Accepted minia 1.6906-2 (source) into unstable

hanged-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: minia - short-read biological sequence assembler Changes: minia (1.6906-2) unstable; urgency=medium . * Team upload. . [Nadiya Sitdykova] * add autopkgtest test-suite . [ Andreas Tille ] * debhelper 10

Accepted parsinsert 1.04-3 (source amd64 all) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: parsinsert - Parsimonious Insertion of unclassified sequences into phylogeneti parsinsert-testdata - Test data for parsinsert Changes: parsinsert (1.04-3) unstable; urgency=medium . *

Accepted cassiopee 1.0.5-2 (source amd64 all) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library

Accepted grinder 0.5.4-2 (source all) into unstable

org> Changed-By: Nadiya Sitdykova <rovensa...@gmail.com> Description: grinder- Versatile omics shotgun and amplicon sequencing read simulator Changes: grinder (0.5.4-2) unstable; urgency=medium . * Team upload. . [ Steffen Moeller ] * debian/uptream/metadata: Adde

Accepted kraken 0.10.5~beta-4 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: kraken - assigning taxonomic labels to short DNA sequences Changes: kraken (0.10.5~beta-4) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite *

Accepted bamtools 2.4.1+dfsg-2 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs

Accepted trimmomatic 0.36+dfsg-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: trimmomatic - flexible read trimming tool for Illumina NGS data Changes: trimmomatic (0.36+dfsg-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * add autopkgtest test-suite

Accepted ray 2.3.1-5 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: ray- de novo genome assemblies of next-gen sequencing data ray-doc- documentation for ray parallel de novo genome assembler ray-extra - Scripts and XSL sheets for post-processing for ray C

Accepted poa 2.0+20060928-5 (source amd64) into unstable

org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: poa- Partial Order Alignment for multiple sequence alignment Changes: poa (2.0+20060928-5) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * add autopkgtest test-suite . [ A

Accepted mrbayes 3.2.6+dfsg-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: mrbayes- Bayesian Inference of Phylogeny mrbayes-doc - Bayesian Inference of Phylogeny - manual mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version Changes: mrbayes (3.2.6+dfsg

Accepted bwa 0.7.15-5 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: bwa- Burrows-Wheeler Aligner libbwa-dev - Burrows-Wheeler Aligner source files Closes: 853859 Changes: bwa (0.7.15-5) unstable; urgency=medium . * Team upload. . [Nadiya Sitdykova] * Add patch

Accepted tophat 2.1.1+dfsg-3 (source) into unstable

org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: tophat - fast splice junction mapper for RNA-Seq reads Changes: tophat (2.1.1+dfsg-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite . [ Andreas Tille ]

Accepted progressivemauve 1.2.0+4713-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: progressivemauve - multiple genome alignment algorithms Changes: progressivemauve (1.2.0+4713-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * add autopkgtes

Accepted seqtk 1.2-2 (source amd64) into unstable

org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: seqtk - Fast and lightweight tool for processing sequences in the FASTA o Changes: seqtk (1.2-2) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite . [ A

Accepted probalign 1.4-6 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: probalign - multiple sequence alignment using partition function posterior pr Changes: probalign (1.4-6) unstable; urgency=medium . * Team upload. . [ Sascha Steinbiss ] * Enable full hardening. .

Accepted abyss 2.0.2-3 (source amd64) into unstable

org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: abyss - de novo, parallel, sequence assembler for short reads Changes: abyss (2.0.2-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add simple autopkgtest test-suite. . [ Ste

Accepted mothur 1.39.5-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: mothur - sequence analysis suite for research on microbiota mothur-mpi - mpi-enabled binary for mothur Changes: mothur (1.39.5-2) unstable; urgency=medium . * Team upload. . [ Nadiya Sitydykov

Accepted mira 4.9.6-3 (source amd64 all) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-rfam-12s-rrna - extract of RFAM 12 rRNA database Changes: m

Accepted proda 1.0-11 (source amd64) into unstable

org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: proda - multiple alignment of protein sequences Changes: proda (1.0-11) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova] * Add autopkgtest test-suite . [ Andreas Tille ] * Move packag

Accepted fastx-toolkit 0.0.14-4 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Changes: fastx-toolkit (0.0.14-4) unstable; urgency=low . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite

Accepted last-align 830-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: last-align - genome-scale comparison of biological sequences Changes: last-align (830-2) unstable; urgency=low . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite Ch

Accepted picard-tools 2.8.1+dfsg-2 (source all) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmailc.om> Description: libpicard-java - Java library to manipulate SAM and BAM files libpicard-java-doc - Documentation for the java picard library picard-tools - Command line tools to ma

Accepted mapdamage 2.0.6+dfsg-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Nadiya Sitdykova <rovensk...@gmail.com> Description: mapdamage - tracking and quantifying damage patterns in ancient DNA sequences Closes: 848326 859090 859091 Changes: mapdamage (2.0.6+dfsg-2) unstable; urgency=medium . * Team upload . [ Andreas Tille ]