Bug#609038: ITP: biomaj -- a biological databank update and processing tool

2011-01-05 Thread Olivier Sallou
Package: biomaj Version: 1.1.0 Severity: wishlist I want to package the Biomaj tool (http://biomaj.genouest.org) for Debian. The tool is already on production on several servers worldwide. -- System Information: Debian Release: squeeze/sid APT prefers lucid-updates APT policy: (500,

problem with web site http://packages.debian.org/

2011-07-12 Thread olivier sallou
Hi, there is an issue with one of my packages with the displayed description. http://packages.debian.org/sid/biomaj It displays: Binary utilities supporting TI's MSP430 targetsPackage: biomaj (1.1.0-3) The programs in this package are used to manipulate binary and object files that

Re: Providing official virtualisation images of Debian

2011-07-30 Thread olivier sallou
Debian live provide has the possibility to generate raw images with custom configuration. Only problem here is it is to generate livecd instead of a ready to run image. Adding this possiblity would provide VM for Debian but also Debian users to create their own Debian customized VM. Raw format can

Re: Providing official virtualisation images of Debian

2011-07-31 Thread olivier sallou
Let's not just forget that Amazon EC2 AMI is a nice thing to provide, but interface to get ssh-keys etc... (just look at ip used to get meta data) is propriatory and will not work with other cloud softwares (public or private, such as open nebula/open stack). Only EC2 interface is shared to manage

Fwd: Re: BLAST+ speed build issues

2011-08-04 Thread Olivier Sallou
:Thu, 4 Aug 2011 09:31:54 + (UTC) De (renvoi) : debian-...@lists.debian.org Date : Thu, 04 Aug 2011 11:31:34 +0200 De :Olivier Sallou olivier.sal...@irisa.fr Pour : Tim Booth ava...@fastmail.fm Copie à : debian-...@lists.debian.org, Aaron M. Ucko a...@alum.mit.edu Hi, I

Re: Fwd: Re: BLAST+ speed build issues

2011-08-04 Thread olivier sallou
Linking against needed lib is quite difficult (would need to be done on upstream), package is rather complex regarding compilation. And each solution has its pros and cons I think we will have to discuss on validity to provide static builds ( takes a lot of space on package vs perf loss)

Bug#637109: ITP: pycaptcha -- collection of Python modules implementing CAPTCHAs

2011-08-08 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: pycaptcha Version : 2.4 Upstream Author : Micah Dowty micah at navi cx * URL : http://pypi.python.org/pypi/PyCAPTCHA/0.4 * License : MIT Programming Lang: Python

Bug#637230: ITP: mobyle -- Mobyle is a wbe portal and framework to provide web interfaces to command-line tools. It is designed though not limited for bioinfomatics.

2011-08-09 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: mobyle Version : 1.0.0 Upstream Author : Herve Menager herve.mena...@pasteur.fr * URL : https://projets.pasteur.fr/wiki/mobyle/download * License : GPL Programming

how to debug test build issues form Debian servers

2011-08-25 Thread olivier sallou
Hi, I have a package that fails some tests on a few architectures. Looking at logs from those servers, it seems that it is quite random (not always same arch, or same tests), could be due to some timeouts in tests etc... I am not upstream author, impacted tests are not easy to debug. And log show

Bug#639868: ITP: chado -- Chado is a relational database schema that underlies many GMOD installations.

2011-08-31 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: chado Version : 1.11 Upstream Author : GMOD * URL : http://gmod.org/wiki/Chado_-_Getting_Started * License : Artistic License 2.0 Programming Lang: Perl,SQL

load of apache module for a package

2011-09-19 Thread olivier sallou
Hi, I need some apache modules for a package. Should I use a2enmod in postinst script, or, is there any debhelper/deb file way to do it? Thanks Olivier

Bug#644136: ITP: ruby-text -- collection of text match and analysis algorithms

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: ruby-text Version : 1.1.2 Upstream Author : Paul Battley, Michael Neumann, Tim Fletcher * URL : https://rubygems.org/gems/Text * License : GPL Programming Lang

Bug#644137: ITP: ruby-cassiopee -- provide methods to search exact match or approximate matches with Hamming or edit distance

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: ruby-cassiopee Version : 0.1.8 Upstream Author : Olivier Sallou olivier.sal...@irisa.fr * URL : https://rubygems.org/gems/cassiopee * License : GPL Programming

Build error form Ubuntu regarding xz compression

2011-10-19 Thread olivier sallou
Hi, I received an email error from Ubuntu regarding build of a package (extracted from debian): Rejected: Require Pre-Depends: dpkg (= 1.15.6) when using xz compression. Require Pre-Depends: dpkg (= 1.15.6) when using xz compression. Package indeed uses xz compression, but do you know what I

Re: Build error form Ubuntu regarding xz compression

2011-10-19 Thread olivier sallou
Thanks for clarification 2011/10/19 Colin Watson cjwat...@ubuntu.com On Wed, Oct 19, 2011 at 02:09:47PM +0200, olivier sallou wrote: I received an email error from Ubuntu regarding build of a package (extracted from debian): I'm sorry you received this error; this is a Launchpad bug

Bug#647416: ITP: libbio-chado-schema-perl -- object-relational mapping layer for use with the GMOD Chado database schema

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libbio-chado-schema-perl Version : 0.09010 Upstream Author : Robert Bruels rbu...@cpan.org * URL : http://search.cpan.org/~rbuels/Bio-Chado-Schema/lib/Bio/Chado/Schema.pm

Bug#647417: ITP: libdbix-class-tree-nestedset-perl -- Manage trees of data using the nested set model

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libdbix-class-tree-nestedset-perl Version : 0.10 Upstream Author : Ian Docherty pa...@iandocherty.com * URL : http://search.cpan.org/~icydee/DBIx-Class-Tree-NestedSet-0.10

Re: Want to become a DM and co-maintainer

2011-11-15 Thread olivier sallou
2011/11/12 Svante Signell svante.sign...@telia.com Hi, Where/how to apply to become a co-maintainer and a maintainer? The packages I'm interested into start with are: gnuradio and octave. Additionally, I have not found any package for USRP yet. At first, you will have to maintain package

Bug#652031: ITP: clustalo -- Clustal Omega is the latest addition to the Clustal family

2011-12-14 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: clustalo Version : 1.0.3 Upstream Author : clust...@ucd.ie * URL : http://www.clustal.org/omega/ * License : GPL Programming Lang: C Description : Clustal

Bug#654603: ITP: gassst -- Global Alignment Short Sequence Search Tool

2012-01-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: gassst Version : 1.28 Upstream Author : Dominique Lavanier dominique.lavan...@irisa.fr * URL : http://www.irisa.fr/symbiose/projects/gassst/ * License : CeCILL v2

Bug#657184: ITP: j2f -- Java Application Programming Interfaces (APIs) to numerical libraries originally written in Fortran

2012-01-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: j2f Version : 0.8.1 Upstream Author : Keith Seymour (seym...@cs.utk.edu) * URL : http://sourceforge.net/projects/f2j/ * License : GPL Programming Lang: C

nm.debian.org web site not responding

2012-02-22 Thread olivier sallou
Hi, the web site https://nm.debian.org/nmlist.php has a forbidden access error for a few days. Do you know who we should contact ? Thanks Olivier -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

A few questions from a new DD

2012-02-29 Thread olivier sallou
Hi, I got my DD status a few days ago. I have 2 questions: 1) How can I send email using my @debian.org as origin ? 2) I cannot login to debian servers (tried people.debian.org), I have a permission denied. My SSH key is not yet set, so I cannot login using it. I expected to be prompted for

Re: A few questions from a new DD

2012-02-29 Thread olivier sallou
2012/2/29 Jonathan Wiltshire j...@debian.org On 2012-02-29 09:26, olivier sallou wrote: Hi, I got my DD status a few days ago. I have 2 questions: 1) How can I send email using my @debian.org [1] as origin ? Just set your From header accordingly. 2) I cannot login to debian servers

Re: A few questions from a new DD

2012-02-29 Thread olivier sallou
2012/2/29 Andreas Tille andr...@an3as.eu Hi, On Wed, Feb 29, 2012 at 10:56:28AM +0100, Alexander Reichle-Schmehl wrote: I already logged to web interface to update my profile. I do not see however any SSH key attribute in the web interface, did I miss something?. I know that it can be

Re: Bug#662513: RM: emboss/6.3.1-6

2012-03-05 Thread Olivier Sallou
really aim at shipping an up-to-date EMBOSS in Wheezy. Cheers, -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#665341: ITP: libjlapack-java -- LAPACK numerical subroutines translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libjlapack-java Version : 0.8 Upstream Author : Keith Seymour * URL : http://icl.cs.utk.edu/f2j/ * License : BSD Programming Lang: Fortran, Java Description

Bug#665343: ITP: libnetlib-java -- collection of mission-critical software components for linear algebra system translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libnetlib-java Version : 0.9.3 Upstream Author : Sam Halliday sam.halli...@gmail.com * URL : http://code.google.com/p/netlib-java * License : BSD Programming Lang

is something wrong with cron.d ?

2012-04-12 Thread Olivier Sallou
Hi, I have added a cron task to my package via the package xxx.cron file. (I am using sid) However, it never gets executed (not exactly true, it happened to occur once...) In my syslog file I can see: Apr 12 13:04:01 VM-247 /usr/sbin/cron[2999]: (*system*xgrid) RELOAD (/etc/cron.d/xgrid) Apr

Re: is something wrong with cron.d ?

2012-04-12 Thread Olivier Sallou
STUPID ME!!! I have spent hours looking for bugs, issues, looking at files not seeing the syntax error 0/5... Sorry for the noise... Olivier Le 4/12/12 1:52 PM, Olivier Sallou a écrit : Hi, I have added a cron task to my package via the package xxx.cron file. (I am using sid) However

debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-17 Thread olivier sallou
Hi, I cannot get debootstrap working anymore in sid since libept update. There is an open bug (#472704) for this but if someone has an idea of what is going on to help the debug A recent upload of libept delivered binary libept1.4.12 instead of libept1 (source release 1.0.6 now). But when

Re: debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-17 Thread olivier sallou
2012/4/17 olivier sallou olivier.sal...@gmail.com Hi, I cannot get debootstrap working anymore in sid since libept update. There is an open bug (#472704) for this but if someone has an idea of what is going on to help the debug A recent upload of libept delivered binary libept1.4.12

Re: debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-18 Thread olivier sallou
2012/4/18 Mike Gabriel mike.gabr...@das-netzwerkteam.de Package: libept1.4.12 Version: 1.0.6.1 Severity: Important Hi Oliver, hi Enrico, hi all, On Di 17 Apr 2012 17:29:53 CEST olivier sallou wrote: 2012/4/17 olivier sallou olivier.sal...@gmail.com Hi, I cannot get debootstrap

Bug#674265: ITP: biojava3 -- Java API to develop tools for bioinformatics research rewrote from biojava1

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: biojava3 Version : 3.0.4 Upstream Author : BioJava team * URL : http://www.biojava.org/ * License : LGPL Programming Lang: Java Description : Java API to develop

Bug#674269: ITP: libforester-java -- library for phylogenomics and evolutionary biology research

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: forester Version : 0.955 * URL : http://code.google.com/p/forester/ * License : LGPL Programming Lang: Java Description : library for phylogenomics

apache 2.4 transition bugs

2012-05-24 Thread Olivier Sallou
Hi, as Apache 2.4 transition has been delayed, should not created bugs, set with Important severity be lowered ? or closed and reopen when transition will occur? I have several packages impacted. Thanks Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83

Re: Packaging on GitHub ?

2012-05-27 Thread olivier sallou
Le 27 mai 2012 03:12, Jon Bernard jbern...@debian.org a écrit : * Charles Plessy ple...@debian.org wrote: Hello everybody, for one of the packages maintained by the pkg-eucalyptus team (euca2ools), the upstream source moved to GitHub, and we would like to try to maintain the Debian

Bug#678373: ITP: logol -- Pattern matching tool for biological sequences

2012-06-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: logol Version : 1.5.0 Upstream Author : Olivier Sallou olivier.sal...@irisa.fr * URL : http://logol.genouest.org * License : CeCILL Programming Lang: Java, Prolog

Bug#683291: ITP: soapdenovo -- short-read assembly method that can build a de novo draft assembly for the human-sized genomes

2012-07-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: soapdenovo Version : 1.0.5 Upstream Author : BGI-Shenzhen * URL : http://soap.genomics.org.cn/soapdenovo.html * License : GPL3+ Programming Lang: C Description

Re: Enabling uscan to simply remove files from upstream source

2012-08-21 Thread olivier sallou
2012/8/21 Andreas Tille andr...@an3as.eu Hi, third summary of the proposal 1. The new field Files-Excluded in debian/copyright contains a space separated list of globs (as used by find and for specifying file lists in machine readable debian/control files). The deletion

Bug#686077: ITP: libsnappy1.0.3-java -- Fast Java compressor/decompressor, port of Snappy

2012-08-28 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsnappy1.0.3-java Version : 1.0.3-rc3 Upstream Author : Xerial.org * URL : https://code.google.com/p/snappy-java/downloads/list?can=4q=colspec=Filename+Summary+Uploaded

Re: Discarding uploaded binary packages

2012-10-15 Thread olivier sallou
Le 16 oct. 2012 04:59, Michael Gilbert mgilb...@debian.org a écrit : I know this subject has been discussed on and off in the past, but there's new evidence that it's simply the right thing to do. Due to changes in upstream's build system, isc-dhcp recently started including build system

Bug#700859: ITP: mobyle-tutorials -- Tutorial descriptors for the mobyle package

2013-02-18 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: mobyle-tutorials Version : 1.5.0 Upstream Author : Mobyle team * URL : ftp://ftp.pasteur.fr/pub/GenSoft/projects/mobyle/ * License : LGPL-2+ Programming Lang: XML

Re: Generators for debian/* files?

2013-04-05 Thread olivier sallou
dh-make-perl indeed for Perl CPAN packages. dh-make for base packages... Olivier 2013/4/5 Thomas Koch tho...@koch.ro Hi, debian-java has the tool mh_make that generates debian packages from maven projects. There's some java code in there that produces debian/* files: rules, copyright,

Bug#705128: ITP: libcofoja-java -- Java framework with annotation processing to provide runtime checkings

2013-04-10 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libcofoja-java Version : 1.0~r139 Upstream Author : Google Inc * URL : https://code.google.com/p/cofoja/ * License : LGPL Programming Lang: Java Description

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Olivier Sallou
-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Olivier Sallou
-med-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438

Re: On accepting pre-generated doc from upstream

2013-06-06 Thread olivier sallou
2013/6/7 Lisandro Damián Nicanor Pérez Meyer perezme...@gmail.com Hi everyone. First of all, I'm cross-posting this between legal and devel because I really don't know to which of them belongs (or maybe it does in both). The issue is this: Qt 5 has grown so large (850+MB unpacked in the

overriding udev rules

2013-08-20 Thread olivier sallou
hi, I need for a package to override some udev standard rules. If I put an identical rule name in /etc/udev/rules.d, I know it overrides the one in /lib/udev/rules.d However, lintian raises an error if I put an udev rule in /etc instead of /lib. And if I try to put the file in /lib, it fails at

Re: overriding udev rules

2013-08-20 Thread olivier sallou
2013/8/20 Michael Biebl bi...@debian.org Am 20.08.2013 10:39, schrieb olivier sallou: hi, I need for a package to override some udev standard rules. If I put an identical rule name in /etc/udev/rules.d, I know it overrides the one in /lib/udev/rules.d However, lintian raises

Re: overriding udev rules

2013-08-20 Thread olivier sallou
2013/8/20 olivier sallou olivier.sal...@gmail.com 2013/8/20 Michael Biebl bi...@debian.org Am 20.08.2013 10:39, schrieb olivier sallou: hi, I need for a package to override some udev standard rules. If I put an identical rule name in /etc/udev/rules.d, I know it overrides the one

Fwd: Re: overriding udev rules

2013-08-20 Thread olivier sallou
Ccing the list -- Message transféré -- De : olivier sallou olivier.sal...@gmail.com Date : 20 août 2013 22:27 Objet : Re: overriding udev rules À : Thomas Goirand z...@debian.org Le 20 août 2013 22:18, Thomas Goirand z...@debian.org a écrit : On 08/20/2013 07:02 PM, olivier

Re: overriding udev rules

2013-08-21 Thread olivier sallou
2013/8/21 Peter Palfrader wea...@debian.org On Tue, 20 Aug 2013, Thomas Goirand wrote: I'd be happy to find a correct and clean way to do this, because I also need to do it, and it seems to be a fairly common use case. I currently only delete the 75-persistent-net-generator.rules file

Re: overriding udev rules

2013-08-22 Thread olivier sallou
I think I gonna simply skip the udev rules overriding, it will be up to the user to do the cleaning if he wants to do cloning etc... as done in cloud-init package, waiting for easier udev management from package side. Thanks to all for your advises. quoting previous... -- gpg key id:

issue with svn repo?

2013-11-11 Thread olivier sallou
Hi, are you experimenting issues with svn access to debian repo (svn and anonsvn) ? I can't connect anymore and when trying to browse the code, I have access errors http://anonscm.debian.org/viewvc/debian-med/trunk Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint

Bug#732990: ITP: readseq2 -- readseq2 is a rewrite of readseq converter

2013-12-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: readseq2 Version : 2.1.30 Upstream Author : D. Gilbert gilbe...@bio.indiana.edu * URL : http://iubio.bio.indiana.edu/soft/molbio/readseq/java/ * License : Public

Bug#735158: ITP: minia -- short-read assembler

2014-01-13 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: minia Version : 1.6067 Upstream Author : Rayan * URL : http://minia.genouest.org * License : CeCILL Programming Lang: C Description : short-read assembler

Re: Bug#732878: Add MariaDB as an alternative dependency

2014-01-17 Thread olivier sallou
2014/1/17 Otto Kekäläinen o...@seravo.fi 2013/12/30 Otto Kekäläinen o...@seravo.fi: We discussed this on the pkg-maint-mysql list and the recommended policy is now: All packages that at the moment depend directly on mysql-client should instead have something like: Depends:

Bug#737098: ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: discosnp Version : 1.0.1 Upstream Author : INRIA * URL : http://colibread.inria.fr/discosnp/ * License : CeCILL Programming Lang: C Description : discovering

Bug#737099: ITP: mapsembler2 -- bioinformatics targeted assembly software

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: mapsembler2 Version : 2.0.5 Upstream Author : INRIA * URL : https://colibread.inria.fr/mapsembler2/ * License : CeCILL Programming Lang: C Description

Fwd: Microsoft Azure provider available in bootstrap-vz

2014-04-08 Thread olivier sallou
-- Message transféré -- De : olivier sallou olivier.sal...@gmail.com Date : 8 avr. 2014 09:05 Objet : Microsoft Azure provider available in bootstrap-vz À : debian-cloud debian-cl...@lists.debian.org Cc : Hi, I have just finished the provider for Microsoft Azure on bootstrap-vz

[VAC] 11 - 23 July

2014-07-09 Thread olivier sallou
Hi, I won't be available/reachable during this period for package maintenance. In case of issue, the Debian Med team can manage my packages, thank you for forwarding the the debian-med mailng list. Olivier

Bug#756291: (no subject)

2014-07-28 Thread Olivier Sallou
Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program Package: wnpp Owner: Olivier Sallou olivier.sal...@irisa.fr Severity: wishlist * Package name: prodigal Version : 2.60 Upstream Author : Doug Hyatt * URL : http://prodigal.ornl.gov

Packaging of web apps: bower, yeoman...

2014-11-08 Thread olivier sallou
Hi, I'd like to know if some developper already packaged web apps using bower/yeoman. Those tools are more and more popular in web development to get web related libraries and , with Grunt, concatenate/minify/obscorate/... used libraries. The issue is, like npm, maven or other tools, they download

Re: Javascript trigger design

2014-11-27 Thread olivier sallou
Le Fri Nov 28 2014 at 01:55:26, Tomas Pospisek t...@sourcepole.ch a écrit : Am 28.11.2014 um 00:04 schrieb Thomas Goirand: Hi, Web application have evolved into monsters that needs lots of javascript. It's very common that these javascript applications are collecting all the .js

Accepted ncbi-blast+ 2.2.25-1 (source all amd64)

2011-06-08 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 624394 Changes: ncbi-blast+ (2.2.25-1) unstable; urgency=low . * Initial

Accepted gbrowse 2.38~dfsg-1 (source all amd64)

2011-06-19 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: gbrowse- The GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Changes: gbrowse (2.38~dfsg-1) unstable; urgency=low . * New upstream

Accepted biomaj 1.1.0-2 (source all)

2011-04-28 Thread Olivier Sallou
-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - Biological banks updater Closes: 623558 623807 624284 Changes: biomaj (1.1.0-2) unstable; urgency=low . * Add russian translation of debconf: Thanks to Yuri Kozlov yu...@komyakino.ru Closes: #623807 * debian

Accepted squizz 0.99a-1 (source amd64)

2011-04-14 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libsquizz - Conversion libs used by squizz libsquizz-dev - Libraries and includes for development squizz - Sequence/alignment converter Closes: 618689 Changes: squizz (0.99a-1) unstable; urgency=low

Accepted biomaj 1.1.0-1 (source all)

2011-04-17 Thread Olivier Sallou
-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - Biological banks updater Closes: 609038 Changes: biomaj (1.1.0-1) unstable; urgency=low . * Initial release (Closes: #609038) First Debian package, fixed copyright file to list all licenses Checksums-Sha1

Accepted biomaj 1.1.0-3 (source all)

2011-07-11 Thread Olivier Sallou
-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - Biological banks updater Closes: 628927 629455 632952 633523 Changes: biomaj (1.1.0-3) unstable; urgency=low . * Change priority in debconf message for jdk home * Add spanish translation of debconf: Thanks

Accepted libmath-vecstat-perl 0.08-1 (source all)

2011-07-11 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libmath-vecstat-perl - module providing some basic numeric stats on vectors Closes: 632086 Changes: libmath-vecstat-perl (0.08-1) unstable; urgency=low . * First import to Debian (Closes: #632086 ). Checksums-Sha1

Accepted fonts-cmu 0.7.0-2 (source all)

2011-08-16 Thread Olivier Sallou
-By: Olivier Sallou olivier.sal...@irisa.fr Description: fonts-cmu - sets the computer modern unicode fonts Changes: fonts-cmu (0.7.0-2) unstable; urgency=low . * Add more detailled copyright info Checksums-Sha1: c1feda56472b2987dda75f253a364da82c1272f2 1917 fonts-cmu_0.7.0-2.dsc

Accepted gbrowse 2.39~dfsg-2 (source all amd64)

2011-08-29 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: gbrowse- The GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Changes: gbrowse (2.39~dfsg-2) unstable; urgency=low . * Skip deferred

Accepted gbrowse 2.39~dfsg-1 (source all amd64)

2011-08-08 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: gbrowse- The GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Changes: gbrowse (2.39~dfsg-1) unstable; urgency=low . * New upstream

Accepted biomaj-watcher 1.0-1 (source all)

2011-08-12 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj-watcher - BioMAJ web interface Closes: 609038 Changes: biomaj-watcher (1.0-1) unstable; urgency=low . * Initial release (Closes: #609038). Checksums-Sha1: e2f8c42577a054cae16c62443aa1c3df4f760b70 1634 biomaj

Accepted fonts-cmu 0.7.0-1 (source all)

2011-08-12 Thread Olivier Sallou
-By: Olivier Sallou olivier.sal...@irisa.fr Description: fonts-cmu - sets the computer modern unicode fonts Closes: 620537 Changes: fonts-cmu (0.7.0-1) unstable; urgency=low . * Initial release (Closes: #620537) Checksums-Sha1: 6ed53059f6f46c52c4c317e4c0ab694ddf522bf6 1894 fonts-cmu_0.7.0-1

Accepted circos 0.55-1 (source all)

2011-08-15 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: circos - Package for visualizing data and information otf-symbols-circos - Fonts used by default in Circos Closes: 632174 Changes: circos (0.55-1) unstable; urgency=low . * First debian import (Closes: #632174

Accepted circos-tools 0.16-1 (source all)

2011-08-15 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: circos-tools - Helper tools for Circos Closes: 632174 Changes: circos-tools (0.16-1) unstable; urgency=low . * First debian import (Closes: #632174) Checksums-Sha1: 947223ce96f15dfcf7ee8503c1861a5962621b38 1950 circos

Accepted biomaj 1.2.0-1 (source all)

2011-09-14 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - Biological banks updater biomaj-properties - bank properties file examples Changes: biomaj (1.2.0-1) unstable; urgency=low . * New upstream release with new features and bug fixes. * Change in database

Accepted biomaj-watcher 1.2.0-1 (source all)

2011-09-15 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj-watcher - BioMAJ web interface Closes: 640057 640096 Changes: biomaj-watcher (1.2.0-1) unstable; urgency=low . * New upstream release with new features (multi tenant, private banks...) * Spanish translation

Accepted biomaj-watcher 1.2.0-2 (source all)

2011-09-22 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj-watcher - BioMAJ web interface Changes: biomaj-watcher (1.2.0-2) unstable; urgency=low . * Fix patch, login and jobs location not taken into account in context xml. Checksums-Sha1

Accepted pycaptcha 0.4-1 (source all)

2011-09-23 Thread Olivier Sallou
Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: python-captcha - collection of Python modules implementing CAPTCHAs Closes: 637109 Changes: pycaptcha (0.4-1) unstable; urgency=low . * Initial release (Closes: #637109) * Upload is sponsored by Yaroslav Halchenko Checksums

Accepted libdbix-dbstag-perl 0.12-1 (source all)

2011-10-16 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libdbix-dbstag-perl - module providing relational database to hierarchical mapping Closes: 644272 Changes: libdbix-dbstag-perl (0.12-1) unstable; urgency=low . * Initial Release (Closes: #644272). Checksums-Sha1

Accepted gbrowse 2.42~dfsg-1 (source all amd64)

2011-10-19 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Changes: gbrowse (2.42~dfsg-1) unstable; urgency=low . * New upstream release

Accepted circos 0.55-2 (source all)

2011-10-19 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: circos - Package for visualizing data and information otf-symbols-circos - Fonts used by default in Circos Changes: circos (0.55-2) unstable; urgency=low . * Add pre-depends on dpkg to support xz compression

Accepted circos-tools 0.16-2 (source all)

2011-10-19 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: circos-tools - Helper tools for Circos Changes: circos-tools (0.16-2) unstable; urgency=low . * Add pre-depends on dpkg for xz compression (required for Ubuntu) Checksums-Sha1: 466b46c8e6584d5a4505bc22b8816595e8cc58b8 2000

Accepted ruby-text 0.2.0-1 (source all)

2011-10-27 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: ruby-text - Collection of text algorithms for Ruby Closes: 644136 Changes: ruby-text (0.2.0-1) unstable; urgency=low . * Initial release (Closes: #644136) Checksums-Sha1: a51c428d0e03f661e3d7ec916eea289bbdd74b8a

Accepted ruby-cassiopee 0.1.9-1 (source all)

2011-11-01 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: ruby-cassiopee - Library to index strings and to search with exact or approximate Closes: 644137 Changes: ruby-cassiopee (0.1.9-1) unstable; urgency=low . * Initial release (Closes: #644137) Checksums-Sha1

Accepted mobyle 1.0.3~dfsg-1 (source all amd64)

2011-11-02 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.0.3~dfsg-1) unstable; urgency=low . * New upstream release (bug fixes

Accepted libdbix-class-tree-nestedset-perl 0.10-1 (source all)

2011-11-03 Thread Olivier Sallou
-maintain...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libdbix-class-tree-nestedset-perl - module to manage trees of data using the nested set model Closes: 647417 Changes: libdbix-class-tree-nestedset-perl (0.10-1) unstable; urgency=low

Accepted libbio-chado-schema-perl 0.09040-1 (source all)

2011-11-09 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libbio-chado-schema-perl - DBIx::Class layer for the Chado database schema Closes: 647416 Changes: libbio-chado-schema-perl (0.09040-1) unstable; urgency=low . * Initial Release (Closes: #647416). Checksums

Accepted biomaj 1.2.0-2 (source all)

2011-11-11 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - Biological banks updater biomaj-properties - bank properties file examples Changes: biomaj (1.2.0-2) unstable; urgency=low . * Fix Mysql dependency name. Checksums-Sha1

Accepted libbio-chado-schema-perl 0.10010-1 (source all)

2011-11-16 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: libbio-chado-schema-perl - DBIx::Class layer for the Chado database schema Changes: libbio-chado-schema-perl (0.10010-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted ncbi-blast+ 2.2.25-6 (source all amd64)

2011-10-03 Thread Olivier Sallou
-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 642986 Changes: ncbi-blast+ (2.2.25-6) unstable; urgency=low . * debian

Accepted mobyle-programs 2.1-1 (source all)

2011-10-03 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: mobyle-programs - Program descriptions for the mobyle portal Changes: mobyle-programs (2.1-1) unstable; urgency=low . * Initial release. Checksums-Sha1: a5ea10c77e1fa70e7c8fa8533b5f8a6038e47970 2065 mobyle

Accepted mobyle 1.0.2~dfsg-1 (source all amd64)

2011-10-03 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Closes: 637230 Changes: mobyle (1.0.2~dfsg-1) unstable; urgency=low . * Initial release

Accepted mobyle 1.0.2~dfsg-2 (source all amd64)

2011-10-05 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Closes: 644277 Changes: mobyle (1.0.2~dfsg-2) unstable; urgency=low . * debian/rules

Accepted libchado-perl 1.22-1 (source all)

2012-01-31 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Closes: 639868 Changes: libchado-perl (1.22-1) unstable; urgency=low . * Initial Release (Closes

Accepted biomaj 1.2.0-4 (source all)

2012-02-01 Thread Olivier Sallou
...@lists.alioth.debian.org Changed-By: Olivier Sallou olivier.sal...@irisa.fr Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 653408 656066 656111 656254 656670 657009 657024 657341 657463 657491 657512 657548 657664

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