Accepted profphd 1.0.42-2 (source) into unstable

org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profphd- secondary structure and solvent accessibility predictor Changes: profphd (1.0.42-2) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * cme fix dpkg-control * cme fix dpkg-copyri

Accepted metastudent 2.0.1-4 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: metastudent - predictor of Gene Ontology terms from protein sequence Closes: 848903 Changes: metastudent (2.0.1-4) unstable; urgency=medium . * Team upload * add details on package testsuite failure to R

Accepted metastudent-data 2.0.1-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Closes: 848394 Changes: metastudent-data (2.0.1-2) unstable; urgency=medium . [ Andreas Tille ] * Team upload.

Accepted predictprotein 1.1.07-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: predictprotein - suite of protein sequence analysis tools Changes: predictprotein (1.1.07-2) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * cme fix dpkg-control * a

Accepted pymol 1.8.2.1+dfsg-1 (source all amd64) into unstable, unstable

org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: pymol - Molecular Graphics System pymol-data - data files for PyMOL Closes: 506202 777619 Changes: pymol (1.8.2.1+dfsg-1) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * New upst

Accepted libgo-perl 0.15-4 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.15-4) unstable; urgency=medium . * Team upload. * add libyaml-perl to debian/control * add GO/Handlers/obj_yaml.pm an

Accepted proftmb 1.1.12-6 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels proftmb-dbg - debugging symbols for proftmb Changes: proftmb (1.1.12-6) unstable; urgency=medium . * Team upload. * add

Accepted profbval 1.0.22-4 (source) into unstable

org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profbval - predictor of flexible/rigid protein residues from sequence Changes: profbval (1.0.22-4) unstable; urgency=medium . * Team upload. * added allow-stderr restriction to debian/tests/control -

Accepted metastudent 2.0.1-3 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: metastudent - predictor of Gene Ontology terms from protein sequence Changes: metastudent (2.0.1-3) unstable; urgency=medium . * Team upload. * add allow-stderr restriction to debian/tests/control Ch

Accepted libtfbs-perl 0.7.0+dfsg-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libtfbs-perl - scanning DNA sequence with a position weight matrix Changes: libtfbs-perl (0.7.0+dfsg-3) unstable; urgency=medium . * Team upload. * add tests (except smoke tests - since debian/te

Accepted reprof 1.0.1-4 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Changes: reprof (1.0.1-4) unsta

Accepted librostlab 1.0.20-6 (source all amd64) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3 - C++ library for computational biology librostlab3-dbg - debug

Accepted libzerg 1.0.7-8 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libzerg0 - C library for lexically scanning the output of NCBI BLAST program libzerg0-dbg - debugging symbols for libzerg libzerg0-dev - development libraries and header files for lib

Accepted metastudent 2.0.1-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: metastudent - predictor of Gene Ontology terms from protein sequence Changes: metastudent (2.0.1-2) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * cme fix dpkg-control * cme fix dp

Accepted libgo-perl 0.15-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.15-3) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * add autopkgtest-pkg-perl as a testsuite + run cme fix

Accepted librg-utils-perl 1.0.43-4 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librg-utils-perl - parsers and format conversion utilities used by (e.g.) profphd Changes: librg-utils-perl (1.0.43-4) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. *

Accepted profnet 1.0.22-3 (source amd64) into unstable

Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profnet-bval - neural network architecture for profbval profnet-chop - neural network architecture

Accepted profisis 1.0.11-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profisis - prediction of protein-protein interaction sites from sequence Changes: profisis (1.0.11-3) unstable; urgency=medium . * Team upload. * cme fix dpkg-control * add simple testsuite * add harden

Accepted librostlab 1.0.20-5 (source all amd64) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3 - C++ library for computational biology librostlab3-dbg - debug

Accepted reprof 1.0.1-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Changes: reprof (1.0.1-3) unsta

Accepted profphd-utils 1.0.10-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profphd-utils - profphd helper utilities convert_seq and filter_hssp Changes: profphd-utils (1.0.10-3) unstable; urgency=medium . * Team upload. * add debian/examples/ to use with testsuite *

Accepted librostlab-blast 1.0.1-7 (source) into unstable

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0-dev - very fast C++ library

Accepted rate4site 3.0.0-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: rate4site - detector of conserved amino-acid sites Closes: 811824 Changes: rate4site (3.0.0-3) unstable; urgency=medium . * Team upload. . [ Tatiana Malygina ] * Add simple testsuite * cme fix

Accepted libzerg-perl 1.0.4-5 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libzerg-perl - fast perl module for parsing the output of NCBI BLAST programs Changes: libzerg-perl (1.0.4-5) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * add autopkgtest-pkg-per

Accepted libzerg 1.0.7-7 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: libzerg0 - C library for lexically scanning the output of NCBI BLAST program libzerg0-dbg - debugging symbols for libzerg libzerg0-dev - development libraries and header files for lib

Accepted librostlab-blast 1.0.1-6 (source all amd64) into unstable

: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0-dev - very fast

Accepted disulfinder 1.2.11-6 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: disulfinder - cysteines disulfide bonding state and connectivity predictor disulfinder-data - data files for predictor of disulfide bonds in proteins Closes: 811876 Changes: disulfind

Accepted pdb2pqr 2.1.1+dfsg-2 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: pdb2pqr- Preparation of protein structures for electrostatics calculations pdb2pqr-doc - example files accompanying pdb2pqr Changes: pdb2pqr (2.1.1+dfsg-2) unstable; urgency=medium . [ Tatiana Malygina

Accepted conservation-code 20110309.0-5 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: conservation-code - protein sequence conservation scoring tool Changes: conservation-code (20110309.0-5) unstable; urgency=medium . * Team upload [ Tatiana Malygina ] * add draft

Accepted librg-blast-parser-perl 0.03-3 (source amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Changes: librg-blast-parser-perl (0.03-3) unstable; urgency=medium . * Team upload. * add hardening *

Accepted proftmb 1.1.12-4 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: proftmb- per-residue prediction of bacterial transmembrane beta barrels proftmb-dbg - debugging symbols for proftmb Changes: proftmb (1.1.12-4) unstable; urgency=medium . [ Tatiana Malygina ] *

Accepted profbval 1.0.22-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: profbval - predictor of flexible/rigid protein residues from sequence Changes: profbval (1.0.22-3) unstable; urgency=medium . * Team upload. * changed citation in debian/upstream/metadata from s

Accepted predictnls 1.0.20-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: predictnls - prediction and analysis of protein nuclear localization signals Changes: predictnls (1.0.20-3) unstable; urgency=medium . [ Tatiana Malygina ] * Team upload. * cme fix dpkg-control

Accepted tm-align 20160521+dfsg-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: tm-align - structural alignment of proteins Changes: tm-align (20160521+dfsg-2) unstable; urgency=medium . * Team upload. * fix typo in package's description in d/control * add example gzi

Accepted dssp 2.2.1-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: dssp - protein secondary structure assignment based on 3D structure dssp-dbg - debugging symbols for dssp Changes: dssp (2.2.1-3) unstable; urgency=medium . * Team upload. [ Tatiana Malygina ] *

Accepted concavity 0.1+dfsg.1-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Tatiana Malygina <merlett...@gmail.com> Description: concavity - predictor of protein ligand binding sites from structure and cons Closes: 822382 Changes: concavity (0.1+dfsg.1-1) unstable; urgency=medium . * Team upload. * Remove ply.* files. Clo