Re: Please consider a more convenient versioning of your download tarball

2017-02-07 Thread Andreas Tille
Hi again, I wonder if you understood the hint I've recently sent you. At least the fact that you released a new version tarball with the same version scheme which diverges from every project I've seen before makes me think that you did not noticed my mail. Or may be its since I just forgot to po

Bug#851358: marked as done (ITP: python-pybedtools -- Python wrapper around BEDTools for bioinformatics work)

2017-02-07 Thread Debian Bug Tracking System
Your message dated Wed, 08 Feb 2017 07:00:15 + with message-id and subject line Bug#851358: fixed in python-pybedtools 0.7.8-1 has caused the Debian Bug report #851358, regarding ITP: python-pybedtools -- Python wrapper around BEDTools for bioinformatics work to be marked as done. This means

Bug#851488: marked as done (ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework)

2017-02-07 Thread Debian Bug Tracking System
Your message dated Wed, 08 Feb 2017 07:00:14 + with message-id and subject line Bug#851488: fixed in python-gffutils 0.8.7.1-1 has caused the Debian Bug report #851488, regarding ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework to be marked as done. This m

Patching fermi-lite to enable packaging libSeqLib

2017-02-07 Thread Andreas Tille
Hi, to package the latest version of freebayes (version 1.0.2 is in new, latest upstream is 1.1) a new library libSeqLib is needed. I started with the packaging[1] and managed to build it without the patched code copy of fermi-lite. SeqLib upstream was doing some patching since bwa and fermi-lit

Popcon graphics - ideas for enhancement?

2017-02-07 Thread Andreas Tille
Hi, I'd like to throw some rough idea in. When looking on our packages that have currently more than 50 votes on the popcon graph: https://qa.debian.org/popcon-graph.php?packages=emboss+pymol+rasmol+clustalx+gbrowse+ncbi-tools6+r-bioc-limma+njplot+perlprimer+samtools+ncbi-blast%2B+jmol+grom

About storing edam files in Debian packaging

2017-02-07 Thread Andreas Tille
Hi Matus and Steffen, I was again stumbling upon totally broken edam yaml files (bowties and bowtie2 was totally broken, I fixed freecontact and clustalo which had "topics" instead of "topic" and were breaking UDD import due to this). To verify how many other edam files might be affected I did so