Accepted emboss 6.3.1-6 (source all amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss - the european molecular biology open software suite emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-lib - EMBOSS Libraries

Accepted embassy-domalign 0.1.0+20100721-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Changes: embassy-domalign (0.1.0+20100721-2) unstable; urgency=low . * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions

Accepted embassy-domainatrix 0.1.0+20100721-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domainatrix - Extra EMBOSS commands to handle domain classification file Changes: embassy-domainatrix (0.1.0+20100721-2) unstable; urgency=low . * Built on emboss-lib 6.3.1-6, pre-emptively

Accepted embassy-domsearch 0.1.0++20100721-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domsearch - Extra EMBOSS commands to search for protein domains Changes: embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low . * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions

Accepted embassy-phylip 3.69+20100721-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-phylip - EMBOSS conversions of the programs in the phylip package Changes: embassy-phylip (3.69+20100721-2) unstable; urgency=low . * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions lower

Accepted emboss 6.3.1-4 (source all)

Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package

Accepted embassy-domainatrix 0.1.0+20100721-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domainatrix - Extra EMBOSS commands to handle domain classification file Closes: 591130 Changes: embassy-domainatrix (0.1.0+20100721-1) unstable; urgency=low . * New upstream release in which

Accepted embassy-domalign 0.1.0+20100721-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Closes: 591116 Changes: embassy-domalign (0.1.0+20100721-1) unstable; urgency=low . * New upstream release in which the version number

Accepted embassy-domsearch 0.1.0++20100721-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domsearch - Extra EMBOSS commands to search for protein domains Closes: 591121 Changes: embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low . * New upstream release in which the version number

Accepted embassy-phylip 3.69+20100721-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-phylip - EMBOSS conversions of the programs in the phylip package Changes: embassy-phylip (3.69+20100721-1) unstable; urgency=low . * New upstream release in which the version number was unchanged

Accepted emboss 6.3.1-5 (source all)

Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package jemboss

Accepted seaview 1:4.2.6-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Changes: seaview (1:4.2.6-1) unstable; urgency=low . * New upstream version. * Incremented Standards-Version to reflect conformance with Policy 3.9.1

Accepted libgo-perl 0.13-1 (source all)

Changed-By: Charles Plessy ple...@debian.org Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.13-1) unstable; urgency=low . * New upstream version. * Conformance with Policy 3.9.1: - Refer to the local copy of the GPL version 1 in debian

Accepted emboss 6.3.1-1 (source all)

Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package

Accepted emboss 6.3.1-2 (source all)

Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package jemboss

Accepted staden-io-lib 1.12.4-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for maniuplating DNA

Accepted emboss 6.3.1-3 (source all)

Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package jemboss

Accepted picard-tools 1.27-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.27-1) unstable; urgency=low . * New upstream release

Accepted probcons 1.12-7 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: probcons - PROBabilistic CONSistency-based multiple sequence alignment probcons-extra - Extra programs from the probcons package Closes: 607729 608710 Changes: probcons (1.12-7) unstable; urgency=low . * Use dh

Accepted bwa 0.5.9~rc-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.5.9~rc-1) experimental; urgency=low . * New usptream release candidate. Checksums-Sha1: 8ad35e938c949086f19bdea7bd04ad09e44f7156 1915 bwa_0.5.9~rc-1.dsc

Accepted mule 2.0.1-2 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libmule-java-2.0 - Mule Enterprise Service Bus Java libraries Closes: 583606 Changes: mule (2.0.1-2) unstable; urgency=low . * Team upload. * Added missing build dependencies on Spring, Quartz and OGNL libraries

Accepted eucalyptus 1.6.2-2 (source amd64)

-2 Distribution: unstable Urgency: low Maintainer: Debian Eucalyptus Maintainers pkg-eucalyptus-maintain...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: eucalyptus-cc - Elastic Utility Computing Architecture - Cluster controller eucalyptus-cloud - Elastic

Accepted libbio-graphics-perl 2.11-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.11-1) unstable; urgency=low . * New upstream release. * Conformance with Policy 3.9.0: - Use Breaks instead

Accepted samtools 0.1.8-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.8-1) unstable; urgency=low . * New upstream release

Accepted libbio-samtools-perl 1.20-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.20-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version to reflect

Accepted samtools 0.1.10-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.10-1) unstable; urgency=low . * New upstream release

Accepted samtools 0.1.12a-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.12a-1) unstable; urgency=low . * New upstream release

Accepted seaview 1:4.2.9-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Closes: 601244 Changes: seaview (1:4.2.9-1) unstable; urgency=low . * New upstream version (Closes: #601244). Checksums-Sha1

Accepted bwa 0.5.8c-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Closes: 601568 Changes: bwa (0.5.8c-1) unstable; urgency=low . * Bug fix release, reverting the scoring system back to the one used in 0.5.7. 0.5.8a/b may produce a CIGAR like 10M2I10M4D2M which should

Accepted imagej 1.44i-1 (source all)

-By: Charles Plessy ple...@debian.org Description: imagej - Image processing program inspired by NIH Image for the Macintosh Closes: 600997 601020 Changes: imagej (1.44i-1) unstable; urgency=low . * Team upload. * New upstream release (Closes: #601020). - Solves a bug

Accepted samtools 0.1.9-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.9-1) unstable; urgency=low . * New upstream release

Accepted bwa 0.5.9-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.5.9-1) unstable; urgency=low . * New usptream release - Upstream moved to GitHub (debian/upstream-metadata.yaml). - Checked copyright; one file was removed (debian/copyright

Accepted clustalw 2.1+lgpl-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: clustalw - global multiple nucleotide or peptide sequence alignment Changes: clustalw (2.1+lgpl-1) unstable; urgency=low . * New upstream archive, that makes clear the relicensing to LGPL-3+. - Mangled debian version name

Accepted clustalw 2.1+lgpl-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: clustalw - global multiple nucleotide or peptide sequence alignment Changes: clustalw (2.1+lgpl-2) unstable; urgency=low . * Removed obsolete comment in debian/copyright. Checksums-Sha1: 92d20055730e1a168f835f19bee182fe393f1065

Accepted r-cran-rocr 1.0-4-1 (source all)

Changed-By: Charles Plessy ple...@debian.org Description: r-cran-rocr - GNU R package to prepare and display ROC curves Changes: r-cran-rocr (1.0-4-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version (debian/control) to reflect compliance with Policy

Accepted libbio-graphics-perl 2.00-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.00-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version to reflect conformance

Accepted libbio-samtools-perl 1.10-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.10-1) unstable; urgency=low . * New Upstream version. * Incremented Standards-Version to reflect

Accepted wss4j 1.5.8+svntag-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Thu, 11 Feb 2010 19:30:49 +0900 Source: wss4j Binary: libwss4j-java Architecture: source all Version: 1.5.8+svntag-1 Distribution: unstable Urgency: low Maintainer: Chris Grzegorczyk g...@eucalyptus.com Changed-By: Charles Plessy ple

Accepted euca2ools 1.1-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Sun, 17 Jan 2010 21:36:04 +0900 Source: euca2ools Binary: euca2ools Architecture: source all Version: 1.1-1 Distribution: unstable Urgency: low Maintainer: Chris Grzegorczyk g...@eucalyptus.com Changed-By: Charles Plessy ple

Accepted staden-io-lib 1.12.2-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for maniuplating DNA

Accepted velvet 0.7.56~nozlibcopy-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: velvet - Nucleic acid sequence assembler for very short reads velvet-example - Example data for the Velvet sequence assembler Closes: 561433 Changes: velvet (0.7.56~nozlibcopy-1) unstable; urgency=low

Accepted treeviewx 0.5.1-7 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: treeviewx - Displays and prints phylogenetic trees Closes: 567238 Changes: treeviewx (0.5.1-7) unstable; urgency=low . * Refreshed debian/copyright according to latest developments of the machine-readable format. * Collected

Accepted clustalx 2.0.12-2 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.0.12-2) unstable; urgency=low . * Remove the moc_* files before building, to allow the use of later versions of Qt (debian/rules

Accepted emboss 6.2.0-2 (source all amd64)

: unstable Urgency: low Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss - the european molecular biology open software suite emboss-data - data files for the EMBOSS package emboss-doc

Accepted embassy-phylip 3.69-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-phylip - EMBOSS conversions of the programs in the phylip package Changes: embassy-phylip (3.69-1) unstable; urgency=low . * New upstream release. * debian/control: - Corrected Vcs-Browser URL

Accepted libbio-graphics-perl 2.10-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.10-1) unstable; urgency=low . * New upstream release. * Using Debhelper's ‘dh’ (debian/rules, debian/docs, debian

Accepted embassy-domainatrix 0.1.0+20100115-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domainatrix - Extra EMBOSS commands to handle domain classification file Closes: 587118 Changes: embassy-domainatrix (0.1.0+20100115-1) unstable; urgency=low . * New upstream release in which

Accepted embassy-domalign 0.1.0+20100115-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Closes: 587113 Changes: embassy-domalign (0.1.0+20100115-1) unstable; urgency=low . * New upstream release in which the version number

Accepted embassy-domsearch 0.1.0++20100115-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: embassy-domsearch - Extra EMBOSS commands to search for protein domains Closes: 587119 Changes: embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low . * New upstream release in which the version number

Accepted bwa 0.5.8a-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.5.8a-1) unstable; urgency=low . * New upstream release. * Use the more convenient viewsvn as VCS-Broswer (debian/control). * Incremented Standards-Version to reflect conformance

Accepted libgo-perl 0.12-1 (source all)

Changed-By: Charles Plessy ple...@debian.org Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.12-1) unstable; urgency=low . * New upstream version. * Incremented Standards-Version to reflect conformance with Policy 3.9.0 (debian/control

Accepted bwa 0.5.6-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.5.6-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version to reflect conformance with Policy 3.8.4 (debian/control). Checksums-Sha1

Accepted velvet 0.7.59~nozlibcopy-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: velvet-example - Example data for the Velvet sequence assembler Changes: velvet (0.7.59~nozlibcopy-1) UNRELEASED; urgency=low . * New upstream release . [ Charles Plessy ] * Incremented Standard-Version

Accepted bioperl 1.6.1-2 (source all)

-By: Charles Plessy ple...@debian.org Description: bioperl- Perl tools for computational molecular biology Closes: 562442 Changes: bioperl (1.6.1-2) unstable; urgency=low . * Removed bibliographic information from the long description (debian/control). * Incremented Standards

Accepted bwa 0.5.7-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.5.7-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: 1b420654cab3da7717b721dbca51249b3608fc2c 1266 bwa_0.5.7-1.dsc b5a0d253a4105267a0aeb41d0f40fc4fd8194941 112587 bwa_0.5.7

Accepted euca2ools 1.2-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: euca2ools - managing cloud instances for Eucalyptus Changes: euca2ools (1.2-1) unstable; urgency=low . * New upstream release. * Package maintained in the pkg-eucalyptus Alioth project: - pkg-eucalyptus-maintain

Accepted libbio-graphics-perl 2.01-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.01-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: ad4420bf96a7ccbb62c187c4deaf3085d742463f 1478

Accepted libbio-samtools-perl 1.11-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.11-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted aeskulap 0.2.2b1-6 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: aeskulap - medical image viewer and DICOM network client Closes: 572819 Changes: aeskulap (0.2.2b1-6) UNRELEASED; urgency=low . * Team upload. * Stop installing libtool .la files (debian/rules, Closes: #572819). * Corrected

Accepted phyml 2:20100123-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: phyml - Phylogenetic estimation using Maximum Likelihood Changes: phyml (2:20100123-1) unstable; urgency=low . * New upstream release. . [ Nelson A. de Oliveira ] * Fix watch file. * Increment the epoch number to fix a typo

Accepted mencal 2.3-9 (source all)

-By: Charles Plessy ple...@debian.org Description: mencal - A menstruation calendar Closes: 572505 Changes: mencal (2.3-9) unstable; urgency=low . * Team upload. * Removed Matthew Wilcox from the uploaders list (Closes: #572505). * Added a description to the patches in debian/patches

Accepted r-cran-epitools 1:0.5-5-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-epitools - GNU R Epidemiology Tools for Data and Graphics Changes: r-cran-epitools (1:0.5-5-1) unstable; urgency=low . * New upstream version. * Incremented Standards-Version to reflect conformance with Policy 3.8.4

Accepted libbio-mage-utils-perl 20030502.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-mage-utils-perl - Extra modules for classes in the MAGE package: MAGE Closes: 476202 Changes: libbio-mage-utils-perl (20030502.0-1) unstable; urgency=low . * Initial release (Closes: #476202

Accepted mule 2.0.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libmule-java-2.0 - Mule Enterprise Service Bus Java libraries Closes: 573630 Changes: mule (2.0.1-1) unstable; urgency=low . [ Chris Grzegorczyk ] * Initial release (Closes: #573630). Checksums-Sha1

Accepted emboss 6.2.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-test - test files for the EMBOSS package jemboss- graphical user interface to EMBOSS Changes: emboss (6.2.0-1

Accepted r-cran-xtable 1:1.5-6-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-xtable - GNU R coerce data to LaTeX and HTML tables Closes: 556295 581829 Changes: r-cran-xtable (1:1.5-6-1) unstable; urgency=low . * Team upload. . [ Andreas Tille ] * New upstream version. * Built against R

Accepted r-cran-epibasix 1.1-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-epibasix - GNU R Elementary Epidemiological Functions Changes: r-cran-epibasix (1.1-2) unstable; urgency=low . * Rebuilt against R = 2.10 in order to work with Squeeze's R. * Incremented Standards-Version to reflect

Accepted staden-io-lib 1.12.2-2 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for maniuplating DNA

Accepted vtkedge 0.1.0-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libvtkedge - Library of advanced visualization and data processing techniques libvtkedge-dev - Library of advanced visualization and data processing techniques Changes: vtkedge (0.1.0-2) unstable; urgency=low . * Team

Accepted libbio-samtools-perl 1.19-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.19-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted libbio-mage-perl 20030502.3-2 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-mage-perl - Container module for classes in the MAGE package: MAGE Changes: libbio-mage-perl (20030502.3-2) unstable; urgency=low . [ Charles Plessy] * Updated my email address (debian/control

Accepted libbio-samtools-perl 1.14-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.14-1) unstable; urgency=low . * New upstream release with a new script, bamToGBrowse.pl. * Depend and Build

Accepted seaview 1:4.2.4-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Changes: seaview (1:4.2.4-1) unstable; urgency=low . * New upstream release. * debian/control: - Incremented Standards-Version to reflect conformance

Accepted catools 1.10-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: r-cran-catools - GNU R package providing various utility functions Closes: 577296 Changes: catools (1.10-1) unstable; urgency=low . * Team upload (Closes: #577296). * New upstream version. * Update to Policy 3.8.4

Accepted r-other-bio3d 1.0-8-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-other-bio3d - GNU R package for biological structure analysis Closes: 577386 Changes: r-other-bio3d (1.0-8-1) unstable; urgency=low . * New upstream release (Closes: #577386). * Added a tilde to the R:Depends substvar

Accepted libbio-samtools-perl 1.12-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.12-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted perlprimer 1.1.19-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: perlprimer - Graphical design of primers for PCR perlprimer-doc - Tutorial to perlprimer Changes: perlprimer (1.1.19-1) unstable; urgency=low . * New upstream release: Ensembl compatibility restored again

Accepted r-cran-randomforest 4.5-34-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-randomforest - GNU R package implementing the random forest classificator Changes: r-cran-randomforest (4.5-34-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version (debian

Accepted r-other-bio3d 1.0-7-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-other-bio3d - GNU R package for biological structure analysis Changes: r-other-bio3d (1.0-7-1) UNRELEASED; urgency=low . * New upstream release. * Incremented Standards-Version (debian/control) to reflect compliance

Accepted libbio-graphics-perl 2.02-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.02-1) unstable; urgency=low . * New upstream release (more support for BigWig and BigBed data, and other changes

Accepted perlprimer 1.1.20-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: perlprimer - Graphical design of primers for PCR perlprimer-doc - Tutorial to perlprimer Changes: perlprimer (1.1.20-1) unstable; urgency=low . * New upstream release: - Ensembl compatibility restored again

Accepted clustalx 2.1+lgpl-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-1) unstable; urgency=low . * New upstream archive, that makes clear the relicensing to LGPL-3+. - Mangled debian version

Accepted r-cran-genabel 1.6-5-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-genabel - GNU R package for genome-wide SNP association analysis Closes: 620269 Changes: r-cran-genabel (1.6-5-1) unstable; urgency=low . * New upstream release, buildable with R 2.12 (closes: #620269

Accepted libbio-samtools-perl 1.28-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - read SAM/BAM nucleotide sequence aligment database files Changes: libbio-samtools-perl (1.28-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted libgtextutils 0.6-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libgtextutils-dev - Gordon Text_utils library (development files) libgtextutils0 - Gordon Text_utils library Closes: 613486 Changes: libgtextutils (0.6-1) unstable; urgency=low . * Initial release (Closes

Accepted tabix 0.2.4-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: tabix - generic indexer for TAB-delimited genome position files Changes: tabix (0.2.4-1) unstable; urgency=low . * New upstream release. * Incremented Standards-Version to reflect conformance with Policy 3.9.2 (debian/control

Accepted samtools 0.1.15-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.15-1) unstable; urgency=low . * New upstream release

Accepted tabix 0.2.3-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: tabix - generic indexer for TAB-delimited genome position files Closes: 606446 Changes: tabix (0.2.3-1) unstable; urgency=low . * Initial release (Closes: #606446) Checksums-Sha1: 5d316c14341a615d0c34c396399f5b5c2b3b548a 1882

Accepted catools 1.11-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-catools - GNU R package providing various utility functions Changes: catools (1.11-1) unstable; urgency=low . * Team upload. * New upstream version. * debian/copyright: - corrected GPL-3 long description (not GPL

Accepted libbio-graphics-perl 2.14-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.14-1) unstable; urgency=low . * New upstream release. * Converted debian/copyright to DEP-5 machine-readable format

Accepted samtools 0.1.14-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format samtools - processing sequence alignments in SAM and BAM formats Changes: samtools (0.1.14-1) unstable; urgency=low . * New upstream release

Accepted r-cran-sp 1:0.9-81-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-sp - GNU R classes and methods for spatial data Closes: 628354 Changes: r-cran-sp (1:0.9-81-1) unstable; urgency=low . * Team upload. * New upstream release. Closes: #628354 (caused by a typo in the source). * Using

Accepted catools 1.12-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-catools - GNU R package providing various utility functions Changes: catools (1.12-1) unstable; urgency=low . * New upstream version. * Added myself as Uploader (debian/control). * Incremented Standards-Version

Accepted r-bioc-limma 3.8.2-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-bioc-limma - linear models for microarray data Closes: 628548 Changes: r-bioc-limma (3.8.2-1) unstable; urgency=low . * Initial release (closes: #628548). Checksums-Sha1: 1c36f60237b39f9e493282344bb600106c8ce4aa 1931 r-bioc

Accepted picard-tools 1.46-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.46-1) unstable; urgency=low . * New upstream release. * Depend

Accepted r-bioc-edger 2.2.5-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-bioc-edger - Empirical analysis of digital gene expression data in R Closes: 628882 Changes: r-bioc-edger (2.2.5-1) unstable; urgency=low . * Initial release (Closes: #628882) Checksums-Sha1

Accepted r-cran-vcd 1:1.2-11-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-vcd - GNU R Visualizing Categorical Data Closes: 629319 Changes: r-cran-vcd (1:1.2-11-1) unstable; urgency=low . * Team upload. * New upstream release. * Build-depend on r-cran-mass (debian/control, Closes: #629319

Accepted bedtools 2.12.0-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: bedtools - suite of utilities for comparing genomic features Closes: 629597 Changes: bedtools (2.12.0-1) unstable; urgency=low . * Initial release (Closes: #629597) Checksums-Sha1: 3fae9bb7385c3956a0ef2e6f10e0f61d58f460d9 1924

Accepted seaview 1:4.2.12-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Changes: seaview (1:4.2.12-1) unstable; urgency=low . * New upstream versions. * Using Debhelper compatibility level 8 (debian/control, debian/compat

Accepted bioperl 1.6.901-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bioperl- Perl tools for computational molecular biology libbio-perl-perl - BioPerl core perl modules Changes: bioperl (1.6.901-1) unstable; urgency=low . * New upstream release. * Point debian/watch

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