Re: bison help needed

2018-08-03 Thread Dan Kegel
Try --- a/debian/rules +++ b/debian/rules @@ -1,6 +1,7 @@ #!/usr/bin/make -f # debian/rules file for maude export DH_VERBOSE=1 +export DEB_CXXFLAGS_MAINT_APPEND=-fpermissive %: dh $@ but I wonder how many arguments yyparse and yyerror are really supposed to have; there may be a bit

Re: Bio-Linux

2018-08-03 Thread William McCaffery
Hi Tony, That sounds reasonable, especially if we want to keep them as discreet projects. If Andreas would be willing to set this up that would be great. As far as I can tell from the Debian documentation and what we've discussed, the complete set of Bio-Linux tasks would simply be Tim's

Re: bison help needed

2018-08-03 Thread Andreas Tille
On Fri, Aug 03, 2018 at 03:29:49PM +0500, Andrey Rahmatullin wrote: > > flex -t -p -p ./lexer.ll > lexer.cc > > -I (interactive) entails a minor performance penalty > > mv surface.c surface.cc > > mv: cannot stat 'surface.c': No such file or directory > > surface.cc surface.h: surface.yy >

Bug#890187: marked as done (ITP: racon -- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads)

2018-08-03 Thread Debian Bug Tracking System
Your message dated Fri, 03 Aug 2018 14:10:37 + with message-id and subject line Bug#890187: fixed in racon 1.3.1-1 has caused the Debian Bug report #890187, regarding ITP: racon -- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads to be marked as done.

Re: Bio-Linux

2018-08-03 Thread Tony Travis
On 31/07/18 19:50, William McCaffery wrote: > [...] > In regards to the suggestion of a separate source package, what would > that involve? Personally I don't think that having the name > med-bio-linux-desktop would be an issue, since, as far as I'm aware the > package will be mainly distributed

Re: Bio-Linux

2018-08-03 Thread Tony Travis
On 28/07/18 00:45, Andreas Tille wrote: > [...] > OK, I understood that full med-bio and med-bio-dev are to heavy for a > live system. Just for my personal understanding: Is Bio-Linux > targeting at live media *exclusively*? Hi, Andreas. Not exclusively, the "Bio-Linux" project has two

Re: What flavour of dindel to we want to provide?

2018-08-03 Thread Andreas Tille
Hi, On Mon, Jul 16, 2018 at 03:06:55PM +0200, Andreas Tille wrote: > > > This fork currently contains a patch to allow sequence data that > > > includes the 0x800 flag (supplementary alignment) from newer versions of > > > the SAM specification. It also removes the included copy of Boost