GNU R package for semantically rich I/O for the 'NeXML' format

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rnexml Version : 2.0.6-1 Upstream Author : Carl Boettiger * URL : https://cran.r-project.org/web/packages/RNeXML/ * License : BSD-3-clause Programming Lang: R Description

Bug#820316: ITP: r-cran-tidyr -- GNU R package to easily tidy data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-tidyr Version : 0.4.1 Upstream Author : Hadley Wickham * URL : https://cran.r-project.org/web/packages/tidyr/ * License : MIT Programming Lang: R Description : GNU R package

Re: debhelper compat 10 ready for testing (debhelper/9.20160403)

Hi Niels, thanks a lot for working on debhelper! On Sun, Apr 03, 2016 at 10:12:46AM +, Niels Thykier wrote: > A couple of notes: > > * On autoreconf vs config.{sub,guess}: The default sequence now >always updates config.{sub,guess} even if autoreconf would not. >- There is a separat

Bug#819674: ITP: seer -- genomic sequence element (kmer) enrichment analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: seer Version : 1.1.0 Upstream Author : John Lees * URL : https://github.com/johnlees/seer * License : GPL-2+ Programming Lang: C++ Description : genomic sequence element (kmer

Bug#819671: ITP: r-cran-taxize -- GNU R taxonomic information from around the web

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-taxize Version : 0.7.4 Upstream Author : Scott Chamberlain * URL : https://cran.r-project.org/web/packages/taxize/ * License : MIT Programming Lang: GNU R Description : GNU R

Bug#819629: ITP: surankco -- Supervised Ranking of Contigs in de novo Assemblies

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: surankco Version : 0.0.r5 Upstream Author : Mathias Kuhring * URL : https://sourceforge.net/projects/surankco * License : BSD Programming Lang: GNU R / Java Description : Supervised

Bug#819553: ITP: r-cran-xml2 -- GNU R XML parser

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-xml2 Version : 0.1.2 Upstream Author : Hadley Wickham * URL : https://cran.r-project.org/web/packages/xml2/ * License : MIT Programming Lang: GNU R Description : GNU R XML

Bug#819532: ITP: libgzstream -- provide functionality of zlib C-library in a C++ iostream

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libgzstream Version : 1.5 Upstream Author : Deepak Bandyopadhyay, Lutz Kettner * URL : http://www.cs.unc.edu/Research/compgeom/gzstream/ * License : LGPL Programming Lang: C

Bug#819363: ITP: r-cran-shiny -- GNU R web application framework

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-shiny Version : 0.13.1 Upstream Author : Winston Chang and others * URL : https://cran.r-project.org/web/packages/shiny/ * License : MIT Programming Lang: GNU R Description

Bug#819296: ITP: r-cran-rredlist -- GNU R IUCN Red List Client

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rredlist Version : 0.1.0-1 Upstream Author : Scott Chamberlain * URL : https://cran.r-project.org/web/packages/rredlist/ * License : MIT Programming Lang: GNU R Description

Bug#819226: ITP: r-cran-bold -- GNU R interface to Bold Systems for genetic barcode data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-bold Version : 0.3.0 Upstream Author : Scott Chamberlain * URL : https://cran.r-project.org/web/packages/bold/ * License : MIT Programming Lang: GNU R Description : GNU R

Bug#819086: ITP: r-cran-httr -- GNU R tools for working with URLs and HTTP

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-httr Version : 1.1.0 Upstream Author : Hadley Wickham * URL : https://cran.r-project.org/web/packages/httr/ * License : MIT Programming Lang: GNU R Description : GNU R tools

Bug#819070: ITP: r-cran-htmltools -- r-cran-htmltools

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-htmltools Version : 0.3.5 Upstream Author : Joe Cheng * URL : https://cran.r-project.org/web/packages/shiny/ * License : GPL-2+ Programming Lang: GNU R Description : r-cran

Bug#819068: ITP: r-cran-adegraphics -- GNU R lattice-based package for the representation of multivariate data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-adegraphics Version : 1.0-5 Upstream Author : Aurélie Siberchicot * URL : https://cran.r-project.org/web/packages/adegraphics/ * License : GPL-2+ Programming Lang: GNU R

Bug#819008: ITP: r-cran-openssl -- GNU R toolkit for encryption, signatures and certificates based on OpenSSL

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-openssl Version : 0.9.2 Upstream Author : Jeroen Ooms * URL : https://cran.r-project.org/web/packages/openssl/ * License : MIT Programming Lang: GNU R Description : GNU R

Bug#819001: ITP: r-cran-curl -- GNU R modern and flexible web client for R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-curl Version : 0.9.6 Upstream Author : Jeroen Ooms * URL : https://cran.r-project.org/web/packages/curl/ * License : MIT Programming Lang: GNU R Description : GNU R modern

Bug#818989: ITP: r-cran-r6 -- GNU R classes with reference semantics

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-r6 Version : 2.1.2 Upstream Author : Winston Chang * URL : https://cran.r-project.org/web/packages/R6/ * License : MIT Programming Lang: GNU R Description : GNU R classes

Bug#818985: ITP: r-cran-assertthat -- GNU R easy pre and post assertions

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-assertthat Version : 0.1 Upstream Author : Hadley Wickham * URL : https://cran.r-project.org/web/packages/assertthat/ * License : GPL Programming Lang: GNU R Description

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