Bug#701571: ITP: aragorn -- detect tRNA genes in nucleotide sequences

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: aragorn Version : 1.2.36 Upstream Author : Dean Laslett gaiaqu...@gmail.com, Bjorn Canback bcanb...@acgt.se * URL : http://mbio-serv2.mbioekol.lu.se/ARAGORN/ * License

Bug#719595: ITP: mussort -- simple tool that sorts a music collection

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: mussort Version : 0.3 Upstream Author : Eskild Hustvedt esk...@zerodogg.org * URL : http://random.zerodogg.org/mussort * License : GPL Programming Lang: Perl

Bug#769162: ITP: aegean -- integrated genome analysis toolkit

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: aegean Version : 0.10.2 Upstream Author : Daniel Standage daniel.stand...@gmail.com * URL : http://standage.github.io/AEGeAn/ * License : ISC Programming Lang: C

Bug#769641: ITP: barrnap -- rapid ribosomal RNA prediction

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sas...@steinbiss.name * Package name: barrnap Version : 0.5 Upstream Author : Torsten Seemann torsten.seem...@monash.edu * URL : http://www.vicbioinformatics.com/software.barrnap.shtml * License : GPL

Accepted genometools 1.5.0-1 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome

Accepted genometools 1.5.0-2 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted genometools 1.4.1-1 (source all amd64)

Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome analysis toolkit

Accepted ltrsift 1.0.1-1 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift

Accepted genometools 1.4.2-1 (source amd64 all)

Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome analysis toolkit

Accepted genometools 1.4.2-2 (source amd64 all)

Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome analysis toolkit

Accepted genometools 1.4.2-3 (source amd64 all)

Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome analysis toolkit

Accepted genometools 1.4.2-4 (source amd64 all)

Urgency: low Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg - versatile genome analysis toolkit

Accepted genometools 1.5.1-1 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted ltrsift 1.0.2-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift

Accepted aragorn 1.2.36-1 (source amd64)

Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: aragorn- tRNA and tmRNA detection in nucleotide sequences Closes: 701571 Changes: aragorn (1.2.36-1) unstable; urgency=low . * Initial release (Closes: #701571) Checksums-Sha1: 0367656a7fac07edd37ae31ae038fb705e3f8d4a

Accepted mussort 0.3-2 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 05 Nov 2013 10:57:03 +0100 Source: mussort Binary: mussort Architecture: source all Version: 0.3-2 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de Changed-By: Sascha Steinbiss sa

Accepted aragorn 1.2.36-2 (source amd64)

Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: aragorn- tRNA and tmRNA detection in nucleotide sequences Changes: aragorn (1.2.36-2) unstable; urgency=low . * Adjust weekday in changelog (fixes lintian warning) * Fix spelling error in manpage Checksums-Sha1

Accepted mussort 0.3-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Tue, 13 Aug 2013 13:12:42 +0200 Source: mussort Binary: mussort Architecture: source all Version: 0.3-1 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de Changed-By: Sascha Steinbiss sa

Accepted genometools 1.5.1-3 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted mussort 0.3-3 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 14 May 2014 14:07:41 +0100 Source: mussort Binary: mussort Architecture: source all Version: 0.3-3 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de Changed-By: Sascha Steinbiss sa

Accepted genometools 1.5.2-1 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted genometools 1.5.2-2 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools

Accepted genometools 1.5.2-3 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted genometools 1.5.2-4 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Accepted aragorn 1.2.36-3 (source amd64)

Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: aragorn- tRNA and tmRNA detection in nucleotide sequences Changes: aragorn (1.2.36-3) unstable; urgency=low . * hardening-includes = use dpkg-buildflags instead * debian/control: Update vcs field * debian/control: Update

Accepted genometools 1.5.3-1 (source amd64 all)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools

Accepted mussort 0.3-4 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 16 Jul 2014 22:09:32 +0100 Source: mussort Binary: mussort Architecture: source all Version: 0.3-4 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de Changed-By: Sascha Steinbiss sa

Accepted aragorn 1.2.36-4 (source amd64)

Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: aragorn- tRNA and tmRNA detection in nucleotide sequences Changes: aragorn (1.2.36-4) unstable; urgency=low . * Fix hardening flags * Add patch description Checksums-Sha1: 859b5c8b3e8dfa0ea982b7ff960adb9d2ff6567a 1950

Accepted genometools 1.5.3-2 (source amd64 all) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools

Accepted ltrsift 1.0.2-2 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift Changes

Accepted ltrsift 1.0.2-3 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift Changes

Accepted mussort 0.3-5 (source all) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 18 Nov 2014 19:47:07 + Source: mussort Binary: mussort Architecture: source all Version: 0.3-5 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de Changed-By: Sascha Steinbiss sa

Accepted genometools 1.5.4-1 (source amd64 all) into experimental

Distribution: experimental Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools

Bug#776710: ITP: barrnap-data-nonfree -- non-free pHMMs for barrnap

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: barrnap-data-nonfree Version : 0.5 Upstream Author : Torsten Seemann torsten.seem...@monash.edu URL : http://www.vicbioinformatics.com/software.barrnap.shtml * License

Accepted genometools 1.5.5-1 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg

Accepted genometools 1.5.5-2 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg

Accepted genometools 1.5.6-1 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-dbg

Bug#796265: ITP: tor-monitor -- GTK+ application to display Tor circuits and streams

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: tor-monitor Version : 0.1 Upstream Author : Tails developers ta...@boum.org * URL : http://git.tails.boum.org/alan/tor-monitor/ * License : GPL Programming Lang

Accepted barrnap 0.7+dfsg-1 (source all) into unstable

Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: barrnap- rapid ribosomal RNA prediction Changes: barrnap (0.7+dfsg-1) unstable; urgency=low . * New upstream release. * Remove Suggests: to non-existent barrnap=data-nonfree package Checksums-Sha1

Bug#793907: ITP: tantan -- low complexity and tandem repeat masker for biosequences

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss sa...@tetrinetsucht.de * Package name: tantan Version : 13 Upstream Author : Martin Frith tan...@cbrc.jp * URL : http://www.cbrc.jp/tantan/ * License : GPL Programming Lang: C Description : low

Accepted aegean 0.13.0+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Changes: aegean (0.13.0+dfsg-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted tantan 13-1 (source amd64) into unstable, unstable

-By: Sascha Steinbiss sas...@steinbiss.name Description: tantan - low complexity and tandem repeat masker for biosequences Closes: 793907 Changes: tantan (13-1) unstable; urgency=low . * Initial release (Closes: #793907) * Add missing copyright holder in d/copyright * Fix machine

Accepted barrnap 0.5+dfsg-1 (source all) into unstable, unstable

Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: barrnap- rapid ribosomal RNA prediction Closes: 769641 Changes: barrnap (0.5+dfsg-1) unstable; urgency=low . * Initial release (Closes: #769641) Checksums-Sha1: 76fee414d320bf84bcfc579a4e9549acd6c9e56a 2012 barrnap_0.5+dfsg-1

Accepted aegean 0.10.2+dfsg-1 (source amd64) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Sascha Steinbiss sas...@steinbiss.name Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Closes: 769162 Changes: aegean (0.10.2+dfsg-1) unstable; urgency=low . * Initial release (Closes

Accepted genometools 1.5.7-3 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted fastaq 3.10.1-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.10.1-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: 1ee3293a5df009b795c51530aed4941f5da8 2039 fastaq_

Accepted fastaq 3.10.0-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.10.0-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: 26f95bfab5f8fb622da79bed56e16fa387c6626c 2039 fastaq_

Accepted fastaq 3.9.0-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.9.0-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: 488f69a3e79076b381270b30dde532a94794df27 2047 fastaq

Accepted ltrsift 1.0.2-4 (source amd64 all) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data

Accepted aegean 0.14.1+dfsg-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Changes: aegean (0.14.1+dfsg-1) unstable; urgency=low . * New upstream release. Ch

Accepted genometools 1.5.7-2 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted kmc 2.2+dfsg-1 (source amd64) into unstable

-By: Sascha Steinbiss sas...@steinbiss.name Description: kmc- count kmers in genomic sequences Changes: kmc (2.2+dfsg-1) unstable; urgency=low . * New upstream release * d/watch: Adjusted to use actual upstream's github repo * Rework patches to fit new upstream build system

Accepted mussort 0.3-6 (source all) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 31 Aug 2015 20:39:41 + Source: mussort Binary: mussort Architecture: source all Version: 0.3-6 Distribution: unstable Urgency: low Maintainer: Sascha Steinbiss <sa...@tetrinetsucht.de> Changed-By: Sascha Steinbi

Accepted genometools 1.5.7-1 (source all amd64) into unstable

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted fastaq 3.8.0-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.8.0-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: b54286a4fdefce61137373443e53fe55759671bd 2047 fastaq

Accepted fastaq 3.7.0-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.7.0-1) unstable; urgency=low . * New upstream version Checksums-Sha1: 628493628d44395253bcfd20e85648bccc9bb9cb 2047 fastaq

Accepted codonw 1.4.4-2 (source amd64) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: codonw - Correspondence Analysis of Codon Usage Changes: codonw (1.4.4-2) unstable; urgency=medium . * Remove nondeterminism - menu.c: Do not print compilation date and time Ch

Accepted aegean 0.14.1+dfsg2-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Changes: aegean (0.14.1+dfsg2-2) unstable; urgency=low . * d/rules: build w/o para

Accepted aragorn 1.2.36-5 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aragorn- tRNA and tmRNA detection in nucleotide sequences Changes: aragorn (1.2.36-5) unstable; urgency=medium . * Fix freeze with -O2/3. * Add simple autopkgtest. * Bump standards version. Ch

Accepted snp-sites 2.1.0-2 (source amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the packa

Accepted genometools 1.5.7-5 (source all amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted genometools 1.5.7-4 (source all amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted codonw 1.4.4-1 (source amd64) into unstable, unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: codonw - Correspondence Analysis of Codon Usage Closes: 805693 Changes: codonw (1.4.4-1) unstable; urgency=low . * Initial release (Closes: #805693) Checksums-Sha1: 9aba9358338040062f0128b206c5223bff1c3836 1896 co

Accepted snp-sites 2.1.0-1 (source amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the packa

Accepted genometools 1.5.7-6 (source all amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Bug#807977: ITP: libtabixpp -- C++ wrapper to tabix indexer

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: libtabixpp Version : 1.0.0 Upstream Author : Erik Garrison <erik.garri...@gmail.com> * URL : https://github.com/ekg/tabixpp * License : MIT Program

Accepted genometools 1.5.7-7 (source all amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted ltrsift 1.0.2-5 (source amd64 all) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: ltrsift- postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data

Accepted snp-sites 2.1.1-1 (source amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the packa

Bug#807779: ITP: snpomatic -- fast, stringent short-read mapping software

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: snpomatic Version : 0.0.20151015 Upstream Author : Heinrich Magnus Manske <m...@sanger.ac.uk> * URL : https://github.com/magnusmanske/snpomatic * License

Accepted kmc 2.3+dfsg-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: kmc- count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Changes: kmc (2.3+dfsg-1) unstable; urgency=medium . [ Kevin Murray ] * Add libkmc-dev package .

Accepted fastaq 3.11.1-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.11.1-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: 9c467116bfdd4dc84382f3f9753f57d37d109f21 2062 fastaq_

Accepted genometools 1.5.8-1 (source all amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for

Accepted aegean 0.15.1+dfsg-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Changes: aegean (0.15.1+dfsg-1) unstable; urgency=medium . * New upstream releas

Accepted aegean 0.15.1+dfsg-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Changes: aegean (0.15.1+dfsg-2) unstable; urgency=medium . * Remove broken archs,

Accepted libtabixpp 1.0.0-1 (source amd64) into unstable, unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libtabixpp-dev - C++ wrapper to tabix indexer (development files) libtabixpp0 - C++ wrapper to tabix indexer libtabixpp0-dbg - C++ wrapper to tabix indexer (debug symbols) Closes: 80

Bug#808350: ITP: libtest-files-perl -- Test::Builder based module to ease testing with files and dirs

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: libtest-files-perl Version : 0.14 Upstream Author : Phil Crow <philcrow2...@yahoo.com> * URL : https://metacpan.org/release/Test-Files * License : Art

Bug#808351: ITP: libfile-grep-perl -- find matches to a pattern in a series of files and related functions

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: libfile-grep-perl Version : 0.02 Upstream Author : Michael K. Neylon <mneylon...@masemware.com> * URL : https://metacpan.org/release/File-Gr

Accepted libtabixpp 1.0.0-2 (source amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libtabixpp-dev - C++ wrapper to tabix indexer (development files) libtabixpp0 - C++ wrapper to tabix indexer libtabixpp0-dbg - C++ wrapper to tabix indexer (debug symb

Bug#808495: ITP: roary -- high speed stand alone pan genome pipeline

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: roary Version : 3.5.7 Upstream Author : Andrew J. Page <ro...@sanger.ac.uk> * URL : http://sanger-pathogens.github.io/Roary/ * License : GPL-3+ Prog

Accepted libfile-grep-perl 0.02-1 (source all) into unstable, unstable

ain...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libfile-grep-perl - module for pattern matching in a series of files Closes: 808351 Changes: libfile-grep-perl (0.02-1) unstable; urgency=low . * Initial Release (Closes: #808351). Ch

Accepted libtest-files-perl 0.14-1 (source all) into unstable, unstable

ain...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libtest-files-perl - module to ease testing with files and directories Closes: 808350 Changes: libtest-files-perl (0.14-1) unstable; urgency=low . * Initial Release (Closes: #808350). Ch

Accepted datatables.js 1.10.9+dfsg-1 (source all) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libjs-jquery-datatables - jQuery plug-in that makes nice tables from different data sources Closes: 719601 Changes: datatables.js (1.10.9+dfsg-1) unstable; urgency=medium . * Initial rel

Accepted aegean 0.14.1+dfsg2-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: aegean - integrated genome analysis toolkit aegean-dbg - integrated genome analysis toolkit, with debug symbols Closes: 798900 Changes: aegean (0.14.1+dfsg2-1) unstable; urgency=medium .

Accepted datatables.js 1.10.10+dfsg-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libjs-jquery-datatables - jQuery plug-in that makes nice tables from different data sources Changes: datatables.js (1.10.10+dfsg-1) unstable; urgency=medium . * New upstream release. Ch

Accepted snp-sites 2.0.2-2 (source amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the packa

Accepted fastaq 3.11.0-1 (source all) into unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.11.0-1) unstable; urgency=medium . * New upstream version. * Add basic autopkgtests. Checksums-Sha1: 8d08979e8217b570a5acfc771588e0ffa

Bug#805693: ITP: codonw -- Correspondence Analysis of Codon Usage

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de> * Package name: codonw Version : 1.4.4 Upstream Author : John Peden <jfp%23hanson-cod...@yahoo.com> * URL : http://codonw.sourceforge.net * License : GPL2 Program

Accepted minimap 0.2-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: libminimap-dev - development headers for libminimap libminimap0 - library for approximate mapping of long biosequences minimap- tool for approximate mapping of long biosequences such as DN

Accepted python-cobra 0.4.1-2 (source all amd64) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - cons

Accepted rdp-readseq 2.0.2-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: rdp-readseq - Ribosomal Database Project (RDP) sequence reading and writing Changes: rdp-readseq (2.0.2-2) unstable; urgency=medium . * Team upload. * Make build reproducible. - Force UTF-8 encoding

Accepted python-ruffus 2.6.3+dfsg-3 (source all) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: python-ruffus - Python computation pipeline library widely used in bioinformatics python-ruffus-doc - documentation for python-ruffus computation pipeline library py

Accepted sspace 2.1.1+dfsg-1 (source all) into unstable, unstable

org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: sspace - scaffolding pre-assembled contigs after extension Closes: 826682 Changes: sspace (2.1.1+dfsg-1) unstable; urgency=low . [ Andreas Tille and Sascha Steinbiss ] * Initial release (Closes: #826682) Ch

Bug#826682: ITP: sspace -- scaffolding pre-assembled contigs after extension

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sas...@steinbiss.name> * Package name: sspace Version : 2.1.1 Upstream Author : Marten Boetzer and Walter Pirovano * URL : https://github.com/nsoranzo/sspace_basic * License : GPL-2 Programmin

Accepted spades 3.8.0+dfsg-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: spades - genome assembler for single-cell and isolates data sets Changes: spades (3.8.0+dfsg-1) unstable; urgency=medium . * New upstream release. * Drop patches that are no longer necessary. * Upd

Accepted python-csb 1.2.3+dfsg-3 (source all) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: python-csb - Python framework for structural bioinformatics python-csb-doc - Python framework for structural bioinformatics (documentation) python3-csb - Python framework fo

Accepted cain 1.10+dfsg-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: cain - simulations of chemical reactions cain-examples - examples for cain cain-solvers - solvers for cain Changes: cain (1.10+dfsg-2) unstable; urgency=medium . * Team uplo

Accepted soapdenovo2 240+dfsg-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: soapdenovo2 - short-read assembly method to build de novo draft assembly Changes: soapdenovo2 (240+dfsg-3) unstable; urgency=medium . [ Sascha Steinbiss ] * Team upload. * Migrate package to Gi

Accepted spades 3.8.1+dfsg-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: spades - genome assembler for single-cell and isolates data sets Changes: spades (3.8.1+dfsg-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 606eae76c4db029e23c9fcaa25d481928

Accepted plast 2.3.1+dfsg-4 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: plast - Parallel Local Sequence Alignment Search Tool plast-example - Parallel Local Sequence Alignment Search Tool (example data) Changes: plast (2.3.1+dfsg-4) unstable; urgency=medium . *

  1   2   3   4   5   6   7   8   9   >