Re: mrtrix3 is "coming". Howto tests?

2018-09-07 Thread Yaroslav Halchenko
On Fri, 07 Sep 2018, Andreas Tille wrote: > > to recreate it from git tree. Without awareness of submodules, it would > > need > > to keep the delta for the entire submodule tree. Not sure if that is worth > > to > > breed across commits, since it would just keep adding those 16MB with

Re: Unicycler: trying to run tests during the build process

2018-09-07 Thread Andreas Tille
Hi Liubov, On Fri, Sep 07, 2018 at 08:25:18PM +0200, Liubov Chuprikova wrote: > I finally made some progress with unicycler (As you said it is mañana :D). > A couple of tests still fails, but the reason does not seem to be in > missing files as these tests just check running with --help option. I

Unicycler: trying to run tests during the build process

2018-09-07 Thread Liubov Chuprikova
Hi Andreas, I finally made some progress with unicycler (As you said it is mañana :D). A couple of tests still fails, but the reason does not seem to be in missing files as these tests just check running with --help option. I am going to take a closer look at this later. Is it OK how it builds

Re: Do you need more help with BioLinux tasks?

2018-09-07 Thread Andreas Tille
On Fri, Sep 07, 2018 at 03:48:05PM +0200, Steffen Möller wrote: > I had a look at the precursor of missing Debian packages at > https://salsa.debian.org/med-team/community/bio-linux/blob/master/debian-med_missings.txt > . That does not look too bad. Most of these seem to have license issues. >

Re: Do you need more help with BioLinux tasks?

2018-09-07 Thread Steffen Möller
I had a look at the precursor of missing Debian packages at https://salsa.debian.org/med-team/community/bio-linux/blob/master/debian-med_missings.txt . That does not look too bad. Most of these seem to have license issues. Qiime is something that we should have, and that we once kind of had thanks

Re: mrtrix3 is "coming". Howto tests?

2018-09-07 Thread Andreas Tille
Hi Yaroslav, On Thu, Sep 06, 2018 at 09:30:25AM -0400, Yaroslav Halchenko wrote: > > > > I do not think pristine-tar would work with git submodules, thus > > > requiring a delta of the size of the testing/data . > > > Pristine-tar has nothing to do with the structure of the git repository. > >