On Thu, Mar 15, 2012 at 01:06:22PM +0900, Charles Plessy wrote:
Author: plessy
Date: 2012-03-15 03:59:48 + (Thu, 15 Mar 2012)
New Revision: 1
Hi all,
I just realised that our Subversion repository passed its 10,000th commit !
Cool. We might start betting about when we will
On Thu, Mar 15, 2012 at 08:52:18AM +0900, Charles Plessy wrote:
Because data it not copyrightable, I would like to keep on using and
distributing the protein sequence files from the UniProt consortium that I
found in the emboss and bioperl packages, disreagarding their license, CC
2012/3/14 Andreas Tille andr...@an3as.eu:
Sure - just commit to git and we will check and sponsor it.
Great!
Additional remark: This is obviosely not the usual ITP template. When
issuing ITP bugs you should use
reportbug wnpp
I did, but I didn't CC debian med list.
Just share your
Le 3/15/12 8:49 AM, Mike Dupont a écrit :
Hi there,
I pulled the packaging from svn,
svn co svn://svn.debian.org/svn/debian-med/trunk/packages/fis-gtm
http://svn.debian.org/svn/debian-med/trunk/packages/fis-gtm
dpkg-buildpackage is failing for the packages, and also the
Hi,
for the sake of interest I did a Google search for
free bioinformatics software
and it seems we are not really relevant because under 2.740.000 results
we are not amongst the first 30 hits. Even whan adding Linux as
additional term the 2.170.000 results do not contain a direct link to
yeah... I guess
http://www.debian.org/devel/debian-med/
must be adjusted. What about extending
The goal of Debian Med is a complete system for all tasks in medical
care which is built completely on free software.
The goal of Debian Med is a complete free and open system for all tasks in
Agreed. And then there is this ever-lasting issue about the uncertainty
what our home page should be.
Personally, I do not mind to leave much of the direct user interaction
with BioLinux, much like Ubuntu taking a lot from us. I am more
concerned about the synchronicity of our packaging.
So, once
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Agreed. And then there is this ever-lasting issue about the uncertainty
what our home page should be.
yeah -- I always just google debian-med and choose one which fits me
best
IMHO ideally it should be something easy to remember e.g.
med.debian.net ? ;)
--
On 03/15/2012 02:36 PM, Yaroslav Halchenko wrote:
Agreed. And then there is this ever-lasting issue about the uncertainty
what our home page should be.
yeah -- I always just google debian-med and choose one which fits me
best
:) I just use (some of) the packages ...
IMHO ideally it should
IMHO ideally it should be something easy to remember e.g.
med.debian.net ? ;)
And bio.debian.net as an alias :) Just kidding. Somewhat. I would
support your suggestion.
;-)
My hunch is that we need an exchange about the practical side of the
packages more to educate our users and
Le Wed, Mar 14, 2012 at 04:51:46PM -0400, Laurent Parenteau a écrit :
The instructions mentioned are :
...
debcheckout --user username ssh://
svn.debian.org/debian-med/trunk/packages/package/trunk package
...
For read-only access, remove the --user option.
...
But that is not enough.
On 03/15/2012 03:09 PM, Yaroslav Halchenko wrote:
IMHO ideally it should be something easy to remember e.g.
med.debian.net ? ;)
And bio.debian.net as an alias :) Just kidding. Somewhat. I would
support your suggestion.
;-)
My hunch is that we need an exchange about the practical side
in neuroimaging field we have a portal http://www.nitrc.org/ which is
used by many projects to host/distribute their code/data/etc. So
neuro.debian.net package pages (e.g.
http://neuro.debian.net/pkgs/ants.html ) backlink to blends pages and
NITRC pages. also on NITRC side we have
Hi Andreas,
Oh sorry, I thought I posted my results but apparently not! The upgrade was a
no go, everything download and installed okay but upon reboot the machine
froze. If I get a chance then I will try to install the testing distribution.
In the meantime, I've been working with upstream
another way to promote Debian-Med would be to point people to it when
appropriate, e.g. consider
http://stackoverflow.com/questions/2994109/what-do-you-think-is-the-best-language-for-bioinformatics
so -- share your view (Perl? Python?), point to Debian-Med task page as
the source where to get it
Hi Scott,
[Hint: there is no need to CC me when posting to the list]
On Thu, Mar 15, 2012 at 10:22:27AM -0500, Scott Christley wrote:
The upgrade was a no go, everything download and installed okay but upon
reboot the machine froze.
Hmmm, does not sound good. But you seem to have tried
On Thu, Mar 15, 2012 at 08:52:42AM -0400, Yaroslav Halchenko wrote:
The goal of Debian Med is a complete free and open system for all tasks in
medical
care and research. To achieve this goal Debian Med integrates related
free and open source software for medical imaging, bioinformatics,
Hi,
On Thu, Mar 15, 2012 at 02:15:16PM +0100, Steffen Möller wrote:
Agreed. And then there is this ever-lasting issue about the uncertainty
what our home page should be.
IMHO the reason for success of Debian Med is the fact that it is
perfectly integrated inside Debian. To stress this fact I
maintaining it?...
what I had in mind is just a short/memorable entry point for debian-med
project.
From there it could point/redirect/frame/whatever you like to the 'home
page' of the debian med project... which is which (I guess the first one
but not 100% sure ;) )
Le 15 mars 2012 à 15:09, Yaroslav Halchenko a écrit :
IMHO ideally it should be something easy to remember e.g.
med.debian.net ? ;)
And bio.debian.net as an alias :) Just kidding. Somewhat. I would
support your suggestion.
;-)
My hunch is that we need an exchange about the
Le 15 mars 2012 à 19:57, Andreas Tille a écrit :
On Thu, Mar 15, 2012 at 08:52:42AM -0400, Yaroslav Halchenko wrote:
The goal of Debian Med is a complete free and open system for all tasks in
medical
care and research. To achieve this goal Debian Med integrates related
free and open
Le 15 mars 2012 à 20:26, Yaroslav Halchenko a écrit :
http://www.debian.org/devel/debian-med/
http://debian-med.alioth.debian.org/
http://wiki.debian.org/DebianMed
Yes there are too many websites. I'm lost between all these.
Do we really have to keep them all ?
Can't we make a unique one
Le 14 mars 2012 à 09:34, Luis Rivas a écrit :
Hi!
I'd like you to know that I'm working on packaging Pesco, a cognitive
stimulation tool, and I would like to propose it for Debian Med. I
think Pesco can fit in the rehabilitation task, and if you find it of
interest for Debian Med I can
minor comment -- I believe we would not be able to get
med.debian.org but any DD could easily register any domain at
debian.net, e.g. med.debian.net
Can't we make a unique one easily editable (like wiki) ? with redirects like:
http://med.debian.org/ -
Le Thu, Mar 15, 2012 at 09:53:47PM +0100, Eric MAEKER a écrit :
Le 15 mars 2012 à 20:26, Yaroslav Halchenko a écrit :
http://www.debian.org/devel/debian-med/
http://debian-med.alioth.debian.org/
http://wiki.debian.org/DebianMed
Yes there are too many websites. I'm lost between all
Le Thu, Mar 15, 2012 at 07:57:22PM +0100, Andreas Tille a écrit :
meta name=keywords content=...
Hmmm, I have no idea how to tweak this into WML - Charles, any idea
or do we need to ask debian-www team?
Hi Andreas,
I searched through the source of the whole Debian website, and did not
yeah -- most probably it is the case indeed that they are useless...
thanks for the wikilink
e.g. for neurodebian we have 'debian neuroscience' keywords and
google returns neurodebian only 4th (first one is
http://blends.alioth.debian.org/science/tasks/neuroscience-cognitive
;-))
so my guess that
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