skipping bioinformatics on some architectures ? (was Re: Propose Release Goals (delayed ;) - xz compression)

2013-10-17 Thread Charles Plessy
Le Thu, Oct 17, 2013 at 11:31:23AM +, Thorsten Glaser a écrit :
 
 It’s actually apt/dpkg that takes that much memory because,
 you know, a database listing 3 binary packages in sid *does* take
 quite some RAM. We have the same problem on m68k, but you can’t do much
 against that (except, possibly, use a more memory-efficient internal
 representation in those tools).

Hi Thorsten,

that seems to argue for reducing the list of packages in m68k or other ports.
Some programs are obviously useless on low-power platforms, for instance, most
of the packages with the Field::Biology tag.  If you are interested I would be
willing to inspect the corner cases (such as mencal ?), in order to devise a
better filter for listing the packages related to biology and bioinformatics to
skip on m68k, and other low-power architectures if their porters are intersted.

Cheers,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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Re: skipping bioinformatics on some architectures ? (was Re: Propose Release Goals (delayed ;) - xz compression)

2013-10-17 Thread Antonio Terceiro
On Thu, Oct 17, 2013 at 09:39:34PM +0900, Charles Plessy wrote:
 Le Thu, Oct 17, 2013 at 11:31:23AM +, Thorsten Glaser a écrit :
  
  It’s actually apt/dpkg that takes that much memory because,
  you know, a database listing 3 binary packages in sid *does* take
  quite some RAM. We have the same problem on m68k, but you can’t do much
  against that (except, possibly, use a more memory-efficient internal
  representation in those tools).
 
 Hi Thorsten,
 
 that seems to argue for reducing the list of packages in m68k or other ports.
 Some programs are obviously useless on low-power platforms, for instance, most
 of the packages with the Field::Biology tag.  If you are interested I would be
 willing to inspect the corner cases (such as mencal ?), in order to devise a
 better filter for listing the packages related to biology and bioinformatics 
 to
 skip on m68k, and other low-power architectures if their porters are 
 intersted.

I see your good intention in doing this to help embedded-ish
architectures, but you have to keep in mind that doing this at the
package level does not scale. This use case needs to be solved at the
archive level, like emdebian does.

-- 
Antonio Terceiro terce...@debian.org


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