Andreas Tille writes:
> I had to exclude the test following MiltipleBuffers as well. Now the
> package builds also on Salsa CI. However, the autopkgtest fails[1].
> Do you have any more hints?
So I see. I've concocted and pushed two more patches, which in
conjunction yield much saner results
On 18.10.21 18:41, Rebecca N. Palmer wrote:
On 18/10/2021 08:15, Nilesh Patra wrote:
On Mon, Oct 18, 2021 at 01:32:30AM +0200, Steffen Möller wrote:
Is anyone continuing the update of
snakemake now?
@Rebecca, could you look into it now that pulp is done?
Currently, there is just a very few
On 18/10/2021 08:15, Nilesh Patra wrote:
On Mon, Oct 18, 2021 at 01:32:30AM +0200, Steffen Möller wrote:
Is anyone continuing the update of
snakemake now?
@Rebecca, could you look into it now that pulp is done?
Currently, there is just a very few failing tests -- I guess
most are due to some
Hi Julien,
I tried to build bppsuite 3.0.0 but it is seeking header files in
different places than in libbpp-phyl 2.4.1 which is packaged for Debian.
For instance the header files that reside in Bpp/Phyl/Tree.h are
seeked in Bpp/Phyl/Tree/Tree.h. I suspect you are using a higher
version of the
Hi Aaron,
Am Mon, Oct 18, 2021 at 07:55:18AM -0400 schrieb Aaron M. Ucko:
>
> Please look (much) earlier in the log for the actual error, in this case[1]
>
> CMake Error at src/sortmerna/CMakeLists.txt:15 (find_package):
> Could not find a package configuration file provided by "RocksDB"
Hi Andreas,
Sure, this looks like the exact same error you got while trying to build
my new sight version. I'll try to have a look at this tomorrow.
Cheers,
*Dr. Flavien BRIDAULT*
Director of Software Development
IRCAD France & IRCAD Africa
flavien.brida...@ircad.fr
Flavien,
can you provide any help here since you also are maintaining
camp?
Kind regards
Andreas.
Am Sat, Oct 16, 2021 at 12:07:26AM +0530 schrieb Nilesh Patra:
> On 10/15/21 9:27 PM, Andreas Tille wrote:
> > Hi Flavien,
> >
> > Am Fri, Oct 15, 2021 at 09:46:46AM +0200 schrieb Flavien
Andreas Tille writes:
> from time to time I'm stumbling upon cmake based project about this
> linker error ... and I always forget what to do. If anybody could have
> a look at sortmerna I would be happy.
Please look (much) earlier in the log for the actual error, in this case[1]
CMake
Hi Uros,
Am Mon, Oct 18, 2021 at 09:13:51AM + schrieb Uros Gaber:
>
> Please make sure that the library reference is "pthread" not "pthreads".
Thanks for the hint - but how can I approach this? Grep does not find the
string "pthreads" in the source tree.
Kind regards and thank you in any
Hi,
I wanted to update python-biom-format, but the build time test ends up in
FAILED biom/tests/test_table.py::TableTests::test_from_hdf5_custom_parsers - ...
FAILED
biom/tests/test_table.py::TableTests::test_to_hdf5_missing_metadata_sample
Any help would be welcome
Andreas.
--
Hi,
from time to time I'm stumbling upon cmake based project about this
linker error ... and I always forget what to do. If anybody could have
a look at sortmerna I would be happy.
Thank you
Andreas.
--
http://fam-tille.de
Hi Filippo,
you uploaded beads 1.1.19 and 1.1.20 but the watch file points to some
location[1] where only 1.1.18 is listed. The Homepage field even points
to some URL[2] where only 1.1.13 is advertised.
Could you please fix the watch file and Homepage (or at least point us
to the new location
On Mon, Oct 18, 2021 at 01:32:30AM +0200, Steffen Möller wrote:
> Hi Nilesh,
> Uploaded.
Thanks a lot, but,
You seemed to have done a binary upload, I now did a source-only so it migrates.
I also took the liberty to add myself to uploaders, since this is a LP based
package,
which I would be
Hi again,
Am Fri, Oct 15, 2021 at 08:16:52AM -0400 schrieb Aaron M. Ucko:
>
> The following "MiltipleBuffers" (sic) test needs a *lot* of memory -- at
> least 4G, quite possibly 8G if there's copying involved. As such, I
> suspect it simply ran afoul of the CI host's OOM killer.
I had to
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