On Tue, Oct 31, 2017 at 03:04:35PM +0100, Olivier Sallou wrote:
> htsjdk and other dependent packages are marked for removal.
>
>
> The patch I uploaded recently (in git repo) fixed the testng issue, but
> I did not tested the package itself and I had to disable tests to get
> package done.
>
>
Could someone please sponcor Ghislain's packages since I can't currently?
On Tue, Oct 31, 2017 at 07:04:25PM +, Ghislain Vaillant wrote:
> Hi all,
>
> Could someone from the team sponsor the initial upload for simpleitk [1].
> Perhaps Gert (cc'd), since he is also involved with packaging ITK?
On Tue, Oct 31, 2017 at 06:03:41PM +0100, Olivier Sallou wrote:
> htsjdk and picard-tools test issues are gradle related.
> After some deeper tests and discussions with debian-java team, it
> appears the errors faced in testing (after the patches I proposed on
> testng) are related to the gradle ve
Hi all,
Could someone from the team sponsor the initial upload for simpleitk
[1]. Perhaps Gert (cc'd), since he is also involved with packaging ITK?
[1] https://anonscm.debian.org/cgit/debian-med/simpleitk.git
Cheers,
Ghis
htsjdk and picard-tools test issues are gradle related.
After some deeper tests and discussions with debian-java team, it
appears the errors faced in testing (after the patches I proposed on
testng) are related to the gradle version on debian.
Someone in java team should upgrade to an upper release
On 10/31/2017 03:05 PM, Olivier Sallou wrote:
> testng maven definition needs to be modified in build.graddle to match
> testng debian pom.
>
> Following patch fix the compilation for tests:
>
> --- a/build.gradle
> +++ b/build.gradle
> @@ -32,7 +32,7 @@
> compile 'com.github.samtools:htsjdk
testng maven definition needs to be modified in build.graddle to match
testng debian pom.
Following patch fix the compilation for tests:
--- a/build.gradle
+++ b/build.gradle
@@ -32,7 +32,7 @@
compile 'com.github.samtools:htsjdk:' + htsjdkVersion
//tools dependency for doclet requires s
htsjdk and other dependent packages are marked for removal.
The patch I uploaded recently (in git repo) fixed the testng issue, but
I did not tested the package itself and I had to disable tests to get
package done.
The patch indeed fix compilation issues, but introduce gradle testing
issues.
T
Hi everyone,
Could someone from the team sponsor the latest update to dcm2niix [1].
[1] https://anonscm.debian.org/cgit/debian-med/dcm2niix.git
Cheers,
Ghis
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