...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libmule-java-2.0 - Mule Enterprise Service Bus Java libraries
Closes: 638384
Changes:
mule (2.0.1-3) unstable; urgency=low
.
* Team upload.
.
[ Miguel Landaeta ]
* Replace Build-Depends on Spring Framework 2.5
and *-RPC).
Have a nice day,
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the dkms package, and C(A)
would be the headers for A.
Dear Harald and everybody,
just for the record, this proposition looks very similar to another
proposition about « conditional recommends » in May this year.
https://lists.debian.org/1305977099.4715.47.camel@tomoyo
Have a nice day,
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Le Sun, Aug 21, 2011 at 12:51:22PM +0900, Charles Plessy a écrit :
just for the record, this proposition looks very similar to another
proposition about « conditional recommends » in May this year.
https://lists.debian.org/1305977099.4715.47.camel@tomoyo
Here is the correct URL: http
Changed-By: Charles Plessy ple...@debian.org
Description:
filo - FILe and stream Operations
Closes: 629641
Changes:
filo (1.1+2011020401.2) unstable; urgency=low
.
* debian/copyright:
[09cf1810] Documented missing files, licensed under the GNU GPL version 2.
[29eb9074
/share/doc, especially when they are all contained in a
dedicated package that is not dispensable.
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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of the components featured in their regression tests.
Have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 16 Aug 2011 08:41:24 +0900
Source: m2crypto
Binary: python-m2crypto
Architecture: source amd64
Version: 0.21.1-2
Distribution: unstable
Urgency: low
Maintainer: Dima Barsky d...@debian.org
Changed-By: Charles Plessy ple
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-bioc-limma - linear models for microarray data
Changes:
r-bioc-limma (3.8.3-1) unstable; urgency=low
.
* New upstream release.
* [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
ec579115e81927d54e032c96b8ea4c8739eb67c5
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
ssake - genomics application for assembling millions of very short DNA se
ssake-examples - example data for SSAKE, a genomic assembler of short reads
Changes:
ssake (3.8-1) unstable; urgency=low
.
* New upstream version 30
that it will not be able to allow to distinguish Build-Depends and
Build-Recommends, as apt-get -f install does not seem to install Recommends by
default.
Have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Changed-By: Charles Plessy ple...@debian.org
Description:
euca2ools - managing cloud instances for Eucalyptus
Closes: 576379 616802
Changes:
euca2ools (1.3.1-1) unstable; urgency=low
.
* New upstream release (closes: #576379).
- depend on python-m2crypto (= 0.20.2) and python
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sun, 14 Aug 2011 14:23:11 +0900
Source: m2crypto
Binary: python-m2crypto
Architecture: source amd64
Version: 0.21.1-1
Distribution: unstable
Urgency: low
Maintainer: Dima Barsky d...@debian.org
Changed-By: Charles Plessy ple
Le Wed, Aug 10, 2011 at 12:17:04PM +, Philipp Kern a écrit :
On 2011-08-10, Charles Plessy ple...@debian.org wrote:
# Matt Rodriguez, LBNL
#Copyright (c) 2003, The Regents of the University
possibilities I
see:
- In python-modules, with Subversion, or
- in collab-maint, with Git.
Dima or anybody else interested in participating, please let me know your
preferences. Otherwise I think I will go for collab-maint with Git.
Have a nice day,
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Charles Plessy
Debian Med packaging
Le Mon, Aug 08, 2011 at 11:37:22PM +0900, Charles Plessy a écrit :
Le Sun, Aug 07, 2011 at 11:58:48PM +0100, Dima Barsky a écrit :
Sorry for the delay, I was away for a while. I have to admit, I have not
paid
much attention to m2crypto lately, so if you or anybody else wants to pick
at the
bug reports and upload a new version in the next week or two.
Hi Dima,
thanks for the answer ! I will go ahead with the upload soon. But do not
hesitate to look at the bug reports, especially if you had contacts earlier
with Upstream.
Have a nice day,
--
Charles Plessy
Debian Med
. And the
stable Debian-Installer has much less security updates and point releases as
the Stable release itself, which hopefully means a small work load.
Have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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m2crypto package, and could take the
opportunity of an update to upload a package with an extended maintainer list.
Would you agree, and would there be other developers interested in maintaining
m2crypto ?
Have a nice week-end,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org
-By: Charles Plessy ple...@debian.org
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Closes: 636634
Changes:
mafft (6.857-1) unstable; urgency=low
.
* New upstream version.
* Enable multithread, correct FHS path (debian/rules).
* Removed
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
r-bioc-biobase (2.12.2-1) unstable; urgency=low
.
* New upstream release.
Checksums-Sha1:
bc23549c3515a077ae74f4fa31786a01f00c504f 1944 r-bioc-biobase_2.12.2-1
Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: (lib)snappy-java
Version : 1.0.3
Upstream Author : Taro L. Saito
URL : http://code.google.com/p/snappy-java/
License : Apache Licence Version 2.0
Programming Lang
, which opens a way to keep this file up to
date when kernels are updated, via a kernel hook.
Have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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containing
such files would help to progress towrards a procedure to create AMIs using
only material distributed in Debian.
Have a nice week-end,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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be to build them
entirely from material distributed in Debian. Luckily, as you have seen in
some other messages, it looks possible.
Cheers,
--
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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, grub, and perhaps other scripts are needed, and if they were wrapped in a
Debian package, then the production AMIs could be fully automated from whithin
the Debian operating system.
I am still a beginner in the field, but if help is needed, I volunteer to
co-maintain such a package.
--
Charles
Changed-By: Charles Plessy ple...@debian.org
Description:
seaview- Multiplatform interface for sequence alignment and phylogeny
Changes:
seaview (1:4.3.0-1) unstable; urgency=low
.
* New upstream version with SVG output.
* Built on FLTK 1.3 (debian/control).
* Corrected location
,
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in autoconf packages, it seems informally accepted to
ignore them completely. But there are no written guidelines explaining how
this tolerance can be expanded or not to other autogenerated files.
Have a nice day,
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Tsurumi, Kanagawa, Japan
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...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbio-graphics-perl - Generate GD images of Bio::Seq objects
Changes:
libbio-graphics-perl (2.24-1) unstable; urgency=low
.
* New usptream release.
* Replaced deprecated ‘’ by ‘’ in debian/control.
* Renamed
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Changes:
samtools (0.1.17-1) unstable; urgency=low
.
* New upstream release
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
Closes: 626761
Changes:
fastx-toolkit (0.0.13.1-1) unstable; urgency=low
.
* New upstream release (Closes: #626761).
* Incremented Standards-Version
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libgtextutils-dev - Gordon Text_utils library (development files)
libgtextutils0 - Gordon Text_utils library
Closes: 625365 626757
Changes:
libgtextutils (0.6.2-1) unstable; urgency=low
.
* New upstream
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-pvclust - Hierarchical Clustering with P-Values via Multiscale Bootstrap
Closes: 632002
Changes:
pvclust (1.2-2-1) unstable; urgency=low
.
* Initial release (Closes: #632002)
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-genetics - GNU R package for population genetics
Changes:
r-cran-genetics (1.3.6-2) unstable; urgency=low
.
* debian/control:
- (Build-)Depend on r-cran-mass, which provides r-cran-vr (LP: #755951
Changed-By: Charles Plessy ple...@debian.org
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (178-1) unstable; urgency=low
.
* New upstream release changing format of lastal output (r177).
Checksums-Sha1
Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: pvclust
Version : 1.2-2
Upstream Author : Ryota Suzuki suz...@ef-prime.com, Hidetoshi Shimodaira
sh...@is.titech.ac.jp
URL : http://www.is.titech.ac.jp/~shimo/prog/pvclust
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-qvalue - GNU R package for Q-value estimation for FDR control
Changes:
r-cran-qvalue (1.26.0-1) unstable; urgency=low
.
* New upstream version.
* debian/control:
- Allow uploade by Debian Maintainers.
- Use
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files
Changes:
libbio-samtools-perl (1.29-1) unstable; urgency=low
.
[ Charles Plessy ]
* (Build)-Depend on libbio-perl-perl instead of bioperl
Changed-By: Charles Plessy ple...@debian.org
Description:
phyml - Phylogenetic estimation using Maximum Likelihood
Changes:
phyml (2:20110526-1) unstable; urgency=low
.
* New upstream version.
* debian/control:
- Corrected VCS URLs.
- Using debhelper 8 (debian/compat
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
kalign - Global and progressive multiple sequence alignment
Changes:
kalign (1:2.03+20110620-1) unstable; urgency=low
.
* New upstream release.
Using 2.04 as a version number was a mistake of mine, it should have been
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-other-bio3d - GNU R package for biological structure analysis
Changes:
r-other-bio3d (1.1-3-1) unstable; urgency=low
.
* New upstream release.
* Incremented Standards-Version to reflect compliance with Policy 3.9.2
-By: Charles Plessy ple...@debian.org
Description:
igv- Integrative Genomics Viewer
Changes:
igv (1.5.64-1) unstable; urgency=low
.
* Team upload.
* New upstream release.
* debian/control:
- Depend and Build-Depend on libjhdf5-java.
- Incremented Standards-Version
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
treeviewx - Displays and prints phylogenetic trees
Changes:
treeviewx (0.5.1+20100823-1) unstable; urgency=low
.
* New upstream version, hosted on Google Code.
* Deleted debian/patches 45_gcc4.3.diff, 50_wxT_tv.cpp.diff
-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
t-coffee - Multiple Sequence Alignment
t-coffee-doc - PDF and HTML accompaning documents to T-Coffee
t-coffee-examples - annotated examples for the use of T-Coffee
Changes:
t-coffee (8.99-1) unstable
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
bioperl-run - BioPerl wrappers: scripts
libbio-perl-run-perl - BioPerl wrappers: modules
Changes:
bioperl-run (1.6.9-1) unstable; urgency=low
.
* New upstream release.
* Converted and validated debian
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
bioperl- Perl tools for computational molecular biology
libbio-perl-perl - BioPerl core perl modules
Changes:
bioperl (1.6.901-1) unstable; urgency=low
.
* New upstream release.
* Point debian/watch
Changed-By: Charles Plessy ple...@debian.org
Description:
seaview- Multiplatform interface for sequence alignment and phylogeny
Changes:
seaview (1:4.2.12-1) unstable; urgency=low
.
* New upstream versions.
* Using Debhelper compatibility level 8 (debian/control, debian/compat
Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: filo
Version : 1.1.0
Upstream Author : Aaron Quinlan, University of Virginia; Assaf Gordon, Cold
Spring Harbor Laboratories
URL : https://github.com/arq5x/filo
License
Le Wed, Jun 08, 2011 at 10:54:53PM +, The Fungi a écrit :
On Wed, Jun 08, 2011 at 05:53:06PM +0600, Andrey Rahmatullin wrote:
On Wed, Jun 08, 2011 at 08:02:34PM +0900, Charles Plessy wrote:
shuffle will randomize the order of lines in a file. In other
words, if you have a sorted file
Changed-By: Charles Plessy ple...@debian.org
Description:
bedtools - suite of utilities for comparing genomic features
Closes: 629597
Changes:
bedtools (2.12.0-1) unstable; urgency=low
.
* Initial release (Closes: #629597)
Checksums-Sha1:
3fae9bb7385c3956a0ef2e6f10e0f61d58f460d9 1924
Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: bedtools
Version : 2.12.0
Upstream Author : Aaron Quinlan
URL : http://code.google.com/p/bedtools/
License : GPL-2+
Programming Lang: C++
Description : suite
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-vcd - GNU R Visualizing Categorical Data
Closes: 629319
Changes:
r-cran-vcd (1:1.2-11-1) unstable; urgency=low
.
* Team upload.
* New upstream release.
* Build-depend on r-cran-mass (debian/control, Closes: #629319
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libsam-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
picard-tools (1.46-1) unstable; urgency=low
.
* New upstream release.
* Depend
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Closes: 628882
Changes:
r-bioc-edger (2.2.5-1) unstable; urgency=low
.
* Initial release (Closes: #628882)
Checksums-Sha1
and committing the changes is more efficient as a whole.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-bioc-limma - linear models for microarray data
Closes: 628548
Changes:
r-bioc-limma (3.8.2-1) unstable; urgency=low
.
* Initial release (closes: #628548).
Checksums-Sha1:
1c36f60237b39f9e493282344bb600106c8ce4aa 1931 r-bioc
Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: r-bioc-edger
Version : 2.2.5
Upstream Author : Mark Robinson mrobin...@wehi.edu.au, Davis McCarthy
dmccar...@wehi.edu.au, Gordon Smyth sm...@wehi.edu.au
URL :
http
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-catools - GNU R package providing various utility functions
Changes:
catools (1.12-1) unstable; urgency=low
.
* New upstream version.
* Added myself as Uploader (debian/control).
* Incremented Standards-Version
Hello everybody,
in echo to Raphaël's question about the use of a VCS together with the 3.0
(quilt) format, I was just wondering, what is needed to have 3.0 (git)
acceptable in Debian, and how can we solve this ?
Have a nice day,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: r-bioc-limma
Version : 3.8.2
Upstream Author : Gordon Smyth sm...@wehi.edu.au
URL : http://bioinf.wehi.edu.au/limma/
License : GPL, LGPL
Programming Lang: R, C
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-sp - GNU R classes and methods for spatial data
Closes: 628354
Changes:
r-cran-sp (1:0.9-81-1) unstable; urgency=low
.
* Team upload.
* New upstream release. Closes: #628354 (caused by a typo in the source).
* Using
.
Have a nice day,
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Tsurumi, Kanagawa, Japan
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debian-med-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
sra-toolkit - utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev - Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 - Libraries for the SRA Toolkit
Closes
,
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,
in the meantime or in addition, the BTS could be used to track the requests for
upload and the package reviews. Here is a simple proposal that combines this
plus a an approach based on mutual reviews.
http://wiki.debian.org/PackageReview
Have a nice week-end,
--
Charles Plessy
Tsurumi, Kanagawa
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files
Changes:
libbio-samtools-perl (1.28-2) unstable; urgency=low
.
* libbam-dev’s bam.h file moved to ‘/usr/include/samtools’.
- Build
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Closes: 625622 626044
Changes:
samtools (0.1.16-1) unstable; urgency=low
build will still be successful after the GCC
patch is reverted.
Is there an easy way we can suggest to our upstreams to re-enable the errors ?
That may be useful for them to update their code.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Changed-By: Charles Plessy ple...@debian.org
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (171-1) unstable; urgency=low
.
* New upstream release accepting gcc-4.6.patch (LP: #770770).
- Deleted debian/patches and its contents
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-bioc-biobase - base functions for Bioconductor
Closes: 169859
Changes:
r-bioc-biobase (2.12.1-1) unstable; urgency=low
.
* Initial release (Closes: #169859)
Checksums-Sha1:
5330850bb80a97c1abad70c082e6292d7f92ab51 1944
dpkg!
E: Sub-process /usr/bin/dpkg returned an error code (100)
E: Failed to execute /bin/rm: No such file or directory
E: apt-get dist-upgrade failed
The schroot is now broken. I have not tested to upgrade on my system to see if
it would do the same ;)
Cheers,
--
Charles Plessy
Tsurumi
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
embassy-phylip - EMBOSS conversions of the programs in the phylip package
Changes:
embassy-phylip (3.69+20100721-3) unstable; urgency=low
.
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore
-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
embassy-domainatrix - Extra EMBOSS commands to handle domain classification
file
Closes: 625162
Changes:
embassy-domainatrix (0.1.0+20100721-3) unstable; urgency=low
.
* Set RPATH with “-Wl,--rpath
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
embassy-domsearch - Extra EMBOSS commands to search for protein domains
Closes: 625193
Changes:
embassy-domsearch (0.1.0++20100721-3) unstable; urgency=low
.
* Corrected version mangling in debian/watch
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
embassy-domalign - Extra EMBOSS commands for protein domain alignment
Closes: 625189
Changes:
embassy-domalign (0.1.0+20100721-3) unstable; urgency=low
.
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does
-By: Charles Plessy ple...@debian.org
Description:
tabix - generic indexer for TAB-delimited genome position files
Changes:
tabix (0.2.5-1) unstable; urgency=low
.
* New upstream release.
* Added debian/README.test to explain how to test tabix and bgzip.
Checksums-Sha1
Le Sun, May 08, 2011 at 10:07:53AM +0200, Stefano Zacchiroli a écrit :
I would be happy if we could stop discussing what today is just spilled milk,
given that one way or another this matter has been settled.
To clarify, Enrico wrote that “the hands of FD were rather tied” by the 2008
GR, and
:
- urgency=emergency: no communication needed.
- urgency=high: normal upload if no activity for 7 days.
- urgency=medium: DELAYED/2 if no activity for 7 days.
- urgency=low: ask first.
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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to be
anti-consensual is to divide developers into formal categories. I have not
seen such a vigourous opposition in the recent years to the idea of accepting
non-packaging developers in Debian.
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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day,
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Charles Plessy
Illkirch-Graffenstaden, Alsace, France
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Archive: http://lists.debian.org/20110503093212.gb12...@merveille.plessy.net
Le Tue, May 03, 2011 at 05:21:06PM +0200, Matthias Klose a écrit :
GCC usually has a twelve months release cycle, so you'll see the
next set of missing include headers in spring 2012, and in Debian,
if unstable isn't frozen by this time.
Thanks for the information.
I just got a bug from you
),
- a temporisation mechanism so that changes are not executed immediately,
- stored in a VCS so that it is easy to revert changes.
Have a nice day,
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Tsurumi, Kanagawa, Japan
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content
negociation, that is, give the language that the user wishes.
Have a nice day,
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Tsurumi, Kanagawa, Japan
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Archive: http
-packag...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
gbrowse- The GMOD Generic Genome Browser
gbrowse-calign - CAlign helper
gbrowse-data - Sample data to use GBrowse
Closes: 429610
Changes:
gbrowse (2.26~dfsg-1) experimental; urgency=low
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
Closes: 622700
Changes:
fastx-toolkit (0.0.13-1) unstable; urgency=low
.
* Initial release (Closes: #622700)
Checksums-Sha1
to go ahead and
update the package, you are most welcome ! I can add you to the pkg-eucalyptus
group any time.
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy ple...@debian.org
Package name: fastx-toolkit
Version : 0.0.13
Upstream Author : Assaf Gordon gor...@cshl.edu
URL : http://hannonlab.cshl.edu/fastx_toolkit/
License : AGPL-3+, MIT
Programming Lang
-By: Charles Plessy ple...@debian.org
Description:
tabix - generic indexer for TAB-delimited genome position files
Changes:
tabix (0.2.4-1) unstable; urgency=low
.
* New upstream release.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Changes:
samtools (0.1.15-1) unstable; urgency=low
.
* New upstream release
le
biais d'un rapport de bug de sévérité « whishlist » signalant la disponibilité
d'une nouvelle version amont.
Amicalement,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Changed-By: Charles Plessy ple...@debian.org
Description:
libgtextutils-dev - Gordon Text_utils library (development files)
libgtextutils0 - Gordon Text_utils library
Closes: 613486
Changes:
libgtextutils (0.6-1) unstable; urgency=low
.
* Initial release (Closes
Le Thu, Apr 07, 2011 at 03:08:33PM +0200, Bernd Zeimetz a écrit :
On 04/07/2011 10:11 AM, Charles Plessy wrote:
http://wiki.debian.org/UpstreamMetadata
The key concept is to store ‘Field: value’ data in a file called
debian/upstream-metadata.yaml, and to access it from the VCS where
also support deprecating the non-use of VCS for managing
source packages).
The biggest difficulty would be to agree on field names. The best would be to
be compatible with some pre-existing RDF ontologies, like DOAP.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files
Changes:
libbio-samtools-perl (1.28-1) unstable; urgency=low
.
* New upstream release.
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
r-cran-genabel - GNU R package for genome-wide SNP association analysis
Closes: 620269
Changes:
r-cran-genabel (1.6-5-1) unstable; urgency=low
.
* New upstream release, buildable with R 2.12 (closes: #620269
failures to build, while not a goal by
themselves, are an inevitable byproduct of increasing our workforce. Automated
reporting of build failures can circumvent the nuisance to the package
maintainers themselves.
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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...@lists.alioth.debian.org
Changed-By: Charles Plessy ple...@debian.org
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Changes:
samtools (0.1.14-1) unstable; urgency=low
.
* New upstream release
.
J'espère faire des choses utiles !
Je ne vois aucun problème ou oubli. Merci beaucoup pour le rapport !
Amicalement,
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Charles Plessy
Tsurumi, Kanagawa, Japon
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Changed-By: Charles Plessy ple...@debian.org
Description:
libbio-graphics-perl - Generate GD images of Bio::Seq objects
Changes:
libbio-graphics-perl (2.14-1) unstable; urgency=low
.
* New upstream release.
* Converted debian/copyright to DEP-5 machine-readable format
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