Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-19 Thread Afif Elghraoui
Hi, Andreas, على الثلاثاء 19 نيسـان 2016 ‫02:20، كتب Andreas Tille: > > I'd like to come back to this plan: > > On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: >>> However, even if we have discussed this before the situation is that if >>> we recommend biologists to install

Re: orthanc-imagej 1.1

2016-04-19 Thread Andreas Tille
Hi Sébastien, On Tue, Apr 19, 2016 at 11:30:53AM +0200, Sebastien Jodogne wrote: > >For me the move is not urgent if the issue above is no real problem for > >you. > > OK, so I propose to move the package to Git. Done.[1] > I don't know how to do the move by myself (as I'm not a Debian

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Andreas Tille
Hi Fabian, On Tue, Apr 19, 2016 at 02:59:15PM +0200, Fabian Klötzl wrote: > >>> Cool. Just ping me for sponsering. > >> > >> I guess it makes sense, to move the packaging to git, first. > > > > Huh? Its at > > > > git://anonscm.debian.org/debian-med/mugsy.git > > Yeah, but you ported

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
On 19.04.2016 14:53, Andreas Tille wrote: > On Tue, Apr 19, 2016 at 02:40:34PM +0200, Fabian Klötzl wrote: I have some extra patches for those tools, making them up to ten times faster. Will commit in due course. >>> >>> Cool. Just ping me for sponsering. >> >> I guess it makes sense,

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Andreas Tille
On Tue, Apr 19, 2016 at 02:40:34PM +0200, Fabian Klötzl wrote: > > Yeah, I was lucky that “improving mugsy” was supposed to be my next big > project at work. Little did we know I had to get past “compiling” first. :-) > >> I have some extra patches for those tools, making them up to ten times

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
Hi, On 19.04.2016 14:03, Andreas Tille wrote: > On Tue, Apr 19, 2016 at 12:29:59PM +0200, Fabian Klötzl wrote: >> Hi Andreas, >> >> I spent the last few weeks meandering in the murky marshes of the mugsy >> source code; It is a monstrosity. >> >> [ … lots of whining … ] > > Thanks a lot for the

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
Hi Andreas, I spent the last few weeks meandering in the murky marshes of the mugsy source code; It is a monstrosity. Before answering to your individual points I'd like to stress that I *literally* spend days trying to compile mugsy with seqan 1.3 which comes with Ubuntu 14.04 LTS. A hundred

Re: orthanc-imagej 1.1

2016-04-19 Thread Sebastien Jodogne
Hello, Thus my personal rule is: If tarball is not identical to download move to Git for packaging. [...] For me the move is not urgent if the issue above is no real problem for you. OK, so I propose to move the package to Git. I don't know how to do the move by myself (as I'm not a Debian

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-19 Thread Andreas Tille
Hi Afif, I'd like to come back to this plan: On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: > > However, even if we have discussed this before the situation is that if > > we recommend biologists to install med-bio and med-bio-dev they end up > > with an installation without