Bug#659964: ITP: proftmb -- per-residue prediction of bacterial transmembrane beta barrels

2012-02-15 Thread Andreas Tille
Just for those who might not read debian-devel. Laszlo, many thanks for including it straight into the tasks file which saves me some work! (I sometimes wished others would follow your example.) Kind regards Andreas. - Forwarded message from Laszlo Kajan lka...@rostlab.org -

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Luis Ibanez
On Mon, Feb 13, 2012 at 5:38 PM, Andreas Tille andr...@an3as.eu wrote: On Mon, Feb 13, 2012 at 04:45:04PM -0500, Bhaskar, K.S wrote: If gtm_version is set, it does not download anything.  So, for installing a GT.M binary that is built from source, Luis can simply use the gtminstall script.

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Andreas Tille
Hi Luis, On Wed, Feb 15, 2012 at 08:20:14AM -0500, Luis Ibanez wrote: Using the ./pro/gtminstall script was almost too easy:-) Here is how the rules file looks like now: override_dh_auto_install: ./pro/gtminstall --utf8 default --installdir $(CURDIR)/debian/tmp Hmmm:

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Luis Ibanez
On Wed, Feb 15, 2012 at 9:28 AM, Andreas Tille andr...@an3as.eu wrote: Hi Luis, On Wed, Feb 15, 2012 at 08:20:14AM -0500, Luis Ibanez wrote: Using the ./pro/gtminstall script was almost too easy    :-) Here is how the rules file looks like now: override_dh_auto_install:      

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Luis Ibanez
On Wed, Feb 15, 2012 at 9:43 AM, Luis Ibanez luis.iba...@kitware.com wrote: On Wed, Feb 15, 2012 at 9:28 AM, Andreas Tille andr...@an3as.eu wrote: Hi Luis, On Wed, Feb 15, 2012 at 08:20:14AM -0500, Luis Ibanez wrote: Using the ./pro/gtminstall script was almost too easy    :-) Here is how

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Andreas Tille
On Wed, Feb 15, 2012 at 09:43:44AM -0500, Luis Ibanez wrote: Did you get this message as a result of running debuild ? Actually pdebuild (because this ensures english error messages as a side effect). I was working on the assumption that debuild goes through a sequence of * configure *

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Andreas Tille
On Wed, Feb 15, 2012 at 10:03:35AM -0500, Luis Ibanez wrote: More on this, I just reran debuild (still using the -I- option), to attempt to replicate the installation stage. In my case, it find ./pro/gtminstall, just fine, but it has trouble finding the configure file. So, something

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Karsten Hilbert
On Wed, Feb 15, 2012 at 04:29:16PM +0100, Andreas Tille wrote: As a last resort for the *initial* packaging it might work out. Once we are doing the real packaging we should not try such dirty tricks. Now that we can generate a mumps compiler by way of compiling only C code I wonder whether

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Luis Ibanez
On Wed, Feb 15, 2012 at 11:49 AM, Karsten Hilbert karsten.hilb...@gmx.net wrote: On Wed, Feb 15, 2012 at 04:29:16PM +0100, Andreas Tille wrote: As a last resort for the *initial* packaging it might work out.  Once we are doing the real packaging we should not try such dirty tricks. Now that

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Karsten Hilbert
On Wed, Feb 15, 2012 at 12:35:35PM -0500, Luis Ibanez wrote: As a last resort for the *initial* packaging it might work out.  Once we are doing the real packaging we should not try such dirty tricks. Now that we can generate a mumps compiler by way of compiling only C code I wonder

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Andreas Tille
On Wed, Feb 15, 2012 at 06:43:59PM +0100, Karsten Hilbert wrote: I believe Andreas was using initial as in version 0.1 of the packaging, e.g. the first quick and dirty way of getting it done, and then revising it to follow better practices and cleaner methods to become a version 1.0.

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Andreas Tille
On Wed, Feb 15, 2012 at 04:29:16PM +0100, Andreas Tille wrote: The problem is that *my* fis-gtm_5.4-002B.orig.tar.gz tarball does not contain the file fis-gtm-src-extras/pro/gtminstall. Should I recreate the orig.tar.gz??? I recreated the tarball now and can confirm that this file is just

Re: [MoM]: r9659 - trunk/packages/fis-gtm/fis-gtm/trunk/debian

2012-02-15 Thread Karsten Hilbert
On Wed, Feb 15, 2012 at 09:45:51PM +0100, Andreas Tille wrote: As far as I understood the resulting C files only work for a specific version and not for an upgrade. Regardless of whether that is actually the case - you are right, this is quite possible. Even if it would simply be that later

Re: Source code of phyutility

2012-02-15 Thread Stephen Smith
Hi Andreas, Derby requirement should be gone. Hope that helps and let me know if you run into any other issues. Take care, Stephen On 01/31/2012 10:21 AM, Andreas Tille wrote: Hi Stephen, On Tue, Jan 31, 2012 at 09:52:32AM -0500, Stephen Smith wrote: No problems. How about I just change it