Accepted libmath-vector-real-kdtree-perl 0.11-1 (source all) into unstable

-maintain...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of Math::Vector::Real Changes: libmath-vector-real-kdtree-perl (0.11-1) unstable; urgency=medium . * Team upload. * New

Accepted librcsb-core-wrapper 1.005-2 (source amd64 all) into unstable

amd64 all Version: 1.005-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0 librcsb-core-wrapper0 - C

Accepted libzerg 1.0.7-6 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: libzerg0 - C library for lexically scanning the output of NCBI BLAST program libzerg0-dbg - debugging symbols for libzerg libzerg0-dev - development libraries and header files for libzerg Changes: libzerg (1.0.7

Accepted metastudent 1.0.11-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: metastudent - predictor of Gene Ontology terms from protein sequence Changes: metastudent (1.0.11-2) unstable; urgency=medium . * Fixed VCS URL. * Fixed python2 dependency handling. Checksums-Sha1

Accepted ncbi-seg 0.0.20000620-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: ncbi-seg - tool to mask segments of low compositional complexity in amino ac ncbi-seg-dbg - debug symbols for ncbi-seg Closes: 742060 Changes: ncbi-seg (0.0.2620-2) unstable; urgency=medium . * Fixes 'fails

Accepted hmmer2 2.3.2-8 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine

Accepted hhsuite 2.0.16-2 (source amd64) into unstable, unstable

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence

Accepted disulfinder 1.2.11-4 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: disulfinder - cysteines disulfide bonding state and connectivity predictor disulfinder-data - data files for predictor of disulfide bonds in proteins Closes: 741559 Changes: disulfinder (1.2.11-4) unstable

Accepted pp-popularity-contest 1.0.6-2 (source amd64)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Closes: 733230 741801 Changes: pp-popularity-contest (1.0.6-2

Accepted freecontact 1.0.21-3 (source amd64 all)

: medium Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor

Accepted ffindex 0.9.9.3-1 (source amd64)

-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted norsnet 1.0.17-1 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: norsnet- tool to identify unstructured loops in proteins Closes: 724159 Changes: norsnet (1.0.17-1) unstable; urgency=low . * New upstream release. * Upstream fixes FTBFS: POD errors (Closes: #724159). Checksums-Sha1

Accepted norsp 1.0.6-1 (source all)

-By: Laszlo Kajan lka...@rostlab.org Description: norsp - predictor of non-regular secondary structure Closes: 724117 Changes: norsp (1.0.6-1) unstable; urgency=low . * New upstream release (Closes: #724117): FTBFS: POD errors. Checksums-Sha1: 298bab0ad74e98df46a50e35cb5f81db773039a2 2006

Accepted librcsb-core-wrapper 1.000-3 (source amd64 all)

amd64 all Version: 1.000-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0 librcsb-core-wrapper0 - C

Accepted pp-popularity-contest 1.0.6-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Closes: 722819 Changes: pp-popularity-contest (1.0.6-1) unstable

Accepted predictprotein 1.0.94-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: predictprotein - suite of protein sequence analysis tools Closes: 724122 Changes: predictprotein (1.0.94-1) unstable; urgency=low . * New upstream release: fixes FTBFS: POD errors (Closes: #724122). Checksums-Sha1

Accepted freecontact 1.0.21-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor library

Accepted libfreecontact-perl 0.08-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-2) unstable; urgency=low . * Updated build dependency to new version of libfreecontact0-dev that fixes

Accepted python-freecontact 1.1-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@debian.org Description: python-freecontact - fast protein contact predictor - binding for Python Closes: 723771 Changes: python-freecontact (1.1-1) unstable; urgency=low . * Initial release (Closes: #723771). Checksums-Sha1

Accepted libfreecontact-perl 0.08-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Closes: 723747 Changes: libfreecontact-perl (0.08-1) unstable; urgency=low . * Initial release (Closes: #723747). Checksums-Sha1

Accepted freecontact 1.0.19-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor library

Accepted freecontact 1.0.20-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor library

Accepted freecontact 1.0.18-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor library

Accepted freecontact 1.0.17-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: freecontact - fast protein contact predictor libfreecontact-doc - documentation for libfreecontact libfreecontact0 - fast protein contact predictor library

Accepted libmath-vector-real-kdtree-perl 0.09-1 (source all)

-maintain...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of Math::Vector::Real Changes: libmath-vector-real-kdtree-perl (0.09-1) unstable; urgency=low . * New upstream release. Checksums

Accepted metastudent 1.0.8-2 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: metastudent - predictor of Gene Ontology terms from protein sequence Changes: metastudent (1.0.8-2) unstable; urgency=low . * This version depends on data packaged as metastudent-data. Checksums-Sha1

Accepted conservation-code 20110309.0-3 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: conservation-code - protein sequence conservation scoring tool Changes: conservation-code (20110309.0-3) unstable; urgency=low . * Allow parsing of Stockholm format as well. * Python3 print(). * usage() prints

Accepted librcsb-core-wrapper 1.000-2 (source amd64 all)

amd64 all Version: 1.000-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0 librcsb-core-wrapper0 - C

Accepted hhsuite 2.0.16-1 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted metastudent-data 1.0.1-2 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Closes: 708715 Changes: metastudent-data (1.0.1-2) unstable; urgency=low . * Added missing build dependency rsync (Closes: #708715

Accepted dssp 2.1.0-1 (source amd64)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: dssp - protein secondary structure assignment based on 3D structure dssp-dbg - debugging symbols for dssp Closes: 708446 Changes: dssp (2.1.0-1) unstable; urgency=low . * New upstream release. * Boost got fixed, bug

Accepted ffindex 0.9.9.1-1 (source amd64)

-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted libgo-perl 0.13-2 (source all)

Changed-By: Laszlo Kajan lka...@debian.org Description: libgo-perl - perl modules for GO and other OBO ontologies Closes: 700037 Changes: libgo-perl (0.13-2) unstable; urgency=low . * Added missing libgraphviz-perl dependency (Closes: #700037). Checksums-Sha1

Accepted libgo-perl 0.13-3 (source all)

Changed-By: Laszlo Kajan lka...@debian.org Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.13-3) unstable; urgency=low . * Clean upload without the t/data/* that got into 0.13-2 by mistake. Checksums-Sha1: ecd6dd227827da4f72d8dddc57a819a68e99490c

Accepted ffindex 0.9.9-2 (source amd64)

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted ffindex 0.9.9-1 (source amd64)

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted librostlab-blast 1.0.1-2 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0 - very fast C++ library for parsing the output

Accepted dma 0.0.2010.06.17-14.1 (source amd64)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Sun, 25 Nov 2012 20:19:16 + Source: dma Binary: dma dma-migrate Architecture: source amd64 Version: 0.0.2010.06.17-14.1 Distribution: unstable Urgency: low Maintainer: Michael Banck mba...@debian.org Changed-By: Laszlo Kajan lka

Accepted librostlab 1.0.20-2 (source amd64 all)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3 - C++ library for computational biology librostlab3-dbg - debugging symbols for librostlab

Accepted librostlab-blast 1.0.1-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0 - very fast C++ library for parsing the output

Accepted concavity 0.1-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: concavity - predictor of protein ligand binding sites from structure and cons concavity-dbg - predictor of protein ligand binding sites (debug) Closes: 693017 Changes: concavity (0.1-2) unstable; urgency=low . * Added cmd

Accepted concavity 0.1-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: concavity - predictor of protein ligand binding sites from structure and cons concavity-dbg - predictor of protein ligand binding sites (debug) Closes: 689020 Changes: concavity (0.1-1) unstable; urgency=low . * Initial

Accepted conservation-code 20110309.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: conservation-code - protein sequence conservation scoring tool Closes: 690058 Changes: conservation-code (20110309.0-1) unstable; urgency=low . * Initial release. (Closes: #690058) Checksums-Sha1

Accepted proftmb 1.1.12-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels proftmb-dbg - debugging symbols for proftmb Changes: proftmb (1.1.12-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted sift 4.0.3b-4 (source amd64)

-By: Laszlo Kajan lka...@rostlab.org Description: sift - predicts if a substitution in a protein has a phenotypic effect Changes: sift (4.0.3b-4) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: Add citations . [ Laszlo Kajan ] * Merge updates from Ubuntu 4.0.3b

Accepted profphd-utils 1.0.10-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: profphd-utils - profphd helper utilities convert_seq and filter_hssp Changes: profphd-utils (1.0.10-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: 8d28f8daf0088b2cf0a12e706b1b6d778b5f10aa 2046 profphd

Accepted ffindex 0.9.8-1 (source amd64)

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted libmath-vector-real-kdtree-perl 0.05-1 (source all)

-maintain...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of Math::Vector::Real Changes: libmath-vector-real-kdtree-perl (0.05-1) unstable; urgency=low . [ Laszlo Kajan ] * Added

Accepted librg-blast-parser-perl 0.03-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Changes: librg-blast-parser-perl (0.03-1) unstable; urgency=low . * New upstream release. * Added hardening flags. Checksums-Sha1

Accepted proftmb 1.1.11-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels proftmb-dbg - debugging symbols for proftmb Changes: proftmb (1.1.11-1) unstable; urgency=low . * Added debug package. * New upstream release

Accepted predictprotein 1.0.87-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: predictprotein - suite of protein sequence analysis tools Changes: predictprotein (1.0.87-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: 4772342659686ce559e9bfff6e9ea0b020fde6c2 2115 predictprotein_1.0.87

Accepted profnet 1.0.22-1 (source amd64)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: profnet-bval - neural network architecture for profbval profnet-chop - neural network architecture for profchop profnet

Accepted librcsb-core-wrapper 1.000-1 (source amd64 all)

amd64 all Version: 1.000-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0 librcsb-core-wrapper0 - C

Accepted ncbi-seg 0.0.20000620-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ncbi-seg - tool to mask segments of low compositional complexity in amino ac ncbi-seg-dbg - debug symbols for ncbi-seg Closes: 680233 Changes: ncbi-seg (0.0.2620-1) unstable; urgency=low . * Initial version

Accepted norsp 1.0.5-1 (source all)

-By: Laszlo Kajan lka...@rostlab.org Description: norsp - predictor of non-regular secondary structure Closes: 684856 Changes: norsp (1.0.5-1) unstable; urgency=low . * New upstream release (Closes: #684856) Checksums-Sha1: 92aef11519d5313a0f74b3a801b681cb9ecd14d2 2021 norsp_1.0.5-1.dsc

Accepted profphd 1.0.39-1 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: profphd- secondary structure and solvent accessibility predictor Closes: 684857 Changes: profphd (1.0.39-1) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: Make author field BibTeX compliant . [ Laszlo Kajan

Accepted hmmer2 2.3.2-6 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine

Accepted norsnet 1.0.16-1 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: norsnet- tool to identify unstructured loops in proteins Closes: 681108 Changes: norsnet (1.0.16-1) unstable; urgency=low . [ Christian Mertes ] * Packaged for Debian (Closes: #681108) Checksums-Sha1

Accepted profbval 1.0.22-1 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: profbval - predictor of flexible/rigid protein residues from sequence Closes: 680140 Changes: profbval (1.0.22-1) unstable; urgency=low . * Initial release in Debian (Closes: #680140) Checksums-Sha1

Accepted libnhgri-blastall-perl 0.66-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libnhgri-blastall-perl - Perl extension for running and parsing NCBI's BLAST 2.x Closes: 680177 Changes: libnhgri-blastall-perl (0.66-1) unstable; urgency=low . * Initial release (Closes: 680177). . [Laszlo Kajan

Accepted libzerg 1.0.7-5 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libzerg0 - C library for lexically scanning the output of NCBI BLAST program libzerg0-dbg - debugging symbols for libzerg libzerg0-dev - development libraries and header files for libzerg Changes: libzerg (1.0.7-5

Accepted libzerg-perl 1.0.4-3 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libzerg-perl - fast perl module for parsing the output of NCBI BLAST programs Closes: 680425 Changes: libzerg-perl (1.0.4-3) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: - copy of libzerg upstream file

Accepted libmath-vector-real-kdtree-perl 0.04-1 (source all)

-maintain...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of Math::Vector::Real Closes: 676579 Changes: libmath-vector-real-kdtree-perl (0.04-1) unstable; urgency=low . * [Shen Wei w

Accepted libmath-vector-real-perl 0.09-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libmath-vector-real-perl - Perl module for real number vector arithmetic Closes: 676570 Changes: libmath-vector-real-perl (0.09-1) unstable; urgency=low . * [Shen Wei w...@rostlab.org] and [Laszlo Kajan lka

Accepted hhsuite 2.0.15-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted ffindex 0.9.6.1-1 (source amd64)

-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted libsort-key-top-perl 0.06-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libsort-key-top-perl - select and sort top n elements in Perl Closes: 676384 Changes: libsort-key-top-perl (0.06-1) unstable; urgency=low . * Initial release (Closes: #676384) Checksums-Sha1

Accepted profphd-utils 1.0.9-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: profphd-utils - profphd helper utilities convert_seq and filter_hssp Changes: profphd-utils (1.0.9-1) unstable; urgency=low . * New upstream release. * Changed from cdbs to dh. Checksums-Sha1

Accepted hhsuite 2.0.14-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted sift 4.0.3b-3 (source amd64)

-By: Laszlo Kajan lka...@rostlab.org Description: sift - predicts if a substitution in a protein has a phenotypic effect Changes: sift (4.0.3b-3) unstable; urgency=low . * Added patches from Michael Bienia ge...@ubuntu.com. Checksums-Sha1: 198ab5eeba43775830f680ac9fa2388f9d60d8c9 2025

Accepted dssp 2.0.4-1 (source amd64)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: dssp - protein secondary structure assignment based on 3D structure dssp-dbg - debugging symbols for dssp Closes: 669259 Changes: dssp (2.0.4-1) unstable; urgency=low . * Initial release. (Closes: #669259) * Added description

Accepted ffindex 0.9.3-2 (source amd64)

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted librg-blast-parser-perl 0.02-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Changes: librg-blast-parser-perl (0.02-2) unstable; urgency=low . * [Andreas Tille ti...@debian.org] debian/control: Restored

Accepted librg-blast-parser-perl 0.02-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for perl Closes: 666194 Changes: librg-blast-parser-perl (0.02-1) unstable; urgency=low . * Initial release in Debian (Closes: #666194) Checksums

Accepted pp-popularity-contest 1.0.5-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Closes: 667330 Changes: pp-popularity-contest (1.0.5-1) unstable

Accepted librostlab-blast 1.0.0-2 (source all amd64)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0 - very fast C++ library for parsing the output

Accepted hhsuite 2.0.13-2 (source all amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted librostlab-blast 1.0.0-1 (source all amd64)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librostlab-blast-doc - very fast C++ library for parsing NCBI BLAST output (library doc) librostlab-blast0 - very fast C++ library for parsing NCBI BLAST

Accepted sift 4.0.3b-2 (source amd64)

-By: Laszlo Kajan lka...@rostlab.org Description: sift - predicts if a substitution in a protein has a phenotypic effect Changes: sift (4.0.3b-2) unstable; urgency=low . * Missing dependency blimps-utils added. blimps-utils provides fastaseqs, called by some scripts in sift

Accepted sift 4.0.3b-1 (source amd64)

-By: Laszlo Kajan lka...@rostlab.org Description: sift - predicts if a substitution in a protein has a phenotypic effect Closes: 660272 Changes: sift (4.0.3b-1) unstable; urgency=low . * Initial release (Closes: #660272) Checksums-Sha1: d7dd1d2b3ab13629f2f618c7bb951b4e18aa0ee8 1387

Accepted hhsuite 2.0.13-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted hhsuite 2.0.12-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: hhsuite- sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching

Accepted ffindex 0.9.3-1 (source amd64)

-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: ffindex- simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge

Accepted proftmb 1.1.10-1 (source amd64)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels Changes: proftmb (1.1.10-1) unstable; urgency=low . * New upstream release Checksums-Sha1: 60a50d35f676be54450ff87cd6e3f867467403e6 2007 proftmb_1.1.10-1.dsc

Accepted proftmb 1.1.9-1 (source amd64)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels Changes: proftmb (1.1.9-1) unstable; urgency=low . * New upstream release Checksums-Sha1: c62216b936a58d610bd2c944a0a279fd789ecffc 2000 proftmb_1.1.9-1.dsc

Accepted proftmb 1.1.8-1 (source amd64)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels Closes: 659964 Changes: proftmb (1.1.8-1) unstable; urgency=low . * Initial release (Closes: #659964) Checksums-Sha1: 91103bf32b18031b3cb55611d425fe87e72f521b

Accepted reprof 1.0.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor reprof - protein secondary structure and accessibility predictor Changes: reprof (1.0.1-1) unstable; urgency=low . * New upstream

Accepted reprof 1.0.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor reprof - protein secondary structure and accessibility predictor Closes: 655336 Changes: reprof (1.0.0-1) unstable; urgency=low

Accepted libai-fann-perl 0.10-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libai-fann-perl - Perl wrapper for the FANN library Closes: 649995 Changes: libai-fann-perl (0.10-1) unstable; urgency=low . * Initial release (Closes: #649995) Checksums-Sha1: ce1d0f56a472c529522eb31b43546f7014ceb580 1453

Accepted profnet 1.0.21-1 (source amd64)

Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: profnet-bval - neural network architecture for profbval profnet-chop - neural network architecture for profchop profnet

Accepted librg-utils-perl 1.0.43-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-utils-perl - parsers and format conversion utilities used by (e.g.) profphd Changes: librg-utils-perl (1.0.43-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted pp-popularity-contest 1.0.4-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Closes: 644057 Changes: pp-popularity-contest (1.0.4-1) unstable

Accepted coils 2002-3 (source amd64)

-By: Laszlo Kajan lka...@rostlab.org Description: ncoils - coiled coil secondary structure prediction Changes: coils (2002-3) unstable; urgency=low . * perl script coils-wrap.pl moved from doc to /usr/bin as 'coils-wrap' * improved man pages * updated upstream URL * removed

Accepted pp-popularity-contest 1.0.3-3 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Closes: 644002 Changes: pp-popularity-contest (1.0.3-3) unstable

Accepted pp-popularity-contest 1.0.3-2 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: pp-popularity-contest - PredictProtein popularity contest pp-popularity-contest-dbg - debug files for pp-popularity-contest Changes: pp-popularity-contest (1.0.3-2) unstable; urgency=low

Accepted librg-utils-perl 1.0.42-1 (source all)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: librg-utils-perl - parsers and format conversion utilities used by (e.g.) profphd Closes: 643630 Changes: librg-utils-perl (1.0.42-1) unstable; urgency=low . * Initial release (Closes: #643630) * New upstream release

Accepted profphd 1.0.37-1 (source all)

Changed-By: Laszlo Kajan lka...@rostlab.org Description: profphd- secondary structure and solvent accessibility predictor Closes: 643324 Changes: profphd (1.0.37-1) unstable; urgency=low . * Initial release in Debian (Closes: #643324) * New upstream release Checksums-Sha1

Accepted profphd-utils 1.0.8-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: profphd-utils - profphd helper utilities convert_seq and filter_hssp Closes: 643323 Changes: profphd-utils (1.0.8-1) unstable; urgency=low . * Initial release in Debian (Closes: #643323) Checksums-Sha1

Accepted libzerg 1.0.7-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libzerg-dbg - debugging symbols for libzerg libzerg-dev - C library for parsing the output of NCBI BLAST programs libzerg0 - C library for parsing the output of NCBI BLAST programs Changes: libzerg (1.0.7-2

Accepted libzerg-perl 1.0.4-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Laszlo Kajan lka...@rostlab.org Description: libzerg-perl - fast perl module for parsing the output of NCBI BLAST programs Changes: libzerg-perl (1.0.4-2) unstable; urgency=low . * added new tokens from libzerg-1.0.7-2 * Report.pm now understands blastpgp output, i.e

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