Accepted logol 1.6.5-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.5-1) unstable; urgency=low . * New upstream release (memory footprint optimisation in some

Accepted logol 1.6.4-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.4-1) unstable; urgency=low . * New upstream release fixing bugs Checksums-Sha1

Accepted ruby-cassiopee 0.1.12-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ruby-cassiopee - Library to index strings and to search with exact or approximate Changes: ruby-cassiopee (0.1.12-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted logol 1.6.3-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.3-1) unstable; urgency=low . * New upstream release fixing important bugs on distance search

Accepted ruby-cassiopee 0.1.11-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ruby-cassiopee - Library to index strings and to search with exact or approximate Changes: ruby-cassiopee (0.1.11-1) unstable; urgency=low . [ Olivier Sallou ] * New upstream release fixing important bugs

Accepted biojava-live 1:1.7.1-3 (source all)

: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava-java - Java API to biological data and applications (default version) libbiojava-java-demos - Example programs for BioJava libbiojava-java-doc - [Biology

Accepted biojava3-live 3.0.5-4 (source all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API to biological

Accepted opennebula-context 4.2.0-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Closes: 721956 Changes: opennebula-context (4.2.0-2) unstable; urgency=low . * Remove network update at install (Closes: #721956) Checksums-Sha1

Accepted biomaj 1.2.2-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 721773 Changes: biomaj (1.2.2-2) unstable; urgency=low . * d/postinst: Fix install

Accepted opennebula-context 4.2.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Closes: 720299 Changes: opennebula-context (4.2.0-1) unstable; urgency=low . * Initial release (Closes: #720299) Checksums-Sha1

Accepted biomaj 1.2.2-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Changes: biomaj (1.2.2-1) unstable; urgency=low . * New upstream release with minor fixes d

Accepted logol 1.6.2-3 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Closes: 719030 Changes: logol (1.6.2-3) unstable; urgency=low . * Fix swi-prolog compilation (Closes: #719030

Accepted soapdenovo2 240+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: soapdenovo2 - short-read assembly method to build de novo draft assembly Changes: soapdenovo2 (240+dfsg-1) unstable; urgency=low . * New upstream release Checksums-Sha1: c55acabdf9c65343eb933f8f111b192eddba0f6b 2105

Accepted mobyle 1.5.1+dfsg-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.1+dfsg-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted mobyle-programs 5.1.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle-programs - Program descriptions for the mobyle portal Changes: mobyle-programs (5.1.1-1) unstable; urgency=low . * New upstream release Checksums-Sha1: fe8be65148199d07826e67f917106c208ada23a5 2061 mobyle

Accepted libbio-graphics-perl 2.37-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Closes: 718147 Changes: libbio-graphics-perl (2.37-1) unstable; urgency=low . * New upstream release 2.37 * Remove failing tests (Closes: #718147

Accepted picard-tools 1.95-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.95-1) unstable; urgency=low . * New upstream release * Fix man

Accepted igv 2.3.12+dfsg-1 (source all)

-By: Olivier Sallou osal...@debian.org Description: igv- Integrative Genomics Viewer Changes: igv (2.3.12+dfsg-1) unstable; urgency=low . * New upstream release Checksums-Sha1: d8da4e5ff2eca6565c78c547e5e4bd527d4b980b 2550 igv_2.3.12+dfsg-1.dsc

Accepted picard-tools 1.90-3 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Closes: 705681 Changes: picard-tools (1.90-3) unstable; urgency=low . * Add possibility

Accepted figtree 1.4-2 (source all)

-By: Olivier Sallou osal...@debian.org Description: figtree- graphical phylogenetic tree viewer Closes: 715225 Changes: figtree (1.4-2) unstable; urgency=low . * Force set of JAVA_HOME in debian/rules (Closes: #715225). Checksums-Sha1: 46e558bcd8bc27c62641afa435c92e41a5f0dcb2 1667

Accepted squizz 0.99b+dfsg-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsquizz - Conversion libs used by squizz genetic sequence converter libsquizz-dev - development tools for squizz genetic sequence converter squizz - Converter for genetic sequences and alignments Closes

Accepted clustalo 1.2.0-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation Closes: 706000 Changes: clustalo

Accepted biomaj 1.2.1-3 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 712328 Changes: biomaj (1.2.1-3) unstable; urgency=low . * Add patch to manage ant properties

Accepted biojava3-live 3.0.5-3 (source all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API to biological

Accepted fastqc 0.10.1+dfsg-2 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: fastqc - quality control for high throughput sequence data Closes: 697604 Changes: fastqc (0.10.1+dfsg-2) unstable; urgency=low . * Add patch to fix Templates and Contaminants loading in non interactive mode (Closes: #697604

Accepted igv 2.3.2+dfsg-2 (source all)

-By: Olivier Sallou osal...@debian.org Description: igv- Integrative Genomics Viewer Changes: igv (2.3.2+dfsg-2) unstable; urgency=low . * Move to unstable. Checksums-Sha1: ca2139f0b28e2ff9e6f63e58a6726078877a6a11 2566 igv_2.3.2+dfsg-2.dsc 48ff942250ab2061b57281c2ffc9699504f13081

Accepted picard-tools 1.90-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.90-2) unstable; urgency=low . * Load in unstable, all deps

Accepted ncbi-blast+ 2.2.28-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.28-1) unstable; urgency=low . * New upstream release

Accepted mobyle 1.5.0+dfsg-2 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Closes: 669884 Changes: mobyle (1.5.0+dfsg-2) unstable; urgency=low . * Transition to Apache 2.4

Accepted gbrowse 2.54+dfsg-2 (source all amd64)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 669830 Changes: gbrowse (2.54+dfsg-2) unstable; urgency=low . * Transition

Accepted logol 1.6.2-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.2-1) unstable; urgency=low . * New upstream release (bug fixes) Checksums-Sha1

Accepted libgenome-model-tools-music-perl 0.04-1 (source all)

-maintain...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libgenome-model-tools-music-perl - module for finding mutations of significance in cancer Closes: 701470 Changes: libgenome-model-tools-music-perl (0.04-1) unstable; urgency=low . * Initial Release

Accepted circos 0.64-1 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.64-1) unstable; urgency

Accepted biomaj 1.2.1-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 708454 Changes: biomaj (1.2.1-2) unstable; urgency=low . * Add patch to match libjgoodies-form

Accepted picard-tools 1.87-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.87-1) experimental; urgency=low . * New upstream release

Accepted cofoja 1.0~r139-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libcofoja-java - Java framework for runtime checking Closes: 706419 706422 Changes: cofoja (1.0~r139-2) unstable; urgency=low . * debian/control : Fix VCS fields (Closes: #706422) * Fix unmappable characters preventing JDK 7

Accepted picard-tools 1.90-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.90-1) experimental; urgency=low . * New upstream release

Accepted igv 2.3.2+dfsg-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: igv- Integrative Genomics Viewer Closes: 703721 Changes: igv (2.3.2+dfsg-1) experimental; urgency=low . * New upstream release * Use libjide-oss-java from Debian (Closes: #703721). * Use libcofoja-java from Debian Checksums

Accepted libgenome-perl 0.06-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libgenome-perl - pipelines, tools, and data management for genomics Closes: 701467 Changes: libgenome-perl (0.06-1) unstable; urgency=low . * Initial Release (Closes: #701467). Checksums-Sha1

Accepted picard-tools 1.82-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Closes: 705686 Changes: picard-tools (1.82-2) unstable; urgency=low . * Fix classpath

Accepted cofoja 1.0~r139-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libcofoja-java - Java framework for runtime checking Closes: 705128 Changes: cofoja (1.0~r139-1) unstable; urgency=low . * Initial release (Closes: #705128) Checksums-Sha1: b467dc87f08b6c41b76cb5dcdb2223e7f892d275 1990 cofoja_1.0

Accepted libgetopt-complete-perl 0.26-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libgetopt-complete-perl - programmable shell completion for Perl apps Closes: 701455 Changes: libgetopt-complete-perl (0.26-1) unstable; urgency=low . * Initial Release (Closes: #701455). Checksums-Sha1

Accepted libur-perl 0.400-1 (source all)

-By: Olivier Sallou osal...@debian.org Description: libur-perl - object/relation mapper library Closes: 701459 Changes: libur-perl (0.400-1) unstable; urgency=low . * Initial Release (Closes: #701459). Checksums-Sha1: 9abfb1289707c53f36ad0a411ad0bc934b319b5d 2524 libur-perl_0.400-1.dsc

Accepted logol 1.6.1-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.1-1) unstable; urgency=low . * New upstream release (bug fixes) Checksums-Sha1

Accepted soapdenovo2 223+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: soapdenovo2 - short-read assembly method to build de novo draft assembly Closes: 705139 Changes: soapdenovo2 (223+dfsg-1) unstable; urgency=low . * debian/copyright: remove .a files from upstream archive (Closes

Accepted soapdenovo2 223-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: soapdenovo2 - short-read assembly method to build de novo draft assembly Changes: soapdenovo2 (223-2) unstable; urgency=low . * debian/copyright: Update copyright years and content Checksums-Sha1

Accepted mobyle-tutorials 1.5.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle-tutorials - program tutorials for the mobyle portal Closes: 700859 Changes: mobyle-tutorials (1.5.0-1) unstable; urgency=low . * First release (Closes: #700859) Checksums-Sha1

Accepted igv 2.2.7+dfsg-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: igv- Integrative Genomics Viewer Closes: 683538 Changes: igv (2.2.7+dfsg-1) experimental; urgency=low . [ Andreas Tille ] * New upstream version * debian/upstream: Add citation information * debian/control

Accepted libclass-autoloadcan-perl 0.03-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libclass-autoloadcan-perl - module managing conflict between AUTOLOAD, can and inheritance Closes: 701456 Changes: libclass-autoloadcan-perl (0.03-1) unstable; urgency=low . * Initial Release (Closes: #701456

Accepted libtest-fork-perl 0.02-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libtest-fork-perl - module for testing code which forks Closes: 701457 Changes: libtest-fork-perl (0.02-1) unstable; urgency=low . * Initial Release (Closes: #701457). Checksums-Sha1: 86f78374e842c90b08d28a9b7fdf9a2a3377b132

Accepted beast-mcmc 1.7.4-2 (source all amd64)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: beast-mcmc - Bayesian MCMC phylogenetic inference beast-mcmc-doc - Bayesian MCMC phylogenetic inference - documentation beast-mcmc-examples - Bayesian MCMC

Accepted squizz 0.99b+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsquizz - Conversion libs used by squizz genetic sequence converter libsquizz-dev - development tools for squizz genetic sequence converter squizz - Converter for genetic sequences and alignments Changes

Accepted mobyle-programs 5.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle-programs - Program descriptions for the mobyle portal Changes: mobyle-programs (5.1-1) unstable; urgency=low . * New upstream release Checksums-Sha1: baf2355252c0e74cde382b8eaf8a994ad6f0ac25 2060 mobyle-programs_5.1

Accepted mobyle 1.5.0+dfsg-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.0+dfsg-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted logol 1.6.0-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.6.0-1) unstable; urgency=low . * New upstream release with bug fixes Checksums-Sha1

Accepted mobyle-programs 4.0-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle-programs - Program descriptions for the mobyle portal Closes: 668753 Changes: mobyle-programs (4.0-2) unstable; urgency=low . * Remove deploy at install (Closes: #668753). Checksums-Sha1

Accepted picard-tools 1.82-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.82-1) unstable; urgency=low . * New upstream release Checksums

Accepted biojava3-live 3.0.5-2 (source all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API to biological

Accepted libchado-perl 1.23-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Changes: libchado-perl (1.23-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted gbrowse 2.54+dfsg-1 (source all amd64)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Changes: gbrowse (2.54+dfsg-1) unstable; urgency=low . * New upstream release

Accepted libbio-graphics-perl 2.31-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.31-1) unstable; urgency=low . * e5dd93 New upstream release 2.31 Checksums-Sha1

Accepted libbio-graphics-perl 2.32-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Changes: libbio-graphics-perl (2.32-1) unstable; urgency=low . * 63f795 New upstream release 2.32 Checksums-Sha1: 5ffe09e6c3fa80d9fee88373d9f053ae69594e91

Accepted biojava3-live 3.0.5-1 (source all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API to biological

Accepted libvm-ec2-perl 1.20-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libvm-ec2-perl - module providing controls on Amazon EC2 and Eucalyptus Changes: libvm-ec2-perl (1.20-1) unstable; urgency=low . * New upstream release * debian/control: add new dependencies, remove perl depencency (implicit

Accepted picard-tools 1.80-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.80-1) unstable; urgency=low . * New upstream release Checksums

Accepted picard-tools 1.79-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.79-1) unstable; urgency=low . * New upstream release 1.79

Accepted biomaj 1.2.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 690698 Changes: biomaj (1.2.1-1) unstable; urgency=low . * New usptream release * Add

Accepted biomaj-watcher 1.2.1-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 690694 Changes: biomaj-watcher (1.2.1-1) unstable; urgency=low . * New upstream release * Add Japanese debconf translation (Closes: #690694

Accepted libvm-ec2-perl 1.19-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libvm-ec2-perl - module providing controls on Amazon EC2 and Eucalyptus Changes: libvm-ec2-perl (1.19-1) unstable; urgency=low . * New upstream release Checksums-Sha1: e751da76a2a764699c5df7b4d55bb3dab7cc5ebb 2055 libvm-ec2

Accepted libchado-perl 1.22-4 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Closes: 689111 Changes: libchado-perl (1.22-4) unstable; urgency=low . * debian/rules: fix permissions

Accepted picard-tools 1.78-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.78-1) unstable; urgency=low . * New upstream release Checksums

Accepted logol 1.5.0-7 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.5.0-7) experimental; urgency=low . * debian/control: Depends on swi-prolog = 6.2.2-13

Accepted biomaj 1.2.0-10 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Changes: biomaj (1.2.0-10) unstable; urgency=low . * debian/rules, debian/postinst: fix permissions

Accepted biomaj-watcher 1.2.0-11 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 690165 Changes: biomaj-watcher (1.2.0-11) unstable; urgency=low . * debian/setperms.sh: Change owner/rights of global.properties to fix access

Accepted biomaj-watcher 1.2.0-10 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 689812 Changes: biomaj-watcher (1.2.0-10) unstable; urgency=low . * debian/postinst, debian/patches/prevent_jobs_file_move: Prevent file deletion

Accepted ncbi-blast+ 2.2.27-2 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 688661 688684 Changes: ncbi-blast+ (2.2.27-2) unstable; urgency=low

Accepted ncbi-blast+ 2.2.27-3 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 688661 Changes: ncbi-blast+ (2.2.27-3) unstable; urgency=low . * debian

Accepted biomaj 1.2.0-9 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 688433 Changes: biomaj (1.2.0-9) unstable; urgency=low . * debian/patches

Accepted biomaj 1.2.0-8 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 688433 Changes: biomaj (1.2.0-8) unstable; urgency=low . [ Olivier Sallou ] * debian

Accepted libvm-ec2-perl 1.17-2 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libvm-ec2-perl - module providing controls on Amazon EC2 and Eucalyptus Changes: libvm-ec2-perl (1.17-2) unstable; urgency=low . [ Olivier Sallou ] * debian/control: set Perl group as maintainer Add missing Vcs tags

Accepted gbrowse 2.51+dfsg-1 (source all amd64)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 662922 677381 Changes: gbrowse (2.51+dfsg-1) unstable; urgency=low

Accepted ncbi-blast+ 2.2.27-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.27-1) unstable; urgency=low . * New upstream release

Accepted libvm-ec2-perl 1.17-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 7 Sep 2012 12:17:02 +0200 Source: libvm-ec2-perl Binary: libvm-ec2-perl Architecture: source all Version: 1.17-1 Distribution: unstable Urgency: low Maintainer: Olivier Sallou osal...@debian.org Changed-By: Olivier Sallou osal

Accepted picard-tools 1.77-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.77-1) unstable; urgency=low . * New upstream release Checksums

Accepted circos 0.62.1-1 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.62.1-1) unstable

Accepted picard-tools 1.76-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.76-1) unstable; urgency=low . * New upstream release Checksums

Accepted picard-tools 1.75-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Closes: 684172 Changes: picard-tools (1.75-1) unstable; urgency=low . [Olivier Sallou

Accepted mobyle 1.0.7+dfsg-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.0.7+dfsg-1) unstable; urgency=low . [ Olivier Sallou ] * New upstream

Accepted snappy1.0.3-java 1.0.3-rc3~dfsg-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsnappy1.0.3-java - Snappy v1.0.3 for Java, a fast compressor/decompresser Changes: snappy1.0.3-java (1.0.3-rc3~dfsg-2) unstable; urgency=low . * Fix maven pom file artifactid and location Checksums-Sha1

Accepted snappy1.0.3-java 1.0.3-rc3~dfsg-3 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsnappy1.0.3-java - Snappy v1.0.3 for Java, a fast compressor/decompresser Changes: snappy1.0.3-java (1.0.3-rc3~dfsg-3) unstable; urgency=low . * Fix wrong symlink to maven repo Checksums-Sha1

Accepted snappy1.0.3-java 1.0.3-rc3~dfsg-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsnappy1.0.3-java - Snappy v1.0.3 for Java, a fast compressor/decompresser Closes: 686077 Changes: snappy1.0.3-java (1.0.3-rc3~dfsg-1) unstable; urgency=low . * Initial release (Closes: #686077). Checksums

Accepted logol 1.5.0-6 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Closes: 685079 Changes: logol (1.5.0-6) unstable; urgency=low . [ Olivier Sallou ] * debian/control: Fix typo

Accepted biomaj-watcher 1.2.0-9 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 682490 683530 Changes: biomaj-watcher (1.2.0-9) unstable; urgency=low . [ Olivier Sallou ] * modifies ownership/permissions of files from the biomaj

Accepted circos 0.61-3 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Closes: 684977 Changes: circos (0.61-3

Accepted circos 0.61-2 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Closes: 682802 Changes: circos (0.61-2

Accepted logol 1.5.0-5 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern maching tool using Logol language logol-bin - Pattern maching tool using Logol language Closes: 684158 Changes: logol (1.5.0-5) unstable; urgency=low . [ Olivier Sallou] * Transition package to use

Accepted circos-tools 0.16-3 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.16-3) unstable; urgency=low . [ Olivier Sallou ] * Update description to match circos package description * Switch to Standards 3.9.3

Accepted logol 1.5.0-4 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern maching tool using Logol language logol-bin - Pattern maching tool using Logol language Closes: 683647 Changes: logol (1.5.0-4) unstable; urgency=low . * debian/postinst: remove directory permissions

Accepted logol 1.5.0-3 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern maching tool using Logol language logol-bin - Pattern maching tool using Logol language Changes: logol (1.5.0-3) experimental; urgency=low . * Test in experimental with Swi-prolog 6.0.2 to check

Accepted biomaj 1.2.0-7 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 683517 Changes: biomaj (1.2.0-7) unstable; urgency=low . [ Olivier Sallou ] Patch from

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