Hi Andreas,
I made some changes and will push them soon. Add manpages for scripts,
changes in testsuite etc. But when writing manpages, I realize that
deepnano uses some files under nets_data/ in default arguments.
in source code:
parser.add_argument('--template_net', type=str, default="nets_data/map6temp.
npz")
parser.add_argument('--complement_net', type=str, default=
"nets_data/map6comp.npz")
parser.add_argument('--big_net', type=str, default="nets_data/map6-2d-
big.npz")
these .npz files is python numpy saves. And I think, they use different
reads
according to this issue[1]. What can we do for this defaults? (Quilt patch?)
Are there anything else I can do for this program until we get a response
from
developer?
Regards
[1] https://bitbucket.org/vboza/deepnano/issues/4/deepnano-
with-metrichor-bad-input-argument
2017-02-15 17:06 GMT+03:00 Andreas Tille <andr...@an3as.eu>:
> Hi,
>
> On Wed, Feb 15, 2017 at 04:36:36PM +0300, Çağrı ULAŞ wrote:
> > What exactly did you plan in connection with the poretools package?
>
> I do not plan anything with poretools.
>
> > In deepnano at debian/deepnano-data-files/test_data/ , there are 3 gz
> files.
> > These files are copied from poretools source. Thanks to Afif,
> poretools-data
> > package is currently present in sid. So we can remove these files from
> > deepnano-data and use poretools-data, deepnano-data for testing.
>
> So do you want to do this in Git?
>
> > deepnano-data will only contain nets_data/ .
>
> Sounds good.
>
> > > I have fixed the deepnano debian/control file a bit (see my last
> > > commits) and think a manpage could be written using help2man.
> >
> > Ok.
> >
> >
> > > How do we want to proceed to finalise the MoM project?
> >
> > I think, package is usable but still no version tag on it. I'm going to
> > create an issue
> > on bitbucket. Maybe get a response from there.
>
> Good.
>
> Please adapt the test of deepnano to avoid duplicated data files and
> write a manpage using help2man. As a hint: I've written a script[1]
> which you can put into the debian/ dir replace "<PROGNAME>" (if there
> are more binaries you need to copy the according paragraph). Than
> install the preliminary package on your local machine and run
>
> debian/createmanpages
>
> May be you need to adapt --help-option to fit what the program expects.
>
> Hope this helps.
>
> Kind regards
>
> Andreas.
>
>
> [1] https://anonscm.debian.org/viewvc/debian-med/trunk/helper-
> scripts/createmanpages?view=markup
>
> --
> http://fam-tille.de
>
--
*Çağrı ULAŞ*
about.me/cagriulas
