Re: Re: Update on Trinityrnaseq packaging

On Mon Feb 16 2015 at 2:02:12 AM "Steffen Möller" wrote: > > Hi Michael, > > > > On Mon Feb 16 2015 at 5:46:42 PM Andreas Tille > wrote:Hi Michael, > > On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: > > >> I had some quick look into this and did some changed (please pull). > >>

Re: Update on Trinityrnaseq packaging

On Mon Feb 16 2015 at 11:09:37 AM Andreas Tille wrote: > Hi Michael, > > On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: > > To-do: > > dependencies needing review & uploading to Debian: > > - [ ] libjung-java > Ready for sponsoring > > - [ ] rsem > Has a dependency that I jus

Bug#778589: ITP: express -- Streaming quantification for high-throughput sequencing

Package: wnpp Severity: wishlist Owner: Debian Med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: express Version : 1.5.1 Upstream Author : Adam Roberts & Lior Pachter * URL : http://bio.math.berkeley.edu/eXpress/index.ht

Bug#778587: ITP: r-cran-blockmodeling -- Generalized and classical blockmodeling of valued networks

Package: wnpp Severity: wishlist Owner: Debian Med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: r-cran-blockmodeling Version : 0.1.8 Upstream Author : Ales Ziberna * URL : http://cran.fhcrc.org/web/packages/blockmodelin

Bug#778586: ITP: r-bioc-ebseq -- R package for RNA-Seq Differential Expression Analysis

Package: wnpp Severity: wishlist Owner: Debian Med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: r-bioc-ebseq Version : 1.6.0 Upstream Author : Ning Leng * URL : https://www.biostat.wisc.edu/~kendzior/EBSEQ/ * License

Aw: Re: Update on Trinityrnaseq packaging

Hi Michael,   > On Mon Feb 16 2015 at 5:46:42 PM Andreas Tille wrote:Hi >Michael, On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: >> I had some quick look into this and did some changed (please pull). >> Thanks for the changes.  I realised that some large files are installed i

Bug#778578: ITP: rsem -- RNA-Seq by Expectation-Maximization

Package: wnpp Severity: wishlist Owner: Debian Med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: rsem Version : 1.2.19 Upstream Author : Bo Li * URL : http://deweylab.biostat.wisc.edu/rsem/ * License : GPL-3 Pr

Re: Update on Trinityrnaseq packaging

On Mon Feb 16 2015 at 5:46:42 PM Andreas Tille wrote: > Hi Michael, > > On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: > > > > To-do: > > dependencies needing review & uploading to Debian: > > ... > > - [ ] transdecoder > > I had some quick look into this and did some changed (pl

Re: plink1.9_1.90~b3b-150117-1_amd64.changes REJECTED

Hi Andreas, 2015-02-16 8:58 GMT+01:00 Andreas Tille : > Did you pushed? Git log only knows changes up to > > commit 2ff0e3cf94c30ab830927b8761f18d18337f1cd4 > Author: Dylan Aïssi > Date: Thu Feb 5 09:10:25 2015 +0100 > My commit for the correction of d/copyright was 3 commits before this. T

Re: Update on Trinityrnaseq packaging

Hi Michael, On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: > > To-do: > dependencies needing review & uploading to Debian: > ... > - [ ] transdecoder I had some quick look into this and did some changed (please pull). I realised that some large files are installed into /usr/

Re: Update on Trinityrnaseq packaging

Hi Michael, On Mon, Feb 16, 2015 at 07:09:18AM +, Michael Crusoe wrote: > To-do: > dependencies needing review & uploading to Debian: > - [ ] libjung-java > - [ ] rsem > - [ ] express > - [ ] transdecoder OK, just ping me if one or more are ready for sponsering. > - [ ] jaligner Just upload