Accepted kmer 0~20150903+r2013-3 (source amd64 all) into unstable, unstable

Packaging Team Changed-By: Afif Elghraoui Description: atac - genome assembly-to-assembly comparison kmer - suite of tools for DNA sequence analysis leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA sequence analysis (development

Accepted python-intervaltree-bio 1.0.1-1 (source all) into unstable, unstable

Packaging Team Changed-By: Afif Elghraoui Description: python-intervaltree-bio - Interval tree convenience classes for genomic data -- Python 2 li python3-intervaltree-bio - Interval tree convenience classes for genomic data -- Python 3 li Closes: 807803 Changes: python-intervaltree-bio (1.0.1-1

Accepted gridengine 8.1.9+dfsg-4 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-4 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource

Accepted falcon 1.8.4-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 02 Dec 2016 00:17:31 -0800 Source: falcon Binary: falcon Architecture: source Version: 1.8.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: falcon

Accepted python-cobra 0.5.6-1 (source) into unstable

-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.5.6-1

Accepted kmer-tools 0~20150903+r2013-2 (source all amd64) into unstable

Packaging Team Changed-By: Afif Elghraoui Description: kmer - suite of tools for DNA sequence analysis leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA sequence analysis (development lib) libmeryl-dev - in- and out-of-core kmer counting

Accepted falcon 1.8.3-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 26 Nov 2016 21:34:34 -0800 Source: falcon Binary: falcon Architecture: source Version: 1.8.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: falcon

Accepted smrtanalysis 0~20161126 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 26 Nov 2016 20:35:40 -0800 Source: smrtanalysis Binary: smrtanalysis smrtanalysis-dev Architecture: source Version: 0~20161126 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif

Accepted gridengine 8.1.9+dfsg-3 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-3 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource

Accepted ori 0.8.1+ds1-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 22 Nov 2016 22:37:01 -0800 Source: ori Binary: ori Architecture: source Version: 0.8.1+ds1-2 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui Changed-By: Afif Elghraoui Description: ori- peer-to

Accepted falcon 1.8.2-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 13 Nov 2016 23:28:24 -0800 Source: falcon Binary: falcon falconkit Architecture: source Version: 1.8.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted python-cobra 0.5.4-1 (source) into unstable

-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.5.4-1

Accepted falcon 1.7.5-1 (source amd64 all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 23 Oct 2016 04:33:12 -0700 Source: falcon Binary: falcon falconkit Architecture: source amd64 all Version: 1.7.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted sprai 0.9.9.21+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 07 Nov 2016 21:02:54 -0800 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.21+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted pbbam 0.7.0-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 30 Oct 2016 14:31:49 -0700 Source: pbbam Binary: pbbamtools libpbbam libpbbam-dev Architecture: source Version: 0.7.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted dascrubber 0~20160601-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 20 Oct 2016 01:13:30 -0700 Source: dascrubber Binary: dascrubber Architecture: source amd64 Version: 0~20160601-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted sniffles 1.0.1+ds-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 24 Oct 2016 23:07:31 -0700 Source: sniffles Binary: sniffles Architecture: source Version: 1.0.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted pbdagcon 0~20160325+ds-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 23 Oct 2016 19:43:31 -0700 Source: pbdagcon Binary: pbdagcon Architecture: source Version: 0~20160325+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted blasr 5.3-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 23 Oct 2016 18:21:55 -0700 Source: blasr Binary: blasr Architecture: source Version: 5.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: blasr

Accepted pbseqlib 0~20160705-1 (source) into unstable

Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: libblasr - tools for aligning PacBio reads to target sequences libblasr-dev - tools for aligning PacBio reads to target sequences (development libpbdata - tools for handling PacBio sequences libpbdata-dev

Accepted pbbam 0.5.0-3 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 23 Oct 2016 14:07:27 -0700 Source: pbbam Binary: pbbamtools libpbbam libpbbam-dev Architecture: source Version: 0.5.0-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted python-cobra 0.5.2-1 (source) into unstable

-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.5.2-1

Accepted circlator 1.4.0-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 21 Oct 2016 23:30:42 -0700 Source: circlator Binary: circlator Architecture: source Version: 1.4.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted fast5 0.5.8-1 (source all amd64) into unstable, unstable

: Afif Elghraoui Description: libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Changes: fast5 (0.5.8-1) unstable

Accepted sniffles 1.0.0+ds-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 17 Oct 2016 01:39:00 -0700 Source: sniffles Binary: sniffles Architecture: source Version: 1.0.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted dazzdb 1.0+20160930-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 12 Oct 2016 01:36:56 -0700 Source: dazzdb Binary: dazzdb Architecture: source Version: 1.0+20160930-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted daligner 1.0+20160927-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 11 Oct 2016 21:12:16 -0700 Source: daligner Binary: daligner Architecture: source Version: 1.0+20160927-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted mhap 2.1.1+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 09 Oct 2016 11:39:51 -0700 Source: mhap Binary: mhap Architecture: source Version: 2.1.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: mhap

Accepted python-pbcore 1.2.10+dfsg-1 (source) into unstable

: Afif Elghraoui Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Closes: 839346 Changes: python-pbcore (1.2.10+dfsg-1) unstable; urgency=medium . * Imported Upstream version 1.2.10

Accepted gridengine 8.1.9+dfsg-2 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2 Distribution: unstable Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource

Accepted poretools 0.6.0+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 04 Sep 2016 17:04:55 -0700 Source: poretools Binary: poretools Architecture: source Version: 0.6.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted gridengine 8.1.9+dfsg-2~exp5 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp5 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed

Accepted gridengine 8.1.9+dfsg-2~exp4 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp4 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed

Accepted gridengine 8.1.9+dfsg-2~exp3 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp3 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed

Accepted gridengine 8.1.9+dfsg-2~exp2 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp2 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed

Accepted gridengine 8.1.9+dfsg-2~exp1 (source) into experimental

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-2~exp1 Distribution: experimental Urgency: low Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed

Accepted circlator 1.3.0-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 15 Aug 2016 23:31:57 -0700 Source: circlator Binary: circlator Architecture: source Version: 1.3.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.19+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 13 Aug 2016 23:41:00 -0700 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.19+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted nanopolish 0.5.0-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 12 Aug 2016 00:05:16 -0700 Source: nanopolish Binary: nanopolish Architecture: source Version: 0.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted fast5 0.5.6-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 11 Aug 2016 23:09:17 -0700 Source: fast5 Binary: libfast5-dev Architecture: source Version: 0.5.6-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted pbdagcon 0~20151114+git1d12e13+ds-3 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 04 Aug 2016 00:42:55 -0700 Source: pbdagcon Binary: pbdagcon Architecture: source Version: 0~20151114+git1d12e13+ds-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted consensuscore2 0.13.0+20160719-1 (source) into unstable

: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: libconsensuscore2-dev - generate consensus sequences for PacBio data -- development files python-consensuscore2 - generate consensus sequences for PacBio data -- Python 2 python3-consensuscore2 - generate consensus sequences for

Accepted python-pysam 0.9.1.4+ds-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format

Accepted sga 0.10.14-3 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 23 Jul 2016 00:17:45 -0700 Source: sga Binary: sga Architecture: source Version: 0.10.14-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: sga- de

Accepted pbbam 0.5.0-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 17 Jul 2016 23:29:34 -0700 Source: pbbam Binary: pbbamtools libpbbam libpbbam-dev Architecture: source Version: 0.5.0-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted python-cobra 0.4.2~b1-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.4.2~b1-1

Accepted consensuscore 1.0.2-2 (source) into unstable

Packaging Team Changed-By: Afif Elghraoui Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 2 python3-pbconsensuscore - algorithms for PacBio multiple sequence

Accepted kineticstools 0.5.2+dfsg-2 (source) into unstable

Team Changed-By: Afif Elghraoui Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python-kineticstools - detection of DNA modifications (Python 2 library) Closes: 831218 Changes: kineticstools (0.5.2+dfsg-2) unstable

Accepted pbgenomicconsensus 2.0.0+20160420-2 (source) into unstable

Team Changed-By: Afif Elghraoui Description: pbgenomicconsensus - Pacific Biosciences variant and consensus caller python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2) Closes: 831220 Changes: pbgenomicconsensus (2.0.0+20160420-2) unstable; urgency=low

Accepted mhap 2.1+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 13 Jul 2016 22:38:44 -0700 Source: mhap Binary: mhap Architecture: source Version: 2.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: mhap

Accepted mhap 2.0+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 13 Jul 2016 01:04:35 -0700 Source: mhap Binary: mhap Architecture: source Version: 2.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: mhap

Accepted gridengine 8.1.9+dfsg-1 (source) into unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source Version: 8.1.9+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource

Accepted python-avro 1.8.1+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 09 Jul 2016 14:21:51 -0700 Source: python-avro Binary: python-avro python3-avro Architecture: source Version: 1.8.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif

Accepted pbgenomicconsensus 2.0.0+20160420-1 (source) into unstable

Team Changed-By: Afif Elghraoui Description: pbgenomicconsensus - Pacific Biosciences variant and consensus caller python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2) Closes: 830358 Changes: pbgenomicconsensus (2.0.0+20160420-1) unstable; urgency=medium

Accepted pbbam 0.5.0-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 05 Jul 2016 03:25:49 -0700 Source: pbbam Binary: pbbamtools libpbbam libpbbam-dev Architecture: source amd64 Version: 0.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif

Accepted consensuscore2 0.12.0-1 (source amd64) into unstable, unstable

: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: libconsensuscore2-dev - generate consensus sequences for PacBio data -- development files python-consensuscore2 - generate consensus sequences for PacBio data -- Python 2 python3-consensuscore2 - generate consensus sequences for

Accepted consensuscore 1.0.2-1 (source amd64) into unstable, unstable

Med Packaging Team Changed-By: Afif Elghraoui Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 2 python3-pbconsensuscore - algorithms for PacBio multiple

Accepted kineticstools 0.5.2+dfsg-1 (source) into unstable

Team Changed-By: Afif Elghraoui Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python-kineticstools - detection of DNA modifications (Python 2 library) Changes: kineticstools (0.5.2+dfsg-1) unstable; urgency=medium

Accepted gridengine 8.1.8+dfsg-7 (source amd64 all) into unstable, unstable

-drmaa-dev libdrmaa1.0-ruby Architecture: source amd64 all Version: 8.1.8+dfsg-7 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common

Accepted adduser 3.115 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 26 Jun 2016 14:32:23 -0700 Source: adduser Binary: adduser Architecture: source Version: 3.115 Distribution: unstable Urgency: medium Maintainer: Debian Adduser Developers Changed-By: Afif Elghraoui Description: adduser

Accepted falconkit 0.7-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 22 Jun 2016 07:12:56 -0700 Source: falconkit Binary: falconkit Architecture: source Version: 0.7-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.18+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 22 Jun 2016 05:50:23 -0700 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.18+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted python-pysam 0.9.1+ds-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes

Accepted sniffles 0.0.1+ds-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 18 Jun 2016 13:38:07 -0700 Source: sniffles Binary: sniffles Architecture: source amd64 Version: 0.0.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.17+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 09 Jun 2016 06:08:09 -0700 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.17+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.16+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 01 Jun 2016 23:13:26 -0700 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.16+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted gridengine 8.1.8+dfsg-6 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource management

Accepted pbh5tools 0.8.0+dfsg-5 (source all amd64) into unstable, unstable

Team Changed-By: Afif Elghraoui Description: pbh5tools - tools for manipulating Pacific Biosciences HDF5 files python-pbh5tools - tools for manipulating Pacific Biosciences HDF5 files -- Python 2 python-pbh5tools-doc - tools for manipulating HDF5 files produced by Pacific Biosciences

Accepted python-et-xmlfile 1.0.1-2 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 Apr 2016 18:35:00 -0700 Source: python-et-xmlfile Binary: python-et-xmlfile python3-et-xmlfile Architecture: source all Version: 1.0.1-2 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui Changed-By: Afif

Accepted circlator 1.2.1-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 30 Apr 2016 01:35:58 -0700 Source: circlator Binary: circlator Architecture: source Version: 1.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.14+dfsg-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 Apr 2016 19:42:24 -0700 Source: sprai Binary: sprai Architecture: source Version: 0.9.9.14+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted sprai 0.9.9.13+dfsg-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 15 Apr 2016 01:21:05 -0700 Source: sprai Binary: sprai Architecture: source amd64 Version: 0.9.9.13+dfsg-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted python-et-xmlfile 1.0.1-1 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 Apr 2016 00:44:27 -0700 Source: python-et-xmlfile Binary: python-python-et-xmlfile python3-python-et-xmlfile Architecture: source all Version: 1.0.1-1 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui

Accepted bcftools 1.3.1-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 25 Apr 2016 22:24:50 -0700 Source: bcftools Binary: bcftools Architecture: source Version: 1.3.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted python-pbcommand 0.3.22-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 24 Apr 2016 11:31:01 -0700 Source: python-pbcommand Binary: python-pbcommand Architecture: source Version: 0.3.22-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted python-pymummer 0.7.1-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 23 Apr 2016 20:25:13 -0700 Source: python-pymummer Binary: python3-pymummer Architecture: source Version: 0.7.1-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted python-pbcommand 0.3.22-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 23 Apr 2016 20:08:10 -0700 Source: python-pbcommand Binary: python-pbcommand Architecture: source Version: 0.3.22-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted smrtanalysis 0~20160416 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 16 Apr 2016 19:21:02 -0700 Source: smrtanalysis Binary: smrtanalysis smrtanalysis-dev Architecture: source all Version: 0~20160416 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif

Accepted pyconfigure 0.2.3-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 20 Apr 2016 22:04:39 -0700 Source: pyconfigure Binary: pyconfigure Architecture: source Version: 0.2.3-1 Distribution: unstable Urgency: medium Maintainer: Afif Elghraoui Changed-By: Afif Elghraoui Description: pyconfigure

Accepted python-pbcore 1.2.9+dfsg-1 (source) into unstable

: Afif Elghraoui Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Changes: python-pbcore (1.2.9+dfsg-1) unstable; urgency=medium . * Imported Upstream version 1.2.9+dfsg * Refresh

Accepted gridengine 8.1.8+dfsg-5 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource management

Accepted gridengine 8.1.8+dfsg-4 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource management

Accepted python-avro 1.8.0+dfsg-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 07 Apr 2016 22:38:55 -0700 Source: python-avro Binary: python-avro python3-avro Architecture: source Version: 1.8.0+dfsg-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui

Accepted bcftools 1.3-3 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 31 Mar 2016 00:57:18 -0700 Source: bcftools Binary: bcftools Architecture: source Version: 1.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: bcftools

Accepted sbmltoolbox 4.1.0-3 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 26 Mar 2016 12:36:34 -0700 Source: sbmltoolbox Binary: sbmltoolbox Architecture: source Version: 4.1.0-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted artemis 16.0.0+dfsg-5 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 26 Mar 2016 12:26:38 -0700 Source: artemis Binary: artemis Architecture: source Version: 16.0.0+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted python-cobra 0.4.1-1 (source) into unstable

-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.4.1-1

Accepted circlator 1.2.0-1 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 20 Mar 2016 00:04:31 -0700 Source: circlator Binary: circlator Architecture: source all Version: 1.2.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

Accepted gridengine 8.1.8+dfsg-3 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource management

Accepted gridengine 8.1.8+dfsg-2 (source) into unstable

libdrmaa1.0-ruby Architecture: source Version: 8.1.8+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource management

Accepted gridengine 8.1.8+dfsg-1 (source amd64 all) into experimental, experimental

libdrmaa1.0-ruby Architecture: source amd64 all Version: 8.1.8+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Grid Engine Maintainers Changed-By: Afif Elghraoui Description: gridengine-client - Utilities for Grid Engine queue management gridengine-common - Distributed resource

Accepted pbsuite 15.8.24+dfsg-1 (source all) into unstable, unstable

Packaging Team Changed-By: Afif Elghraoui Description: pbhoney- genomic structural variation discovery pbjelly- genome assembly upgrading tool pbsuite- software for Pacific Biosciences sequencing data python-pbbanana - additional utilities for the pbsuite python-pbsuite-utils

Accepted kineticstools 0.5.1+20150828+git3aa3d96+dfsg-2 (source all amd64) into unstable, unstable

Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python-kineticstools - detection of DNA modifications (Python 2 library) Changes: kineticstools (0.5.1

Accepted python-pbcore 1.2.7+dfsg-2 (source) into unstable

: Afif Elghraoui Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Changes: python-pbcore (1.2.7+dfsg-2) unstable; urgency=medium . * Fix compatibility with pysam 0.9.0 * Bump

Accepted python-pysam 0.9.0+ds-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Closes

Accepted python-cobra 0.4.0+0-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.4.0+0-1

Accepted pyconfigure 0.2.2-1 (source all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 19 Dec 2015 14:50:04 -0800 Source: pyconfigure Binary: pyconfigure Architecture: source all Version: 0.2.2-1 Distribution: unstable Urgency: low Maintainer: Afif Elghraoui Changed-By: Afif Elghraoui Description: pyconfigure

Accepted bcftools 1.3-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 21 Feb 2016 16:35:44 -0800 Source: bcftools Binary: bcftools Architecture: source Version: 1.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description: bcftools

Accepted python-cobra 0.4.0b7-1 (source) into unstable

Changed-By: Afif Elghraoui Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks (Python 3) Changes: python-cobra (0.4.0b7-1

Accepted pbbarcode 0.8.0-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 20 Feb 2016 01:42:05 -0800 Source: pbbarcode Binary: pbbarcode Architecture: source Version: 0.8.0-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Afif Elghraoui Description

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