Outreachy- 2021

Hello everyone, I am Aditi. I was hoping to contribute to Debian this summer. The contribution period hasn't started yet but I was hoping if I could set up the project and read about it a little in advance. So, are there any specific pre-requisites or steps I need to take, or a particular starting

Re: guix-based installation of pigx-rnaseq - works

Hi, On Tue, 23 Feb 2021 at 21:28, Steffen Möller wrote: > sudo apt-get install guix > guix install pigx-rnaseq Thanks Vagrant! :-) And if I may, I would recommend this Debconf track: > We keep mentioning conda also the time,

Re: Urgent: Spades Update before freeze

On Fri, Feb 26, 2021 at 09:58:11PM +0200, Juhani Numminen wrote: > > I'm not really sure how this relates to the problem Juhani has > > described and unfortunately I'm currently lacking the time to > > work on this (due to real life things that weekend). > > Thanks for opening the issue. With the

Re: Urgent: Spades Update before freeze

Andreas Tille kirjoitti 26.2.2021 klo 17.14: Hi, there was an answer to the opened issue here: https://github.com/ablab/spades/issues/671#issuecomment-786692020 I'm not really sure how this relates to the problem Juhani has described and unfortunately I'm currently lacking the time to

Re: Urgent: Spades Update before freeze

Hi, there was an answer to the opened issue here: https://github.com/ablab/spades/issues/671#issuecomment-786692020 I'm not really sure how this relates to the problem Juhani has described and unfortunately I'm currently lacking the time to work on this (due to real life things that

Re: Urgent: Spades Update before freeze

Hi Juhani, thanks a lot for your attempt to help. Since I personally do not have the slightest idea of llvm I opened an issue upstream[3]. Kind regards Andreas. [3] https://github.com/ablab/spades/issues/671 On Fri, Feb 26, 2021 at 02:18:56PM +0200, Juhani Numminen wrote: > Hi all, >

[Request for review] rna-star

Hi Michael and other folks, The version 2.7.8a of rna-star which Steffen uploaded a couple of days ago seems to use intel intrinsics which leads unfortunately builds on non-amd64 Since simde is a good way to mitigate this, I tried using this -- on testing on a arm64 porter box, build goes green

Re: Urgent: Spades Update before freeze

Hi all, For context: The spades problems are because of non-dfsg ConvertUTF.cpp (and .h) coming from a local fork of LLVM. Lintian reports an error for that[1], so we would want to get the ConvertUTF.cpp removed from the package. Andreas Tille kirjoitti 18.1.2021 klo 19.42: Hi, thanks to a

Outreachy and GSoC projects for next season

Hi, the Debian Med project wants to mentor the following projects https://www.outreachy.org/apply/project-selection/#debian and