Re: Remaining issue with gbrowse - any help (Was: Urgent call to BioPerl users (Was: Bug#848236: src:gbrowse: ...)

2017-01-15 Thread Andreas Tille
Hi Lincoln, On Sun, Jan 15, 2017 at 04:25:46PM -0500, Lincoln Stein wrote: > The bug in the memory adaptor that Scott found turns out to have been from > using the old perl 1.6.9 installed by the Debian package. Updating to 1.7.1 > (1.007001) fixes the problem. > > I have merged all GBrowse chang

Re: pbcommand new upstream

2017-01-15 Thread Afif Elghraoui
على السبت 14 كانون الثاني 2017 ‫21:42، كتب Sascha Steinbiss: > OK, thanks for the confirmation. I’ll update to the latest version of > pbcommand then. Many thanks for updating pbcommand--but don't forget to push the final changes and tag. :) regards Afif -- Afif Elghraoui | عفيف الغراوي http

Re: Second Conference of Research Software Engineers: Sep 07-08, 2017

2017-01-15 Thread adam.bogacki
Sorry, I can't make it - but my postgraduate degree was entirely due to free softwara (aka debian) so you have my best wishes for the proceedings. Regards, Adam Bogacki, adam.boga...@clear.net.nz - Original Message Follows - > Hello all, > > As you all probably know, there is a huge ne

Second Conference of Research Software Engineers: Sep 07-08, 2017

2017-01-15 Thread Michael Crusoe
Hello all, As you all probably know, there is a huge need for sustainable community maintenance of research software; and I think Debian is the logical foundation for such efforts due to its distributed nature and extensive technical & social infrastructure** To help make this a reality I urge an

Bug#851488: ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework

2017-01-15 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-gffutils Version : 0.8.7.1 Upstream Author : Ryan Dale * URL : http://daler.github.io/gffutils/ * License : MIT Programming Lang: Python Description : Work with GFF and GTF

Re: libzstd 1.1.2 contains embedded zlib fork

2017-01-15 Thread Sascha Steinbiss
Hi Kevin, thanks for your email. >> I was looking to update libzstd to the current upstream version 1.1.2. >> Besides some minor changes to the patches I had to make, I also noticed that >> it now includes an embedded copy of some zlib code, which -- according to the >> inline comments -- was ada