Accepted gffread 0.11.7-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 27 Jan 2020 11:04:06 +0100
Source: gffread
Architecture: source
Version: 0.11.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gffread (0.11.7-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted r-cran-biwt 1.0-1 (source amd64) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 20 Jan 2020 18:04:20 +0100
Source: r-cran-biwt
Binary: r-cran-biwt
Architecture: source amd64
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-biwt - biweight mean vector and covariance and correlation
Closes: 949397
Changes:
 r-cran-biwt (1.0-1) unstable; urgency=medium
 .
   * Initial release (closes: #949397)
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Accepted r-bioc-multiassayexperiment 1.12.2+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sun, 26 Jan 2020 15:25:00 +0100
Source: r-bioc-multiassayexperiment
Architecture: source
Version: 1.12.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-bioc-multiassayexperiment (1.12.2+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
   * Updated d/u/metadata with ref to conda and bio.tools
   * Standards-Version: 4.5.0
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Accepted python-pyfaidx 0.5.8-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 25 Jan 2020 18:58:55 +0100
Source: python-pyfaidx
Architecture: source
Version: 0.5.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-pyfaidx (0.5.8-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.5.0
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository.
   * Improved clean.
   * Creating bgzipped test data
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Accepted biobambam2 2.0.152+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 24 Jan 2020 12:37:00 +0100
Source: biobambam2
Architecture: source
Version: 2.0.152+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 biobambam2 (2.0.152+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted pyutilib 5.7.3-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 24 Jan 2020 13:14:08 +0100
Source: pyutilib
Architecture: source
Version: 5.7.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Steffen Moeller 
Closes: 949730
Changes:
 pyutilib (5.7.3-1) unstable; urgency=medium
 .
   [ Ondřej Nový ]
   * d/control: Set Vcs-* to salsa.debian.org
   * d/copyright: Use https protocol in Format field
   * Convert git repository from git-dpm to gbp layout
   * Use debhelper-compat instead of debian/compat.
   * Bump Standards-Version to 4.4.1.
 .
   [ Andreas Tille ]
   * Add myself as Uploader
   * debhelper 12
   * Do not exclude .gitignore from upstream source
 .
   [ Steffen Moeller ]
   * New upstream version
   * Testsuite: autopkgtest-pkg-python (routine-update)
   * Remove trailing whitespace in debian/copyright (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
   * Added suggestion to 'valgrind'
   * Bump Standards-Version to 4.5.0
   * Removed invocations of python2 (Closes: #949730)
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Accepted python-cutadapt 2.8-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 24 Jan 2020 12:50:31 +0100
Source: python-cutadapt
Architecture: source
Version: 2.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-cutadapt (2.8-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.5.0
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
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Accepted python-deeptools 3.3.2+ds-1 (source all) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 23 Jan 2020 20:07:39 +0100
Source: python-deeptools
Binary: python3-deeptools
Architecture: source all
Version: 3.3.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 python3-deeptools - platform for exploring biological deep-sequencing data
Closes: 934321
Changes:
 python-deeptools (3.3.2+ds-1) unstable; urgency=medium
 .
   * Initial release (Closes: #934321)
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Remove trailing whitespace in debian/control (routine-update)
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Accepted r-bioc-org.hs.eg.db 3.10.0-1 (source all) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Tue, 14 Jan 2020 14:36:37 +0100
Source: r-bioc-org.hs.eg.db
Binary: r-bioc-org.hs.eg.db
Architecture: source all
Version: 3.10.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-bioc-org.hs.eg.db - genome-wide annotation for Human
Closes: 948906
Changes:
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 .
   * Initial release (closes: #948906)
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Accepted bedtools 2.29.2+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 18 Jan 2020 01:44:47 +0100
Source: bedtools
Architecture: source
Version: 2.29.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bedtools (2.29.2+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Fixed failing intersect.new #78 test as instructed on
 https://github.com/arq5x/bedtools2/issues/814
   * Standard-Version: 4.5.0
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Accepted libmaus2 2.0.694+ds-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 23 Jan 2020 10:20:02 +0100
Source: libmaus2
Architecture: source
Version: 2.0.694+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 libmaus2 (2.0.694+ds-1) unstable; urgency=medium
 .
   * New upstream version
   * Added myself as uploader.
   * Standards-Version: 4.5.0
   * Set upstream metadata fields: Bug-Database, Repository, Repository-
 Browse.
   * Removing autogenerated files that upstream intentionally adds
 to the release.
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Accepted r-cran-adegenet 2.1.2-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 23 Jan 2020 10:10:55 +0100
Source: r-cran-adegenet
Architecture: source
Version: 2.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-adegenet (2.1.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.5.0
   * debhelper-compat 12 (routine-update)
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Accepted gubbins 2.4.1-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 22 Jan 2020 12:30:58 +0100
Source: gubbins
Architecture: source
Version: 2.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gubbins (2.4.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Remove trailing whitespace in debian/changelog (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository.
   * Specified raxml version from Dockerfile - test complained on i386
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Accepted mmseqs2 10-6d92c+ds-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sun, 19 Jan 2020 14:16:12 +0100
Source: mmseqs2
Architecture: source
Version: 10-6d92c+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 mmseqs2 (10-6d92c+ds-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Standards-Version: 4.4.1 (routine-update)
 .
   TODO: Find proper response to upstream in CMakeList.txt:
 # We use ZSTD_findDecompressedSize which is only available with 
ZSTD_STATIC_LINKING_ONLY
 # Thus we cannot use a system provided libzstd
 A grep for 'findDecompressedSize' in the source tree is negative.
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Accepted trnascan-se 2.0.5-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 18 Jan 2020 23:33:33 +0100
Source: trnascan-se
Architecture: source
Version: 2.0.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 trnascan-se (2.0.5-1) unstable; urgency=medium
 .
   * Team upload.
 .
   * Added a few autogenerated files to be excluded for
 d/copyright.
   * d/control:
 - Changed XS-Autobuild to: yes
 - Standards-Version: 4.4.1 (routine-update)
   * Remove trailing whitespace in debian/changelog (routine-update)
   * debian/copyright: use spaces rather than tabs to start continuation
 lines.
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Accepted cluster3 1.59-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 19 Jan 2020 00:45:36 +0100
Source: cluster3
Architecture: source
Version: 1.59-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 cluster3 (1.59-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Standards-Version: 4.4.1 (routine-update)
   * Remove trailing whitespace in debian/copyright (routine-update)
   * Remove trailing whitespace in debian/rules (routine-update)
   * Trim trailing whitespace.
   * Remove obsolete fields Contact, Name from debian/upstream/metadata
 (already present in machine-readable debian/copyright).
   * Rely on pre-initialized dpkg-architecture variables.
   * Fix day-of-week for changelog entry 1.25-0.2.
   * python2 -> python3
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Accepted umis 1.0.6-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 18 Jan 2020 22:48:47 +0100
Source: umis
Architecture: source
Version: 1.0.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 umis (1.0.6-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Standards-Version: 4.4.1 (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
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Accepted sumaclust 1.0.34-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 29 Nov 2019 13:38:31 +0100
Source: sumaclust
Architecture: source
Version: 1.0.34-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 sumaclust (1.0.34-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Secure URI in copyright format
   * Remove trailing whitespace in debian/copyright
   * debian/copyright: use spaces rather than tabs to start continuation
 lines.
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Accepted tnseq-transit 3.0.2-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 18 Jan 2020 22:48:31 +0100
Source: tnseq-transit
Architecture: source
Version: 3.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 tnseq-transit (3.0.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Set upstream metadata fields: Bug-Submit.
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Accepted seqmagick 0.8.0-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 18 Jan 2020 22:22:51 +0100
Source: seqmagick
Architecture: source
Version: 0.8.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 seqmagick (0.8.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Standards-Version: 4.4.1 (routine-update)
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Accepted python-treetime 0.7.1-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 18 Jan 2020 21:23:53 +0100
Source: python-treetime
Architecture: source
Version: 0.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-treetime (0.7.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Remove trailing whitespace in debian/changelog (routine-update)
   * Set field Upstream-Name in debian/copyright.
   * Adjusted d/watch to allow omission of "v" prefix
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Accepted kma 1.2.21-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 17 Jan 2020 23:29:19 +0100
Source: kma
Architecture: source
Version: 1.2.21-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kma (1.2.21-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted alfred 2019.5-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 17 Jan 2020 16:45:22 +0100
Source: alfred
Architecture: source
Version: 2019.5-1
Distribution: unstable
Urgency: low
Maintainer: Steffen Moeller 
Changed-By: Steffen Moeller 
Changes:
 alfred (2019.5-1) unstable; urgency=low
 .
   * New upstream version.
   * Added d/u/metadata - analogous to the one for batman
   * Added Sven Eckelmann to uploaders
   * Upgraded to policy 4.4.1, no changes required
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Accepted alfred 2018.2-2 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 17 Jan 2020 16:30:57 +0100
Source: alfred
Architecture: source
Version: 2018.2-2
Distribution: unstable
Urgency: low
Maintainer: Steffen Moeller 
Changed-By: Steffen Moeller 
Changes:
 alfred (2018.2-2) unstable; urgency=low
 .
   * Added Sebiastian's patch to overcome changed
 API of libgpds:
 .
 libgpsd 3.20 removed the timestamp_t type and the function
 unix_to_iso8601(). The same release introduced the timespec_t based
 function timespec_to_iso8601().
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Accepted r-cran-proc 1.16.1-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 15 Jan 2020 11:13:20 +0100
Source: r-cran-proc
Architecture: source
Version: 1.16.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-proc (1.16.1-1) unstable; urgency=medium
 .
   [ Dylan Aïssi ]
   * Add r-cran-mass to test-deps.
   TODO: add r-cran-vdiffr (in New queue -> #948825)
 and r-cran-logcondens
 (https://salsa.debian.org/r-pkg-team/r-cran-logcondens - can't ITP 
any more since I reached my 5 packages per hour limit :-P)
 .
   [ Steffen Moeller ]
   * New upstream version
   * Standards-Version: 4.4.1 (routine-update)
   * Trim trailing whitespace.
   * Set upstream metadata fields: Archive, Bug-Database, Bug-Submit.
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Accepted r-cran-robustrankaggreg 1.1-1 (source all) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 07 Jan 2020 16:26:03 +0100
Source: r-cran-robustrankaggreg
Binary: r-cran-robustrankaggreg
Architecture: source all
Version: 1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-robustrankaggreg - Methods for robust rank aggregation
Closes: 948345
Changes:
 r-cran-robustrankaggreg (1.1-1) unstable; urgency=medium
 .
   * Initial release (closes: #948345)
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Accepted fastqc 0.11.9+dfsg-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 12 Jan 2020 22:40:39 +0100
Source: fastqc
Architecture: source
Version: 0.11.9+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 fastqc (0.11.9+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12 (routine-update)
   * Standards-Version: 4.4.1 (routine-update)
   * Updated patches.
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Accepted milib 1.12-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 09 Jan 2020 14:00:32 +0100
Source: milib
Architecture: source
Version: 1.12-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 milib (1.12-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1 (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
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Accepted gubbins 2.4.0-2 (source) into unstable

[Steffen Moeller]

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Date: Thu, 09 Jan 2020 02:31:16 +0100
Source: gubbins
Architecture: source
Version: 2.4.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gubbins (2.4.0-2) unstable; urgency=medium
 .
   * Team upload.
   * Fix run_gubbins wrapper (Sascha Steinbiss)
   * raxml needed as default method at runtime - turned back into
 hard dependency (suggested by Sascha)
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Accepted gubbins 2.4.0-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 08 Jan 2020 12:59:28 +0100
Source: gubbins
Architecture: source
Version: 2.4.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gubbins (2.4.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
 .
   * Removing debian/patches/disable_test.patch which apparently upstream
 addressed in its new release.
   * Added build-time (testing) and recommended runtime dependency on iqtree
   * Demoted runtime-dependencies to fasttree and raxml to recommended
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Accepted fasta3 36.3.8h-1 (source amd64 all) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 06 Jan 2020 12:20:34 +0100
Source: fasta3
Binary: fasta3 fasta3-dbgsym fasta3-doc
Architecture: source amd64 all
Version: 36.3.8h-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 fasta3 - tools for searching collections of biological sequences
 fasta3-doc - user guide for FASTA tools
Changes:
 fasta3 (36.3.8h-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.0
 .
 TODO: Do we really need to use non-free smith waterman code?
   There is a free libssw.  Please contact upstream!
 .
   [ Steffen Moeller]
   * Standards-Version: 4.4.1
   * Fixed patches - somehow one Makefile.common was removed but needed
 that led to a FTBFS.
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Accepted python-cgecore 1.5.2-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 06 Jan 2020 17:33:07 +0100
Source: python-cgecore
Architecture: source
Version: 1.5.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-cgecore (1.5.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Set upstream metadata fields: Repository.
   * Remove obsolete field Name from debian/upstream/metadata (already
 present in machine-readable debian/copyright).
   * Cleaning egg-info directory
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Accepted kaptive 0.7.0-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 06 Jan 2020 17:19:03 +0100
Source: kaptive
Architecture: source
Version: 0.7.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kaptive (0.7.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Set upstream metadata fields: Bug-Database, Repository, Repository-
 Browse.
   * Also clean up auto-generated egg-info files
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Accepted ragout 2.2+ds-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2020 19:07:58 +0100
Source: ragout
Architecture: source
Version: 2.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Closes: 938330
Changes:
 ragout (2.2+ds-1) unstable; urgency=medium
 .
   * Team upload
 .
   [Andreas Tille]
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.0
   * Use 2to3 to port to Python3 (Closes: #938330)
 also see https://github.com/fenderglass/Ragout/issues/52
   [Steffen Moeller]
   * Not having Python install binaries in setup.py, chaning
 d/ragout.install accordingly
   * bin/ragout was still about to invoke python2
   * maketrans is now a static function of str
   * not allowing bin/ragout to change $PATH
   * demoted sibelia to recommends runtime dependency as there are
 modules that don't use it.
 TODO: Find out what happened to
   https://salsa.debian.org/med-team/sibelia
 which is not in new or main.
   * use "ds" not "dfsg" as version suffix since files were removed
 but no functional changes have been performed.
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Accepted r-cran-itertools 0.1-3-1 (source all) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 26 Dec 2019 21:35:01 +0100
Source: r-cran-itertools
Binary: r-cran-itertools
Architecture: source all
Version: 0.1-3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-itertools - Iterator Tools
Closes: 947430
Changes:
 r-cran-itertools (0.1-3-1) unstable; urgency=medium
 .
   * Initial release (closes: #947430)
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Accepted r-cran-seurat 3.1.2-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 01 Jan 2020 18:42:47 +0100
Source: r-cran-seurat
Architecture: source
Version: 3.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-seurat (3.1.2-1) unstable; urgency=medium
 .
   * New upstream version
   * dh-update-R to update Build-Depends
   * Set upstream metadata fields: Bug-Submit.
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Accepted r-cran-uwot 0.1.5-2 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Tue, 31 Dec 2019 03:00:05 +0100
Source: r-cran-uwot
Architecture: source
Version: 0.1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-uwot (0.1.5-2) unstable; urgency=medium
 .
   * Merged own packaging with the one by Andreas.
   * TODO: Added dependency on libtbb-dev, does not FTBFS without it
 but states not to find it - which it still does when added,
 which remains to be investigated.
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Accepted r-cran-uwot 0.1.5-1 (source) into unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Mon, 30 Dec 2019 22:46:18 +0100
Source: r-cran-uwot
Architecture: source
Version: 0.1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Closes: 947796
Changes:
 r-cran-uwot (0.1.5-1) unstable; urgency=medium
 .
   * New upstream version.
   * Initial release (closes: #947796)
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Accepted r-cran-shazam 0.2.2-1 (source) into unstable

[Steffen Moeller]

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Date: Mon, 30 Dec 2019 18:12:32 +0100
Source: r-cran-shazam
Architecture: source
Version: 0.2.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-shazam (0.2.2-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Set upstream metadata fields: Archive, Bug-Database.
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Accepted gmap 2019-09-12+ds-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 30 Dec 2019 02:05:39 +0100
Source: gmap
Architecture: source
Version: 2019-09-12+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gmap (2019-09-12+ds-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Set upstream metadata fields: Bug-Submit (from ./configure).
   * Remove obsolete fields Name from debian/upstream/metadata.
   * Rely on pre-initialized dpkg-architecture variables.
   * Remove automake/-conf created files from source tree, adapt patch
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Accepted kma 1.2.19-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 27 Dec 2019 20:12:38 +0100
Source: kma
Architecture: source
Version: 1.2.19-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kma (1.2.19-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted r-cran-sctransform 0.2.1-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 26 Dec 2019 21:11:19 +0100
Source: r-cran-sctransform
Architecture: source
Version: 0.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-sctransform (0.2.1-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Set upstream metadata fields: Archive, Bug-Database, Bug-Submit,
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Accepted r-bioc-geoquery 2.54.1+dfsg-1 (source all) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Sun, 01 Dec 2019 03:15:05 +0100
Source: r-bioc-geoquery
Binary: r-bioc-geoquery
Architecture: source all
Version: 2.54.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-bioc-geoquery - Get data from NCBI Gene Expression Omnibus (GEO)
Closes: 945919
Changes:
 r-bioc-geoquery (2.54.1+dfsg-1) unstable; urgency=medium
 .
   * Initial release (closes: #945919)
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Accepted r-cran-wgcna 1.68-1 (source amd64) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 26 Nov 2019 17:16:11 +0100
Source: r-cran-wgcna
Binary: r-cran-wgcna r-cran-wgcna-dbgsym
Architecture: source amd64
Version: 1.68-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-wgcna - Weighted Correlation Network Analysis
Closes: 939972
Changes:
 r-cran-wgcna (1.68-1) unstable; urgency=medium
 .
   * New upstream version, first upload (closes: #939972).
   * Now vailable from CRAN - renamed yet unreleased package accordingly
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Accepted pyutilib 5.7.1-1 (source all) into unstable, unstable

[Steffen Moeller]

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Date: Mon, 30 Sep 2019 14:00:59 +0200
Source: pyutilib
Binary: python3-pyutilib
Architecture: source all
Version: 5.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Steffen Moeller 
Description:
 python3-pyutilib - Python 3 library featuring development utilities
Changes:
 pyutilib (5.7.1-1) unstable; urgency=medium
 .
   * New uptream version
   * Improved d/copyright in reaction to Scott K.'s (FTPmaster)
 scrutiny.
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Accepted spaln 2.3.2b-1 (source amd64) into unstable, unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Sun, 03 Feb 2019 15:48:51 +0100
Source: spaln
Binary: spaln spaln-dbgsym
Architecture: source amd64
Version: 2.3.2b-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 spaln  - splicing-aware transcript-alignment to genomic DNA
Closes: 921514
Changes:
 spaln (2.3.2b-1) unstable; urgency=medium
 .
   * Initial release (Closes: #921514)
   * Shipping with a nice d/watch file contributed by Andreas 
 .
   * TODO:
 - The Perl interface is not auto-installed. Waiting for feedback
   from the community.
 - src/dbs.h should be removed from archive sice auto-created
   at configure time
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Accepted nanopolish 0.11.3-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 21 Dec 2019 19:10:21 +0100
Source: nanopolish
Architecture: source
Version: 0.11.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 nanopolish (0.11.3-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted last-align 1044-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 21 Dec 2019 00:28:04 +0100
Source: last-align
Architecture: source
Version: 1044-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 last-align (1044-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
 .
   * TODO: hope for new upstream version that does not require
   SSE or AVX to compile.
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Accepted gubbins 2.3.5-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 21 Dec 2019 00:00:10 +0100
Source: gubbins
Architecture: source
Version: 2.3.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 gubbins (2.3.5-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Secure URI in copyright format
   * Set upstream metadata fields: Repository, Repository-Browse.
   * Cleaner clean
   * Reported autogenerated files in source tree to upstream
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Accepted tm-align 20190822+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Tue, 17 Dec 2019 17:23:09 +0100
Source: tm-align
Architecture: source
Version: 20190822+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 tm-align (20190822+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1
   * Use secure URI in Homepage field.
   * Remove obsolete fields Contact, Name from debian/upstream/metadata.
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Accepted proteinortho 6.0.12+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 13 Dec 2019 00:17:49 +0100
Source: proteinortho
Architecture: source
Version: 6.0.12+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 proteinortho (6.0.12+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * debian/copyright: use spaces rather than tabs to start continuation
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Accepted phyx 1.01+ds-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 12 Dec 2019 12:50:28 +0100
Source: phyx
Architecture: source
Version: 1.01+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 phyx (1.01+ds-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Removed obsolete 2to3 patch
   * Adjusted cleanup after build
   * Not having upstream's auto-generated src/configure in source tree
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Accepted bcbio 1.1.9-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Wed, 11 Dec 2019 11:39:46 +0100
Source: bcbio
Architecture: source
Version: 1.1.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bcbio (1.1.9-1) unstable; urgency=medium
 .
   * New upstream version.
   * Updated d/watch
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Accepted libbigwig 0.4.4+dfsg-1 (source) into unstable

[Steffen Moeller]

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Date: Thu, 05 Dec 2019 12:36:34 +0100
Source: libbigwig
Architecture: source
Version: 0.4.4+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
Changed-By: Steffen Moeller 
Changes:
 libbigwig (0.4.4+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Remove trailing whitespace in debian/copyright
   * Remove patches pythonVersion.patch that are missing from
 debian/patches/series.
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Accepted mirtop 0.4.23-1 (source) into unstable

[Steffen Moeller]

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Date: Thu, 05 Dec 2019 11:43:49 +0100
Source: mirtop
Architecture: source
Version: 0.4.23-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 mirtop (0.4.23-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Remove trailing whitespace in debian/copyright
   * Set upstream metadata fields: Repository, Repository-Browse.
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Accepted last-align 1021-1 (source) into unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Wed, 04 Dec 2019 13:35:17 +0100
Source: last-align
Architecture: source
Version: 1021-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 last-align (1021-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Fiddling with CFLAGS/CXXFLAGS defaults in Makefile
   * fixed and minimized 2to3-patches - path for last-train
 so there is no FTBFS when generating man pages
 .
   * TODO: Need to work on platform dependencies
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Accepted diamond-aligner 0.9.29+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Thu, 05 Dec 2019 00:17:29 +0100
Source: diamond-aligner
Architecture: source
Version: 0.9.29+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 diamond-aligner (0.9.29+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted bio-tradis 1.4.5+dfsg-1 (source) into unstable

[Steffen Moeller]

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Date: Wed, 04 Dec 2019 16:37:12 +0100
Source: bio-tradis
Architecture: source
Version: 1.4.5+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bio-tradis (1.4.5+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Set upstream metadata fields: Repository, Repository-Browse.
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Accepted r-cran-sdmtools 1.1-221.2-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 04 Dec 2019 14:36:56 +0100
Source: r-cran-sdmtools
Architecture: source
Version: 1.1-221.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-sdmtools (1.1-221.2-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Set upstream metadata fields: Archive.
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Accepted trim-galore 0.6.5-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 04 Dec 2019 14:41:47 +0100
Source: trim-galore
Architecture: source
Version: 0.6.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Closes: 933975
Changes:
 trim-galore (0.6.5-1) unstable; urgency=medium
 .
   * Initial release (Closes: #933975)
 .
 TODO: Write test script
   Deal with documentation
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Set upstream metadata fields: Repository, Repository-Browse.
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Accepted pycorrfit 1.1.7+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 04 Dec 2019 14:19:32 +0100
Source: pycorrfit
Architecture: source
Version: 1.1.7+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 pycorrfit (1.1.7+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Do not parse d/changelog
   * Drop ancient X-Python-Version field
   * Use secure URI in Homepage field.
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Accepted iqtree 1.6.12+dfsg-1 (source) into unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Wed, 04 Dec 2019 13:52:57 +0100
Source: iqtree
Architecture: source
Version: 1.6.12+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 iqtree (1.6.12+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
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Accepted mapdamage 2.1.1+dfsg-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 30 Nov 2019 18:52:19 +0100
Source: mapdamage
Architecture: source
Version: 2.1.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 mapdamage (2.1.1+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
 - eliminates two patches
   + na.rm
   + import
 - rescale_test.py no longer available - simpler build process
   * Standards-Version: 4.4.1
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Accepted kma 1.2.16-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 30 Nov 2019 16:00:16 +0100
Source: kma
Architecture: source
Version: 1.2.16-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kma (1.2.16-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Set upstream metadata fields: Repository.
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Accepted atropos 1.1.24+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 30 Nov 2019 13:00:31 +0100
Source: atropos
Architecture: source
Version: 1.1.24+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 atropos (1.1.24+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Trim trailing whitespace.
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Accepted infernal 1.1.3-1 (source) into unstable

[Steffen Moeller]

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Date: Sat, 30 Nov 2019 00:03:03 +0100
Source: infernal
Architecture: source
Version: 1.1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 infernal (1.1.3-1) unstable; urgency=medium
 .
   * New upstream version
 - Upstream accepted patch for reproducible builds
 - autoreconf now works without respective non-applicable patch
   * Still debian/TODO: remove code copy of hmmer
   * debhelper-compat 12
   * Standards-Version: 4.4.1
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Accepted vsearch 2.14.1-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 29 Nov 2019 14:31:50 +0100
Source: vsearch
Architecture: source
Version: 2.14.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 vsearch (2.14.1-1) unstable; urgency=medium
 .
   * Team upload
 .
   * Added link-time optimization.
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Set upstream metadata fields: Repository, Repository-Browse.
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Accepted stringtie 2.0.4+ds-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 29 Nov 2019 12:26:46 +0100
Source: stringtie
Architecture: source
Version: 2.0.4+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 stringtie (2.0.4+ds-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Set upstream metadata fields: Repository.
   * Adapted clean-up after build
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Accepted r-bioc-ensembldb 2.10.2+dfsg-1 (source) into unstable

[Steffen Moeller]

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Date: Tue, 26 Nov 2019 15:08:49 +0100
Source: r-bioc-ensembldb
Architecture: source
Version: 2.10.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-bioc-ensembldb (2.10.2+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted bcbio 1.1.8-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Tue, 26 Nov 2019 14:05:42 +0100
Source: bcbio
Architecture: source
Version: 1.1.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bcbio (1.1.8-1) unstable; urgency=medium
 .
   * New upstream version.
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Accepted r-bioc-iranges 2.20.1-1 (source) into unstable

[Steffen Moeller]

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Date: Tue, 26 Nov 2019 12:20:03 +0100
Source: r-bioc-iranges
Architecture: source
Version: 2.20.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-bioc-iranges (2.20.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debian/copyright: Use spaces rather than tabs in continuation lines.
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Accepted python-cutadapt 2.7-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 25 Nov 2019 14:17:56 +0100
Source: python-cutadapt
Architecture: source
Version: 2.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-cutadapt (2.7-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted hmmer 3.3+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 22 Nov 2019 19:14:46 +0100
Source: hmmer
Architecture: source
Version: 3.3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 hmmer (3.3+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
 .
   * New upstream version
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Accepted kma 1.2.15-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 22 Nov 2019 09:29:54 +0100
Source: kma
Architecture: source
Version: 1.2.15-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kma (1.2.15-1) unstable; urgency=medium
 .
   * Team upload.
 .
   * New upstream version
   * Standards-Version: 4.4.1
   * Hardening-patch adopted upstream
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Accepted mafft 7.453-1 (source) into unstable

[Steffen Moeller]

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Date: Thu, 21 Nov 2019 17:27:17 +0100
Source: mafft
Architecture: source
Version: 7.453-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 mafft (7.453-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Trim trailing whitespace.
   * Use secure URI in Homepage field.
   * Set fields Upstream-Name, Upstream-Contact in debian/copyright.
   * Remove obsolete fields Name, Contact from debian/upstream/metadata.
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Accepted atropos 1.1.22+dfsg-1 (source amd64) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 21 Nov 2019 16:24:36 +0100
Source: atropos
Binary: atropos atropos-dbgsym
Architecture: source amd64
Version: 1.1.22+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 atropos- NGS read trimming tool that is specific, sensitive, and speedy
Changes:
 atropos (1.1.22+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
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Accepted python-deeptoolsintervals 0.1.9-1 (source amd64) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 07 Aug 2019 20:34:03 +0200
Source: python-deeptoolsintervals
Binary: python3-deeptoolsintervals python3-deeptoolsintervals-dbgsym
Architecture: source amd64
Version: 0.1.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 python3-deeptoolsintervals - handlig GTF-like sequence-associated 
interal-annotation
Closes: 934172
Changes:
 python-deeptoolsintervals (0.1.9-1) unstable; urgency=medium
 .
   * Initial release (Closes: #934172)
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Accepted vdjtools 1.2.1+git20190311-1 (source all) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 14 Aug 2019 17:38:26 +0200
Source: vdjtools
Binary: libvdjtools-java vdjtools
Architecture: source all
Version: 1.2.1+git20190311-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers 

Changed-By: Steffen Moeller 
Description:
 libvdjtools-java - Java library of vdjtools
 vdjtools   - framework for post-analysis of B/T cell repertoires
Closes: 903207
Changes:
 vdjtools (1.2.1+git20190311-1) unstable; urgency=medium
 .
   * Initial release (Closes: #903207)
 .
 Upstream accepted my patch to extend the gradle search path
 for jars.
 .
 Added new patch to find the commons-math3 library.
 
https://github.com/mikessh/vdjtools/pull/128/commits/177014136a716416b3b697ce31df365472066225
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Accepted skewer 0.2.2-1 (source amd64) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 08 Nov 2019 23:23:55 +0100
Source: skewer
Binary: skewer skewer-dbgsym
Architecture: source amd64
Version: 0.2.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 skewer - post-processing of high-throughput DNA sequence reads
Closes: 944385
Changes:
 skewer (0.2.2-1) unstable; urgency=medium
 .
   * Initial release (Closes: #944385)
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Accepted r-cran-pcapp 1.9-73-1 (source amd64) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 05 Sep 2019 15:36:16 +0200
Source: r-cran-pcapp
Binary: r-cran-pcapp r-cran-pcapp-dbgsym
Architecture: source amd64
Version: 1.9-73-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-pcapp - Robust PCA by Projection Pursuit
Closes: 939566
Changes:
 r-cran-pcapp (1.9-73-1) unstable; urgency=medium
 .
   * Initial release (closes: #939566)
 2nd upload, i.e. the 1st non-premature one.
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Accepted paml 4.9j+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Sun, 10 Nov 2019 18:54:50 +0100
Source: paml
Architecture: source
Version: 4.9j+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 paml (4.9j+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Also cleaning binaries after build
   * Standards-Version: 4.4.1
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Accepted canu 1.9+dfsg-1 (source) into unstable

[Steffen Moeller]

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Date: Sun, 10 Nov 2019 11:12:40 +0100
Source: canu
Architecture: source
Version: 1.9+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 canu (1.9+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * debhelper-compat 12
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Accepted r-cran-kaos 0.1.1-1 (source all) into unstable, unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 20 Sep 2019 15:18:17 +0200
Source: r-cran-kaos
Binary: r-cran-kaos
Architecture: source all
Version: 0.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-kaos - Encoding of Sequences Based on Frequency Matrix Chaos
Closes: 940826
Changes:
 r-cran-kaos (0.1.1-1) unstable; urgency=medium
 .
   * Initial release (closes: #940826)
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Accepted r-bioc-dada2 1.12.1+dfsg-1 (source amd64) into unstable, unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Wed, 11 Sep 2019 22:48:09 +0200
Source: r-bioc-dada2
Binary: r-bioc-dada2 r-bioc-dada2-dbgsym
Architecture: source amd64
Version: 1.12.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-bioc-dada2 - sample inference from amplicon sequencing data
Closes: 940061
Changes:
 r-bioc-dada2 (1.12.1+dfsg-1) unstable; urgency=medium
 .
   * Initial release (closes: #940061)
 Second upload fixing the copyright - thanks go to
 ftpadmin Thorsten for spotting this.
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Accepted r-cran-proc 1.15.3-2 (source amd64) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 20 Sep 2019 15:21:08 +0200
Source: r-cran-proc
Binary: r-cran-proc r-cran-proc-dbgsym
Architecture: source amd64
Version: 1.15.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-proc - Display and Analyze ROC Curves
Closes: 940832
Changes:
 r-cran-proc (1.15.3-2) unstable; urgency=medium
 .
   * Initial release (closes: #940832)
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Accepted kallisto 0.46.1+dfsg-1 (source) into unstable

[Steffen Moeller]

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Date: Fri, 08 Nov 2019 23:14:36 +0100
Source: kallisto
Architecture: source
Version: 0.46.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 kallisto (0.46.1+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted python-bx 0.8.5-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 08 Nov 2019 19:12:56 +0100
Source: python-bx
Architecture: source
Version: 0.8.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-bx (0.8.5-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted r-cran-gprofiler 0.7.0-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 08 Nov 2019 19:17:49 +0100
Source: r-cran-gprofiler
Architecture: source
Version: 0.7.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Changes:
 r-cran-gprofiler (0.7.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.0
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Accepted diamond-aligner 0.9.28+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Fri, 08 Nov 2019 19:28:00 +0100
Source: diamond-aligner
Architecture: source
Version: 0.9.28+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 diamond-aligner (0.9.28+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * One patch against upstream could go (-mnative no longer set)
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Accepted bcbio 1.1.7-1 (source all) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Sat, 19 Oct 2019 14:02:34 +0200
Source: bcbio
Binary: bcbio bcbio-doc python3-bcbio
Architecture: source all
Version: 1.1.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 bcbio  - toolkit for analysing high-throughput sequencing data
 bcbio-doc  - Documentation for RNAseq-workflows of bcbio(-nextgen)
 python3-bcbio - library for analysing high-throughput sequencing data
Changes:
 bcbio (1.1.7-1) unstable; urgency=medium
 .
   * New upstream version.
 .
   * Added directions to contrib to -doc and python- packages
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Accepted phyml 3:3.3.20190909-1 (source) into unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Wed, 06 Nov 2019 21:46:04 +0100
Source: phyml
Architecture: source
Version: 3:3.3.20190909-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 phyml (3:3.3.20190909-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Reported autogenerated files in archive to upstream
 (https://github.com/stephaneguindon/phyml/issues/113)
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Accepted biobambam2 2.0.147+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 06 Nov 2019 19:16:45 +0100
Source: biobambam2
Architecture: source
Version: 2.0.147+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Closes: 933937
Changes:
 biobambam2 (2.0.147+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
   * Upstream renamed conflicting binary (Closes: #933937)
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Accepted libmaus2 2.0.684-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Wed, 06 Nov 2019 14:51:15 +0100
Source: libmaus2
Architecture: source
Version: 2.0.684-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 libmaus2 (2.0.684-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted bedtools 2.29.0+dfsg-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 05 Nov 2019 21:41:22 +0100
Source: bedtools
Architecture: source
Version: 2.29.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bedtools (2.29.0+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Removed Chris' reproducible builds patch - upstream diverged too much
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Accepted python-xopen 0.8.4-1 (source) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 05 Nov 2019 15:57:31 +0100
Source: python-xopen
Architecture: source
Version: 0.8.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 python-xopen (0.8.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted python-cutadapt 2.6-1 (source all amd64) into unstable

[Steffen Moeller]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 30 Oct 2019 10:17:14 +0100
Source: python-cutadapt
Binary: cutadapt python3-cutadapt python3-cutadapt-dbgsym
Architecture: source all amd64
Version: 2.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 cutadapt   - Clean biological sequences from high-throughput sequencing reads
 python3-cutadapt - Clean biological sequences from high-throughput sequencing 
reads
Changes:
 python-cutadapt (2.6-1) unstable; urgency=medium
 .
   * Team upload
   * New upstream version
   * Now fetching sources from github
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Accepted python-dnaio 0.4-1 (source amd64) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 30 Oct 2019 11:30:18 +0100
Source: python-dnaio
Binary: python3-dnaio python3-dnaio-dbgsym
Architecture: source amd64
Version: 0.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 python3-dnaio - Python 3 library for fast parsing of FASTQ and FASTA files
Changes:
 python-dnaio (0.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted bedops 2.4.37+dfsg-1 (source) into unstable

[Steffen Moeller]

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Format: 1.8
Date: Wed, 23 Oct 2019 16:44:58 +0200
Source: bedops
Architecture: source
Version: 2.4.37+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Changes:
 bedops (2.4.37+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version - adjusted patches
   * Improving cleanup after build
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Accepted r-cran-randomglm 1.02-1-1 (source amd64) into unstable, unstable

[Steffen Moeller]

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Hash: SHA256

Format: 1.8
Date: Sun, 15 Sep 2019 13:35:35 +0200
Source: r-cran-randomglm
Binary: r-cran-randomglm
Architecture: source amd64
Version: 1.02-1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-randomglm - Random General Linear Model Prediction
Closes: 940304
Changes:
 r-cran-randomglm (1.02-1-1) unstable; urgency=medium
 .
   * Initial release (closes: #940304)
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Accepted r-cran-jrc 0.1.1-1 (source all) into unstable, unstable

[Steffen Moeller]

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Format: 1.8
Date: Mon, 16 Sep 2019 11:44:12 +0200
Source: r-cran-jrc
Binary: r-cran-jrc
Architecture: source all
Version: 0.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Steffen Moeller 
Description:
 r-cran-jrc - Exchange Commands Between R and 'JavaScript'
Closes: 940480
Changes:
 r-cran-jrc (0.1.1-1) unstable; urgency=medium
 .
   * Initial release (closes: #940480)
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r-cran-jrc_0.1.1-1.debian.tar.xz
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r-cran-jrc_0.1.1-1_all.deb
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r-cran-jrc_0.1.1-1_amd64.buildinfo

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