org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
gubbins- phylogenetic analysis of genome sequences
Changes:
gubbins (2.2.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
Checksums-Sha1:
cbbe1167d983e4e93d5c7d09a7e23aed310bb42d 2153 gub
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 25 Oct 2016 08:34:58 +0200
Source: coyim
Binary: coyim
Architecture: source amd64
Version: 0.3.7-1
Distribution: unstable
Urgency: medium
Maintainer: Sascha Steinbiss <sa...@debian.org>
Changed-By: Sascha Steinbi
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.4.0+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
fe7dbfa295cd0818a90c7fe667ad2fe160e9b166 2176 ariba_2.
Maintainer: Debian Go Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-thecreeper-go-notify-dev - implementation of the GNOME DBus
Notifications Specification
Closes: 841901
Changes:
golang-github-thecreep
Maintainer: Debian Go Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-twstrike-gotk3adapter-dev - adapters and interfaces for gotk3
Closes: 841899
Changes:
golang-github-twstrike-gotk3
Maintainer: Debian Go Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-hydrogen18-stalecucumber-dev - Reader and writer for Python's
pickle format in Golang
Closes: 841898
Changes:
golang-githu
: Debian Go Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-dhowett-go-plist-dev - pure Go Apple Property List transcoder
Closes: 841905
Changes:
golang-github-dhowett-go-plist (0.0~git20160708.0.fec78c8
Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-twstrike-otr3-dev - Go implementation of the OTR 3 protocol
Closes: 841892
Changes:
golang-github-twstrike-otr3 (0.0~git20161015.0.744856d-1) unstab
Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-voxelbrain-goptions-dev - flexible Go parser for command line
options
Closes: 841902
Changes:
golang-github-voxelbrain-goptions (2.5.11-1) unstable; ur
: Debian Go Packaging Team
<pkg-go-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
golang-github-gotk3-gotk3-dev - Go bindings for GTK3
Closes: 841893
Changes:
golang-github-gotk3-gotk3 (0.0~GOTK3~0~2~0+git20161020.501.2caa15f-1)
unsta
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
gubbins- phylogenetic analysis of genome sequences
Closes: 839320
Changes:
gubbins (2.1.0-2) unstable; urgency=medium
.
* Team upload.
* Disable tests to address FTBFS caused by failed build time tests
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
samtools - processing sequence alignments in SAM and BAM formats
samtools-test - test files for the samtools package
Closes: 840974
Changes:
samtools (1.3.1-3) unstable; urgency=medium
.
* Team upload.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
python3-pymummer - Python 3 interface to MUMmer
Changes:
python-pymummer (0.9.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
Checksums-Sha1:
e7f6d212810c93a27880d3cb3cf36249d
y-t...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
princeprocessor - standalone password candidate generator using the PRINCE
algorith
Closes: 840826
Changes:
princeprocessor (0.21-3) unstable; urgency=medium
.
* Rename executable to avoi
y-t...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
princeprocessor - standalone password candidate generator using the PRINCE
algorith
Changes:
princeprocessor (0.21-2) unstable; urgency=medium
.
* Restrict architectures to 64-bit ones.
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Tue, 16 Aug 2016 05:49:21 +
Source: princeprocessor
Binary: princeprocessor
Architecture: source amd64
Version: 0.21-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss <sa...@debian.org>
Changed-By:
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.3.0+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
f9b89574d8a9af62277e91ae83fc4fb06ebf8d50 2176 ariba_2.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
aragorn- tRNA and tmRNA detection in nucleotide sequences
Changes:
aragorn (1.2.38-1) unstable; urgency=medium
.
* New upstream release.
* Use upstream's manpage instead of building our own.
* Fix minor spe
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
parsnp - rapid core genome multi-alignment
Closes: 838174
Changes:
parsnp (1.2+dfsg-2) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Add copyright statement at ftpmaster request
.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ruby-rgfa - parse, edit and write GFA format graphs in Ruby
Changes:
ruby-rgfa (1.3.1-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
063ad0a14d9f101e6e254dcb3991c06a87c460ea 1984 ruby-rgfa
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ruby-rgfa - parse, edit and write GFA format graphs in Ruby
Closes: 838856
Changes:
ruby-rgfa (1.3-1) unstable; urgency=medium
.
* Initial release (Closes: #838856)
Checksums-Sha1:
3600cb854bcfecfc5682329ceec10e7a1
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
lambda-align - Local Aligner for Massive Biological DatA
Closes: 840027
Changes:
lambda-align (1.0.0-3) unstable; urgency=medium
.
* Fix FTBFS on 32-bit platforms.
Thanks to Hannes Hauswedell for patch review a
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
lambda-align - Local Aligner for Massive Biological DatA
Closes: 840028 840156
Changes:
lambda-align (1.0.0-2) unstable; urgency=medium
.
* Set versioned dependency for libseqan2-dev.
Thanks to A
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
lambda-align - Local Aligner for Massive Biological DatA
Closes: 834940
Changes:
lambda-align (1.0.0-1) unstable; urgency=medium
.
* Initial release (Closes: #834940)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
circlator - circularize genome assemblies
Changes:
circlator (1.3.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
* Drop obsolete override.
Checksums-Sha1:
3ab1d28704ebd1ba35a35d18f936
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
iva- iterative virus sequence assembler
Changes:
iva (1.0.7+ds-2) unstable; urgency=medium
.
* disable multiprocessing related test case to fix potential FTBFS
Checksums-Sha1:
8e95f456a36c26f092f864e74594933ba
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
augustus - gene prediction in eukaryotic genomes
augustus-data - data files for AUGUSTUS
augustus-doc - documentation files for AUGUSTUS
Changes:
augustus (3.2.2+dfsg-2) unsta
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
seqan-dev - C++ library for the analysis of biological sequences (development
Changes:
seqan (1.4.2+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Declare Conflicts: with libseqan2-dev (API incompatible)
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libseqan2-dev - C++ library for the analysis of biological sequences
(development
seqan-apps - C++ library for the analysis of biological sequences
Closes: 838340
Changes:
seqan2 (2.2.0+dfsg
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
roary - high speed stand alone pan genome pipeline
Changes:
roary (3.7.0+dfsg-1) unstable; urgency=medium
.
* New upstream release.
* Fix spelling.
Checksums-Sha1:
59810f2f48534edb2c674550da85b24889297448 2467
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ugene - integrated bioinformatics toolkit
ugene-data - required data for UGENE - integrated bioinformatics toolkit
Changes:
ugene (1.24.2+dfsg-1) unstable; urgency=medium
.
* Team upload.
*
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
swarm - robust and fast clustering method for amplicon-based studies
Changes:
swarm-cluster (2.1.9-1) unstable; urgency=medium
.
* Team upload.
* New upstream version.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
python3-typed-ast - AST with PEP 484 type comments support
Changes:
python3-typed-ast (0.5.6-1) unstable; urgency=medium
.
* Team upload.
* New upstream version.
* Drop obsolete d/cop
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
mssstest - Normalisation of disease scores for patients with Multiple Sclero
Closes: 836930
Changes:
mssstest (3.0-5) unstable; urgency=medium
.
* Team upload.
* Fix building with GCC 6.
- Add missi
med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
arb- phylogenetic sequence analysis suite - main program
arb-common - phylogenetic sequence analysis suite - common files
arb-doc- phylogenetic sequence analysis suite - d
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
salmon - wicked-fast transcript quantification from RNA-seq data
Changes:
salmon (0.7.2+ds1-2) unstable; urgency=medium
.
* Team upload.
* Fix FTBFS by fixing parallel test runs.
* Work towards reproducibili
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libpicard-java - Java library to manipulate SAM and BAM files
libpicard-java-doc - Documentation for the java picard library
picard-tools - Command line tools to manipulate
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
biosquid - utilities for biological sequence analysis
biosquid-dev - headers and static library for biological sequence analysis
Changes:
biosquid (1.9g+cvs20050121-7) unstable; urgency=medium
med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
hmmer - profile hidden Markov models for protein sequence analysis
hmmer-doc - profile hidden Markov models for protein sequence analysis (docs)
hmmer-examples - profile hidden M
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
hmmer2 - profile hidden Markov models for protein sequence analysis
hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs)
hmmer2-pvm - HMMER programs with PVM (Para
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
bowtie - Ultrafast memory-efficient short read aligner
bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short
read al
Changes:
bowtie (1.1.2-5) unstable; urgency=medium
.
*
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
iva- iterative virus sequence assembler
Changes:
iva (1.0.7+ds-1) unstable; urgency=medium
.
* Add Vcs-Git.
* Update uploader email.
* New upstream release.
* Drop patches applied by upstream.
Ch
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
vsearch- tool for processing metagenomic sequences
Changes:
vsearch (2.0.3-2) unstable; urgency=medium
.
* Team upload.
* Make build reproducible.
- Stop overriding compiler flags in configure.ac.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
subread- toolkit for processing next-gen sequencing data
subread-data - data files for subread package
Changes:
subread (1.5.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
y-t...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
statsprocessor - word generator based on per-position Markov chains
Changes:
statsprocessor (0.11-3) unstable; urgency=medium
.
* Migrate package to pkg-security team.
Ch
y-t...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
maskprocessor - high-performance word generator with a per-position
configurable
Changes:
maskprocessor (0.73-2) unstable; urgency=medium
.
* Migrate package to pkg-security team.
Ch
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
genometools - versatile genome analysis toolkit
genometools-common - shared data files for
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
wise - comparison of biopolymers, like DNA and protein sequences
wise-data - data files for the wise package
wise-doc - documentation for the wise package
Changes:
wise (2.4.1-19) unstable; ur
ain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
onioncircuits - GTK+ application to display Tor circuits and streams
Closes: 836121
Changes:
onioncircuits (0.4-3) unstable; urgency=medium
.
* Do not use dbus-launch to set up dbus environment.
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.5+ds-1) unstable; urgency=medium
.
* New upstream release.
* Drop dependency on samtools and bcftools.
Ch
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libhat-trie-dev - Development headers and static libraries for HAT-trie library
libhat-trie0 - HAT-trie, an extremely efficient (space and time) modern variant
Changes:
libhat-trie (0.0~g
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
toppred- transmembrane topology prediction
Changes:
toppred (1.10-4) unstable; urgency=medium
.
* Team upload.
* Make build reproducible.
- Remove entries with build directories (which would be gone anyway)
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Changes:
mash (1.1.1-1) unsta
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
rate4site - detector of conserved amino-acid sites
Changes:
rate4site (3.0.0-4) unstable; urgency=medium
.
* Team upload.
* Make build reproducible by ensuring -fdebug-prefix-map is set.
Thanks to Rei
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
hisat2 - graph-based alignment of short nucleotide reads to many genomes
Closes: 834862 834864
Changes:
hisat2 (2.0.4-2) unstable; urgency=medium
.
* Team upload.
* Fix Vcs-Git.
* Fix build on kFreeBSD. Than
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
biosquid - utilities for biological sequence analysis
biosquid-dev - headers and static library for biological sequence analysis
Changes:
biosquid (1.9g+cvs20050121-6) unstable; urgency=medium
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
bowtie2- ultrafast memory-efficient short read aligner
bowtie2-examples - Examples for bowtie2
Changes:
bowtie2 (2.2.9-4) unstable; urgency=medium
.
* Team upload.
* Make build reproducib
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.4+ds-1) unstable; urgency=medium
.
* New upstream release.
* Adjust pymummer dependency to min version 0.8.1.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
python3-pymummer - Python 3 interface to MUMmer
Changes:
python-pymummer (0.8.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
* Bump Standards-Version.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
rna-star - ultrafast universal RNA-seq aligner
Changes:
rna-star (2.5.2b+dfsg-1) unstable; urgency=medium
.
* New upstream release.
* Remove x32 from archs.
Checksums-Sha1:
694febb1bbfc11c35672cae8733e
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.3+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
8f801f944b434d63ab1377b893a82fa643550047 2205 ariba_2.
med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libssw-dev - Development headers and static libraries for libssw
libssw-java - Java bindings for libssw
libssw0- fast SIMD parallelized implementation of the Smith-Waterman algor
ssw-al
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.2+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
dc8b9efe012e6a110ef038d36784fa1e7f2d46af 2205 ariba_2.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
dindel - determines indel calls from short-read data
Closes: 833958
Changes:
dindel (1.01+dfsg-4) unstable; urgency=medium
.
* Team upload.
* Make code compatible with latest Boost version (1.61 and up).
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.1+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
c7003df4b9525d1ab73a15dcbe4c1673516475b8 2205 ariba_2.
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.2.0+ds-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
7120067210f6e42f3f5883dfdde16cc9bf77ffe8 2205 ariba_2.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
metastudent-data - predictor of Gene Ontology terms from protein sequence -
data fil
Changes:
metastudent-data (2.0.1-1) unstable; urgency=medium
.
* Team upload.
.
[ Tobias Hamp ]
* New upst
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Tue, 16 Aug 2016 18:25:36 +
Source: statsprocessor
Binary: statsprocessor
Architecture: source amd64
Version: 0.11-2
Distribution: unstable
Urgency: medium
Maintainer: Sascha Steinbiss <sa...@debian.org>
Changed-By:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Tue, 16 Aug 2016 05:35:40 +
Source: statsprocessor
Binary: statsprocessor
Architecture: source amd64
Version: 0.11-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss <sa...@debian.org>
Changed-By:
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
sspace - scaffolding pre-assembled contigs after extension
Changes:
sspace (2.1.1+dfsg-2) unstable; urgency=medium
.
* Update uploader email address.
* Add build time tests.
* Add bowtie to B-D.
Ch
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
roary - high speed stand alone pan genome pipeline
Changes:
roary (3.6.8+dfsg-2) unstable; urgency=medium
.
* d/tests/control: Add 'allow-stderr' restriction.
libfile-slurper-perl update to 0.009-1 introduced a
all
Version: 6.1.20120620-11
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
blast2 - Basic Local Alignment Search Tool
libncbi6 - NC
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
fastaq - FASTA and FASTQ file manipulation tools
Changes:
fastaq (3.13.0-1) unstable; urgency=medium
.
* Update maintainer email.
* New upstream version.
* Bump Standards-Version.
* Fix spelling.
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
miniasm- ultrafast de novo assembler for long noisy DNA sequencing reads
Changes:
miniasm (0.2+dfsg-2) unstable; urgency=medium
.
* Change maintainer email.
* Add EDAM annotations.
* Bump Standards-Versi
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.4.0-3) unstable; urgency=medium
.
* Team upload.
* Make build reproducible.
Checksums-Sha1:
93829bcc8455401e10c281d746e2e40a9
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Format: 1.8
Date: Thu, 04 Aug 2016 19:36:54 +
Source: maskprocessor
Binary: maskprocessor
Architecture: source amd64
Version: 0.73-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss <sa...@debian.org>
Changed-By: Sascha Ste
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
dindel - determines indel calls from short-read data
Changes:
dindel (1.01+dfsg-3) unstable; urgency=medium
.
* Team upload.
* Force use of Boost 1.58 to fix FTBFS with newer Boost versions.
* Bump Stand
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
infernal - inference of RNA secondary structural alignments
infernal-doc - inference of RNA secondary structural alignments – documentation
Changes:
infernal (1.1.2-1) unstable; urgency=medium
.
*
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Closes: 831151
Changes:
nanopolish (0.4.0-2) unstable; urgency=medium
.
* Team upload.
* Fix FTBFS with GCC 6 (Closes: #831151)
* Enable fu
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Closes: 831110
Changes:
trinityrnaseq (2.2.0+dfsg
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ariba - Antibiotic Resistance Identification By Assembly
Changes:
ariba (2.1.0+ds-1) unstable; urgency=medium
.
* New upstream release.
* Adjust dependencies to new upstream requirements.
* Drop pat
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
fml-asm- tool for assembling Illumina short reads in small regions
libfml-dev - development headers for libfml
libfml0- library for assembling Illumina short reads in small regions
Changes:
fer
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
fml-asm- tool for assembling Illumina short reads in small regions
libfml-dev - development headers for libfml
libfml0- library for assembling Illumina short reads in small regions
Closes: 83
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
vsearch- tool for processing metagenomic sequences
Closes: 831131
Changes:
vsearch (2.0.3-1) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* New upstream version (builds with GCC6, clo
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
dindel - determines indel calls from short-read data
Closes: 831208
Changes:
dindel (1.01+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Fix FTBFS with GCC 6.
Closes: #831208
Ch
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
prime-phylo - bayesian estimation of gene trees taking the species tree into ac
Closes: 84
Changes:
prime-phylo (1.0.11-4) unstable; urgency=medium
.
* Team upload.
* fix FTBFS with Boost 1.60 (Clo
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
roary - high speed stand alone pan genome pipeline
Changes:
roary (3.6.8+dfsg-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
792f9e0691d3c2bc8a7f9fbfbba9398310792916 2467 roary_3.6.
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
python-dendropy - DendroPy Phylogenetic Computing Library (Python 2)
python3-dendropy - DendroPy Phylogenetic Computing Library (Python 3)
sumtrees - Phylogenetic Tree S
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libminimap-dev - development headers for libminimap
libminimap0 - library for approximate mapping of long biosequences
minimap- tool for approximate mapping of long biosequences such as DNA
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
ugene - integrated bioinformatics toolkit
ugene-data - required data for UGENE - integrated bioinformatics toolkit
Closes: 831326 831374
Changes:
ugene (1.23.1+dfsg-1) unstable; urgency=medium
.
*
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
roary - high speed stand alone pan genome pipeline
Changes:
roary (3.6.6+dfsg-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
5d619836eccb0b5f871c4cbe5fcd02e257908c22 2467 roary_3.6.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
prime-phylo - bayesian estimation of gene trees taking the species tree into ac
Closes: 812031
Changes:
prime-phylo (1.0.11-3) unstable; urgency=medium
.
* Team upload.
* Fix building with GCC 6 (Clo
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
spades - genome assembler for single-cell and isolates data sets
Changes:
spades (3.9.0+dfsg-1) unstable; urgency=medium
.
* New upstream release.
* Add copyright entry for cxxopts.
* Add rnaSPAdes manpa
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
genometools - versatile genome analysis toolkit
genometools-common - shared data files for
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
swarm - robust and fast clustering method for amplicon-based studies
Closes: 811893
Changes:
swarm-cluster (2.1.8-2) unstable; urgency=medium
.
* Team upload.
* Fix building with GCC 6.
Closes: #811893
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
genometools - versatile genome analysis toolkit
genometools-common - shared data files for
org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
roary - high speed stand alone pan genome pipeline
Changes:
roary (3.6.5+dfsg-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
68494ea719fa1d9efa2899456c58c015dc62fdbd 2467 roary_3.6.
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Closes: 832068
Changes:
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
subread- toolkit for processing next-gen sequencing data
subread-data - data files for subread package
Changes:
subread (1.5.0-p3+dfsg-3) unstable; urgency=medium
.
* Team upload.
* Fur
kag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Changes:
mash (1.1-2) unsta
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