Hi Andreas,
I am having trouble reproducing the issue locally, but reading between
the lines of the template mess, the solution might be as simple as
defining ~KarkkainenBlockwiseSA as noexcept:
~KarkkainenBlockwiseSA() noexcept {
…
}
The compiler complains, because in C++11 autom
Hi,
I'm writing you on behalf of the Debian Med team which is a group inside
Debian with the objective to package free software with relevance in
biology and medicine for official Debian. As you might possibly know we
have created packages also from gmap as you can see on our so
called tasks biol
Hi Fabian,
On Mon, Sep 04, 2017 at 04:22:43PM +0200, Fabian Klötzl wrote:
> > Will do. Forgot to mention to mention that the build fails at the unit
> > tests now. ☺
This issue is solved now. I provided some needed binaries in
libvcflib-tools under /usr/bin now.
> Done. Upstream already promise
On 04.09.2017 13:38, Fabian Klötzl wrote:
>
> On 04.09.2017 13:20, Andreas Tille wrote:
>> Fully ACK. Would you volunteer to create an issue in htslib bug tracker.
>>
>>> Btw, I had to add -std=c++11 for a successful build.
>>
>> Seems you have build the package locally. Would you mind pushin
Hi,
I've moved bowtie from SVN to Git[1] and injected the packaging for the
latest upstream version. Unfortunately the build ended in:
...
g++ -w -O3 -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both -DWITH_TBB
-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=.=.
-fstack-protector-stro
On 04.09.2017 13:20, Andreas Tille wrote:
> Fully ACK. Would you volunteer to create an issue in htslib bug tracker.
>
>> Btw, I had to add -std=c++11 for a successful build.
>
> Seems you have build the package locally. Would you mind pushing your
> changes to Git?
Will do. Forgot to mentio
Hi Fabian,
On Mon, Sep 04, 2017 at 12:47:05PM +0200, Fabian Klötzl wrote:
> On 02.09.2017 14:54, Andreas Tille wrote:
> > The htslib issue remains the same but I have no idea how to fix it.
>
> The problem is that Allele.h defines a friend function called `json`
> residing in global namespace. Ho
Hi Andreas,
On 02.09.2017 14:54, Andreas Tille wrote:
> The htslib issue remains the same but I have no idea how to fix it.
The problem is that Allele.h defines a friend function called `json`
residing in global namespace. However, hts.h already defined a value of
an enum with the same name, thus
Hi Afif,
On Mon, Sep 04, 2017 at 12:00:08AM -0700, Afif Elghraoui wrote:
>
> Well, the build is still not successful. I've filed an issue upstream for one
> set of test failures [1] and there is another test failure due to a
> segmentation fault that needs some investigation.
If it would be on
Hi, Andreas,
On September 3, 2017 11:50:05 PM PDT, Andreas Tille wrote:
>Hi Afif,
>
>I noticed that you commited some promising changes. They are depending
>from bcftools 1.5 which is only in experimental. From my point of view
>it makes sense to move bcftools 1.5 to unstable to enable building
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