Accepted libur-perl 0.430-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libur-perl - object/relation mapper library Closes: 711637 Changes: libur-perl (0.430-1) unstable; urgency=medium . [ gregor herrmann ] * Strip trailing slash from metacpan URLs. . [ Olivier Sallou ] * New upstream release 0.430

Accepted gbrowse 2.54+dfsg-3 (source all amd64)

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 752345 Changes: gbrowse (2.54+dfsg-3) unstable; urgency=medium . [ gregor

Accepted biojava3-live 3.0.7+dfsg-2 (source all)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted opennebula-context 4.2.0-3 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Changes: opennebula-context (4.2.0-3) unstable; urgency=low . * Remove lintian warnings , go to standards 3.9.5 Checksums-Sha1

Accepted biomaj-watcher 1.2.2-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 742859 752223 Changes: biomaj-watcher (1.2.2-1) unstable; urgency=medium . * New usptream release: - remove generated GWT files from source (Closes

Accepted ncbi-blast+ 2.2.29-2 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 753190 Changes: ncbi-blast+ (2.2.29-2) unstable; urgency=medium . * d

Accepted soapdenovo 1.05-2 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: soapdenovo - short-read assembly method to build de novo draft assembly Closes: 732281 Changes: soapdenovo (1.05-2) unstable; urgency=low . * soapdenovo is not maintained anymore, please use soapdenovo2 (Closes: #732281

Accepted picard-tools 1.105-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.105-1) unstable; urgency=low . * New upstream release 1.105

Accepted picard-tools 1.113-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.113-1) unstable; urgency=medium . * New upstream release 1.113

Accepted ncbi-blast+ 2.2.29-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.29-1) unstable; urgency=medium . * New upstream release

Accepted fastqc 0.11.2+dfsg-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: fastqc - quality control for high throughput sequence data Changes: fastqc (0.11.2+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: ee9f4e105b9e4b363604e6d85bd682037d512d1a 2155 fastqc_0.11.2+dfsg-1.dsc

Accepted pycaptcha 0.4-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: python-captcha - collection of Python modules implementing CAPTCHAs Changes: pycaptcha (0.4-2) unstable; urgency=low . [ Jakub Wilk ] * Use canonical URIs for Vcs-* fields. . [ Hugo Lefeuvre ] * Use the last version

Accepted cassiopee 1.0.1+dfsg-2 (source amd64 all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted cassiopee 1.0.1+dfsg-3 (source amd64 all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted discosnp 1.2.2-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.2-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 0270aae940eb298fbbd2959f51ebb489e3a28842 1996

Accepted mapsembler2 2.1.6+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.1.6+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 3f7742296f72652491bd9a85cf3226686bb817e0 2050

Accepted opennebula-context 4.8.1-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Changes: opennebula-context (4.8.1-1) unstable; urgency=medium . * New upstream release, fixes on network setup Checksums-Sha1

Accepted biojava3-live 3.0.8+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted discosnp 1.2.3-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.3-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 5fbf7f7a90fb0cbad2586d3fa4ba3a31b3ddbb5a 1992

Accepted mapsembler2 2.2.1+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium . * New upstream release Change of license to AGPL-3 Checksums-Sha1

Accepted fastqc 0.11.2+dfsg-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: fastqc - quality control for high throughput sequence data Closes: 756296 Changes: fastqc (0.11.2+dfsg-2) unstable; urgency=medium . * Fix Configuration dir loading (Closes: #756296). Files are in directroy /etc/fastqc

Accepted prodigal 2.60-1 (source amd64) into unstable, unstable

Changed-By: Olivier Sallou osal...@debian.org Description: prodigal - Microbial (bacterial and archaeal) gene finding program Closes: 756291 Changes: prodigal (2.60-1) unstable; urgency=low . * Initial release (Closes: #756291). Checksums-Sha1: 266afb824147faae924079a7894ae67be40616b2 1927

Accepted discosnp 1.2.1-1 (source amd64)

Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.1-1) unstable; urgency=low . * New upstream release Checksums-Sha1: 7c6cf3ecf32acf0ebfd2248f6993b78904d83cfe 1970 discosnp_1.2.1-1

Accepted mapsembler2 2.1.2+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low . * New upstream release Checksums-Sha1: b19a5b64bc99f2d55b00344e865b49457f358d02 2041 mapsembler2_2.1.2

Accepted cassiopee 1.0+dfsg-1 (source amd64 all)

debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted cassiopee 1.0.1+dfsg-1 (source amd64 all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted logol 1.7.0-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.0-1) unstable; urgency=low . * New upstream release Checksums-Sha1

Accepted biojava3-live 3.1.0+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted mapsembler2 2.2.1+dfsg-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 758648 Changes: mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium . * Fix kissreads file conflict with discoSnp (Closes: #758648). Checksums-Sha1

Accepted mapsembler2 2.2.1+dfsg-3 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 758730 Changes: mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium . [Gilles Filippini p...@debian.org ] * Support hdf5 1.8.13 new packaging layout

Accepted circos 0.66-1 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.66-1) unstable

Accepted circos-tools 0.18-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.18-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 8faac91c230ff29d52be2cbb81240ac55e2fdf36 1965 circos-tools_0.18

Accepted mobyle 1.5.3+dfsg-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.3+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1

Accepted mobyle-programs 5.1.2-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle-programs - Program descriptions for the mobyle portal Changes: mobyle-programs (5.1.2-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 64b2c5785211ebde076f711f1a9cf8f87a3d5923 2044 mobyle

Accepted mapsembler2 2.2.3+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 765285 Changes: mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium . * New upstream release * Fix some compilation issues * Fix FTBS on non x86 (Closes

Accepted biojava3-live 3.1.0+dfsg-2 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted minia 1.6906-1 (source amd64) into unstable

Changed-By: Olivier Sallou osal...@debian.org Description: minia - short-read biological sequence assembler Changes: minia (1.6906-1) unstable; urgency=medium . * New upstream release $ d/patches: updates patches to new release Checksums-Sha1: 7ae0f410fc61439b325fc122f0b2fe2a0489a15c

Accepted circos-tools 0.20-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.20-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * cme fix dpkg-control * debhelper 9 Checksums-Sha1

Accepted discosnp 1.2.6-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.6-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 9f0c671b17417f9516d2c2b62782a53a3a14cd0e 2009

Accepted mobyle 1.5.3+dfsg-2 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.3+dfsg-2) unstable; urgency=medium . * d/control: set jing as Recommends

Accepted ncbi-blast+ 2.2.30-1 (source amd64 all) into experimental

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.30-1) experimental; urgency=medium . * New upstream

Accepted biomaj-watcher 1.2.2-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 769348 Changes: biomaj-watcher (1.2.2-2) unstable; urgency=medium . * Switch to Tomcat 8 (Closes: #769348). Checksums-Sha1

Accepted logol 1.7.0-2 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.0-2) unstable; urgency=medium . * d/control,d/patches/remove_drmaa_support: Remove libdrmaa

Accepted cassiopee 1.0.2+dfsg-1 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted ncbi-blast+ 2.2.30-3 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.30-3) unstable; urgency=medium . * Switch to unstable

Accepted logol 1.7.2-1 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.2-1) unstable; urgency=medium . * New upstream release d/control: use Standars 3.9.6

Accepted cassiopee 1.0.3+dfsg-1 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted cassiopee 1.0.3+dfsg-2 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted gbrowse 2.54+dfsg-5 (source amd64 all) into unstable

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 789734 Changes: gbrowse (2.54+dfsg-5) unstable; urgency=medium . * d

Accepted libchado-perl 1.23-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Closes: 789114 Changes: libchado-perl (1.23-3) unstable; urgency=medium . * Add libmodule-build-perl

Accepted libbio-graphics-perl 2.39-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Closes: 789063 Changes: libbio-graphics-perl (2.39-3) unstable; urgency=medium . * Add libmodule-build-perl dep (Closes: #789063). Checksums-Sha1

Accepted gbrowse 2.54+dfsg-4 (source amd64 all) into unstable

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 788642 Changes: gbrowse (2.54+dfsg-4) unstable; urgency=medium . * d

Accepted logol 1.7.2-2 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Closes: 790136 Changes: logol (1.7.2-2) unstable; urgency=medium . * d/patches/fix_swipl72: Fix swipl v7.x

Accepted biojava4-live 4.1.0+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted biojava4-live 4.1.0+dfsg-2 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted biojava4-live 4.1.0+dfsg-3 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted python-fitbit 0.1.3-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: python-fitbit - FitBit REST API Client Implementation Closes: 796538 Changes: python-fitbit (0.1.3-2) unstable; urgency=medium . * Replace tox by nose to avoid creating a virtualenv and downloading remote data (Closes

Accepted bioperl 1.6.924-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: bioperl- Perl tools for computational molecular biology libbio-perl-perl - BioPerl core perl modules Closes: 790305 Changes: bioperl (1.6.924-2) unstable; urgency=medium . * d/control: add perl-modules for perl

Accepted figtree 1.4.2-1 (source all) into unstable

Changed-By: Olivier Sallou osal...@debian.org Description: figtree- graphical phylogenetic tree viewer Changes: figtree (1.4.2-1) unstable; urgency=medium . * New upstream release * d/control: use standards 3.9.6 Checksums-Sha1: f5b4c7e88946b888ac71d80f41435d3590e5c677 2321 figtree_1.4.2

Accepted biojava4-live 4.0.0+dfsg-1 (source all) into unstable, unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted repeatmasker-recon 1.08-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: repeatmasker-recon - finds repeat families from biological sequences Closes: 796487 Changes: repeatmasker-recon (1.08-1) unstable; urgency=low . * Initial release (Closes: # 796487) Ch

Accepted bio-rainbow 2.0.4-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: bio-rainbow - clustering and assembling short reads for bioinformatics Closes: 795865 Changes: bio-rainbow (2.0.4-1) unstable; urgency=low . * Initial release (Closes: #795865) Ch

Accepted biomaj 1.2.3-6 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 800985 Changes: biomaj (1.2.3-6) unstable; urgency=medium . * Replac

Accepted python-cutadapt 1.8.3-1 (source amd64) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Closes: 795822 Chan

Accepted biomaj 1.2.3-5 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 800767 Changes: biomaj (1.2.3-5) unstable; urgency=medium . * Replace libcommo

Accepted ncbi-blast+ 2.2.31-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.31-2) unstable; urgency=medium . * Fix a l

Accepted python-cutadapt 1.9.1-1 (source amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Changes: python-cut

Accepted ncbi-blast+ 2.2.31-1 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 793263 798277 Changes: ncbi-blast+ (2.2.31-1) unstable; ur

Accepted circos-tools 0.21-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.21-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 66845e3f6c763c83fddb7d53a7804a8355019ba9 1999 circo

Accepted circos 0.69-1 (source all) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.69

Accepted biomaj-watcher 1.2.2-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj-watcher - biological data-bank updater - web interface Changes: biomaj-watcher (1.2.2-3) unstable; urgency=medium . * Add Turkish translation (Thanks to Mert Dirik <mertdi...@gmail.com)

Accepted bytecode 0.92.svn.20090106-2 (source all) into unstable

ava-maintain...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbytecode-java - Java bytecode manipulation library libbytecode-java-doc - Documentation for the API of the Java bytecode library Closes: 817385 Changes: bytecode (0.92.svn.20090106

Accepted biomaj 1.2.3-8 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 826903 Changes: biomaj (1.2.3-8) unstable; urgency=medium . * Allow mysql ski

Accepted biomaj 1.2.3-9 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 825046 Changes: biomaj (1.2.3-9) unstable; urgency=medium . * Add Brazilia

Accepted ngs-sdk 1.2.3-1 (source amd64) into unstable, unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk1 - Nex

Accepted cassiopee 1.0.4+dfsg-1 (source amd64 all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library

Accepted libchado-perl 1.31-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Changes: libchado-perl (1.31-1) unstable; urgency=medium . * New upstream release Ch

Accepted logol 1.7.4-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.4-1) unstable; urgency=medium . * New upstream release Ch

Accepted python-dictobj 0.4-1 (source amd64) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-dictobj - Dictionary where keys can be accessed as instance attributes python3-dictobj - Dictionary where keys can be accessed as instance attributes Closes: 829565 Changes: python-di

Accepted python-biomaj3 3.0.20-1 (source all) into unstable, unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj3-commons - biological data-bank updater python-biomaj3 - biological data-bank updater (Python 2) python3-biomaj3 - biological data-bank updater (Python 3) Closes: 85

Accepted bedops 2.4.20+dfsg-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: bedops - high-performance genomic feature operations Closes: 853892 854003 Changes: bedops (2.4.20+dfsg-2) unstable; urgency=medium . * avoid underlinking when linking with --as-needed (Closes: #854003)

Accepted bedops 2.4.20+dfsg-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 13 Jan 2017 10:27:13 + Source: bedops Binary: bedops Architecture: source amd64 Version: 2.4.20+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Olivier Sallou <osal...@debian.org> Changed-By: Olivier Sallou

Accepted baitfisher 1.0+dfsg-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: baitfisher - software package for designing hybrid enrichment probes Closes: 851342 Changes: baitfisher (1.0+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #851342) Ch

Accepted ncbi-blast+ 2.6.0-1 (source all amd64) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: blast2 - transitional dummy package to ncbi-blast+-legacy ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Ch

Accepted python-cutadapt 1.11-1 (source all amd64) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cuta

Accepted ngs-sdk 1.2.5-1 (source amd64) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk1 - Nex

Accepted igv 2.3.81+dfsg-1 (source all) into unstable

org> Changed-By: Olivier Sallou <osal...@debian.org> Description: igv- Integrative Genomics Viewer Changes: igv (2.3.81+dfsg-1) unstable; urgency=medium . * New upstream release 2.3.81+dfsg Checksums-Sha1: 6546ff43e8ffaf8db6be8778fc34f0b76718ae9f 2498 igv_2.3.8

Accepted biomaj 1.2.3-10 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Changes: biomaj (1.2.3-10) unstable; urgency=medium . * Patch biomajlogger to match

Accepted logol 1.7.5-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.5-1) unstable; urgency=medium . * New upstream release Ch

Accepted cassiopee 1.0.5-1 (source amd64 all) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1

Accepted biojava4-live 4.2.4+dfsg-1 (source all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-jav

Accepted ncbi-blast+ 2.5.0-1 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.5.0-1) unstable; urgency=medium . * New upst

Accepted biojava4-live 4.2.4+dfsg-2 (source all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-jav

Accepted biomaj-watcher 1.2.2-5 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj-watcher - biological data-bank updater - web interface Closes: 866066 Changes: biomaj-watcher (1.2.2-5) unstable; urgency=medium . * Team upload. * Add slf4j libraries required by libquartz-java t

Accepted libzstd 1.2.0-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libzstd-dev - fast lossless compression algorithm -- development files libzstd1 - fast lossless compression algorithm zstd - fast lossless compression algorithm -- CLI tool Closes: 863159 Changes: libz

Accepted biojava4-live 4.2.7+dfsg-1 (source all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-jav

Accepted bedops 2.4.26+dfsg-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: bedops - high-performance genomic feature operations Changes: bedops (2.4.26+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 7cda96eac1978648734f3a403abe4bdf65cfa7fe 2014 bedops_2.4.2

Accepted python-cutadapt 1.13-1 (source all amd64) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cuta

Accepted rdp-classifier 2.10.2-2 (source all) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: rdp-classifier - extensible sequence classifier for fungal lsu, bacterial and arch rdp-classifier-doc - documentation and examples for rdp-classifier Closes: 875789 Changes: rdp-classifi

Accepted biojava4-live 4.2.7+dfsg-2 (source all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-jav

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