a (cough… Google… non-free), on September 5 and October 5,
two and one months before the Freeze respectively.
Input from others, of course, is welcome. Or even doing it instead of me :)
Maintaining this task can be a good opportunity for newcomers to become
familiar with what Debian offers, etc
Hello everybody,
I am going ahead with BEDTools, and will ignore potentially missing
source for the artwork in the documentation.
I am also merging with the new upstream repository on GitHub. I am at the
middle of it, but will not finish today. After this, the debian work will be
on the branch
Le Tue, Nov 26, 2013 at 09:38:41AM +0900, Charles Plessy a écrit :
> Dear Aaron,
>
> I am contacting you because we have packaged FILO in Debian back in 2011 when
> the groupBy command had been removed from BEDTools. Since then, it has been
> added back to BEDTools, and the deve
rectly on UDD.
> Indeed, I noted that in
>
> http://blends.debian.net/packages-metadata/packages-metadata.tar.bz2
>
> the reference is still given with
>
> Volume: 8:20
Hi Gert,
the system refreshing this information is not yet repaired, sorry for this.
Have a nice da
Le Sun, Jan 19, 2014 at 12:58:38PM +0900, Charles Plessy a écrit :
>
> I just saw that the author of Aeskulap is active on GitHub and has a clone of
> Aeskulap there.
>
> https://github.com/pipelka/aeskulap
>
> It has no recent changes, but let me just try to push our
he fix for the bug above..
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas
Therefore, one of
the parsers must be wrong. My bet is rather in the Python side, because in my
understanding, a colon is not a special character if it is not followed by a
space.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian
Le Tue, Dec 24, 2013 at 11:36:04AM +0100, Olivier Sallou a écrit :
> Hi charles,
> seems we are concurrently updating picard-tools.
> Mine is over , I updated patches etc.. for release 1.105.
> I propose to put my updates, is it fine for you ?
Parfait ! Et joyeux Noël !
--
Charles
--
To UNSU
don the package altogether (I am also strongly against the
point of view that we make a work more Free by merely deleting its
documentation).
Have a nice day,
--
Charles Plessy
Illkirch-Graffenstaden, France
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
want to deliver software, not to nitpick on upstream sources.
So anybody, please feel free to update our bedtools package.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debi
Le Tue, Dec 10, 2013 at 11:56:08AM +0100, Andreas Tille a écrit :
>
> The actual source code is exclusively and explicitly mentioning a README
> file. I'd tempeted to include just this README file which is not in
> conflict with GPL IMHO.
>
> I now remember that we previously tried to contact Ca
nsed to the GPL-2+ in the CRAN package. If it was, it may be a
good news, that may allow the cufflinks package to move from non-free to main.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian
is a real peer review, and not a specialist
comittee :)
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trou
Le Sat, Dec 07, 2013 at 02:38:04PM +0100, Andreas Tille a écrit :
> Package: wnpp
> Severity: wishlist
> Owner: Andreas Tille
>
> * Package name: r-cran-locfit
> Version : 1.5-9.1
> Upstream Author : Catherine Loader
> * URL : http://cran.r-project.org/web/packages/loc
in “next-generation” sequencing and I would be happy
to give advices if you need.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
also on http://population-transcriptomics.org/
--
To UNSUBSCRIBE, email to debian-med
e option.
With this, anybody should be able to clone and build a Git package with
git-buildpackage.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
wi
tps://github.com/samtools/htslib
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact l
Le Tue, Nov 26, 2013 at 04:27:13PM +0100, Andreas Tille a écrit :
>
> Yes, that's known and was mentioned by Charles some time ago. However,
> if I understood correctly we need to change something in samtools
> packaging anyway and thus I could live for the moment with the samtools
> copy and mig
Le Mon, Nov 25, 2013 at 09:12:59PM +0100, Andreas Tille a écrit :
>
> I fully quoted your mail about htslib because we have a similar case
> where we could simply rely on a Git clone rather than a release tarball.
> If I should upgrade the package I would "simply" (probably my workflow
> is not th
ave a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Archive: htt
Le Fri, Nov 22, 2013 at 09:31:25AM +0100, Andreas Tille a écrit :
> On Fri, Nov 22, 2013 at 09:10:44AM +0100, Raphael Hertzog wrote:
> >
> > On Fri, 22 Nov 2013, Andreas Tille wrote:
> > > $ gbp-clone ssh://git.debian.org/git/debian-med/htslib.git
> > > $ cd htslib
> > > (debian/unstable) $ git br
Le Thu, Nov 21, 2013 at 11:26:24AM +0100, Andreas Tille a écrit :
> On Thu, Nov 21, 2013 at 05:29:26PM +0900, Charles Plessy wrote:
> >
> > gbp clone git.debian.org:/git/debian-med/htslib.git
>
> When doing `git-buildpackage` (which for sure includes the .git dir) I
>
Le Thu, Nov 21, 2013 at 09:00:48AM +0100, Andreas Tille a écrit :
>
> PS: Alioth is back online and I might have a look later this day if
> you would commit there.
Thanks a lot !
gbp clone git.debian.org:/git/debian-med/htslib.git
Cheers,
--
Charles
--
To UNSUBSCRIBE, email to debi
Le Wed, Nov 20, 2013 at 10:24:29PM +0100, Andreas Tille a écrit :
>
> without having checked out the repository and diving into it: Can you
> post a diff of the two build logs?
Hi Andreas,
here it is (attached). Could the problem be a side effect of the test suite ?
Cheers,
--
Charles
--- w
Does
anybody see why the hardening-no-relro is triggered when building in presence
of the .git directory ?
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with
ools will be built. I will transfer the repository on
Alioth, but for the moment, you can access the package on its mirror
on GitHub.
https://github.com/Debian/htslib/
Have a nice week-end,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Ja
Le Thu, Nov 14, 2013 at 04:59:21PM +0100, Andreas Tille a écrit :
> Ping,
>
> I really need the help of testers for the new glam packages I uploaded
> for review here
>
>http://blends.debian.net/tmp/packages/glam2/
>
> Any opinion would be very welcome.
Hi Andreas,
all of this is a lot of
Le Mon, Nov 11, 2013 at 08:21:28AM +0100, Andreas Tille a écrit :
> On Mon, Nov 11, 2013 at 08:45:09AM +0900, Charles Plessy wrote:
> >
> > Indeed, one would need to download it using apt-get source, or from the
> > upstream system for browsing Git repositories (here, G
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Hello everybody,
I intend to package the HTSlib, that some existing packages (samtools,
tabix) will need later.
Cheers,
-- Charles Plessy, Tsurumi, Kanagawa, Japan
Package name: htslib
Version : 0.2
Upstream Author
Le Sat, Nov 09, 2013 at 10:30:04AM +0100, Andreas Tille a écrit :
> On Sat, Nov 09, 2013 at 04:42:47PM +0900, Charles Plessy wrote:
>
> > Note that it does not contain the ‘pristine-tar’ and
> > ‘upstream’ branches, which are not particularly useful anymore.
>
> In any
Le Sat, Nov 09, 2013 at 11:42:18AM +0900, Charles Plessy a écrit :
>
> Would people object if I would simply create a debian branch of the upstream
> repositories from scratch and hence lose the commit history from the current
> source packages ?
For the Debian branch, it was not tha
that it is better if the communication, be it an upload or an
email, does not come from me; sorry for the inconvenience…
Thanks for your perseverance,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE,
would simply create a debian branch of the upstream
repositories from scratch and hence lose the commit history from the current
source packages ?
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE
depend on an “extra” package, it may be more straightforward to chose
“optional”.
In the case of the sections, libraries should be in the “libs” section so here
it is definitely the source package that has to be corrected.
By the way, the override disparities are a minor problem, so there is no nee
Le Thu, Oct 24, 2013 at 08:43:09AM +0200, Benjamin Eikel a écrit :
> Am Montag, 16. September 2013, 16:58:43 schrieb Benjamin Eikel:
> > Am Sonntag, 15. September 2013, 11:17:34 schrieb Charles Plessy:
> > > Le Fri, Sep 13, 2013 at 11:21:58AM +0200, Benjamin Eikel a écrit :
>
Le Tue, Oct 22, 2013 at 09:14:12AM +0200, Olivier Sallou a écrit :
> Hi charles,
> I fixed the compilation of picard-tools (I pushed theupdated to git repo).
>
> Do you want to make other tests/modifications or should I push the new
> release ?
Hi Olivier,
thanks for the fix, please go ahead wit
e output, they could become an interesting regression test for
Debian Med. This would be particularly useful as we have only limited
experience on doing bioinformatics on ARM platforms, while we do have serious
evidence that some of the programs we distribute are only reliable on amd64
(x86_64).
line:
/«PKGBUILDDIR»/build.xml:476: /«PKGBUILDDIR»/${env.JAVA6_HOME}/lib does not
exist.
Cheers,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject
ics on the top of the list, to not do so in a
misleading way.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubsc
Le Sat, Sep 14, 2013 at 11:07:50AM +0900, Charles Plessy a écrit :
>
> Our emboss-explorer package is currently broken with the latest Apache; I will
> try to do the migration today, so that we have at least one final working
> version in snapshot.debian.org, as a service to ou
would be to
summarise the result of your investigations in debian/README.source and
re-upload.
By the way, I also found the Munsell data in psychtoolbox-3, maybe
this can be mentionned as well.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian
, and just realised that it is also broken in Wheezy for other
reasons. Ouch :(
Many thanks to Amazon, James and Andreas for making this possible !
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to
Le Sat, Sep 14, 2013 at 11:07:50AM +0900, Charles Plessy a écrit :
>
> Our emboss-explorer package is currently broken with the latest Apache; I will
> try to do the migration today, so that we have at least one final working
> version in snapshot.debian.org, as a service to ou
updates recently. I hope that
it inspires new members and potential newcomers for joining this effort !
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with
Version: 6.6.0-1
Le Mon, Sep 09, 2013 at 04:54:51PM +0200, Andreas Tille a écrit :
>
> I wonder if there are volunteers to test EMBOSS packaging in Git. IMHO
> we should upload soonish to finally close #694908. I'll check the other
> bugs whether these are fixed in new upstream soon but some te
k that it is even better to
implement a versionned R API number.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe&quo
a (much simpler) work on line at http://clonotyper.branchable.com/
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscr
Hello everybody,
I have replaced our commit hook for Git by the new one installed by Raphael
Hertzog
on Alioth.
http://raphaelhertzog.com/2013/08/02/my-free-software-activities-in-july-2013/
I hope it brings only advantages.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http
Le Thu, Aug 01, 2013 at 12:23:58PM +0530, Faheem Mitha a écrit :
> On Thu, 1 Aug 2013, Charles Plessy wrote:
>
> >I received multiple enquiries about ggplot2, and I am very sorry
> >that I got confused and forgot to answer to yours.
>
> >I am also very sorry for the s
ome of the new pakcages that need to be introduced, which added a
long waiting period to the process. When they will be accepted in Debian,
ggplot2 will be updated a soon as possile.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagaw
Hello everybody,
there is a position open for a researcher in a colleague's research unit at
RIKEN in Yokohama:
(English) http://www.riken.jp/en/careers/researchers/20130612_2/
(Japanese) http://www.riken.jp/careers/researchers/20130612_2/
Cheers,
--
Charles Plessy
Debia
t; SVNDeleteRevision:
> URL: git://git.debian.org/debian-med/r-cran-ggplot2.git
> Comment: >
> This package is now managed in a Git repository.
Hi all,
I added the file to avoid forgetting later. Please revert if or
when you think it is appropriate.
Have a nice day,
--
Charles Plessy
n of ggplot2 in Debian.
Hi Benjamin,
I went ahead and uploaded r-cran-munsell with you as the Uploader. This
is needed before uploading r-cran-scales.
Do you intend to take care of further updates ?
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Ts
Le Tue, Jun 04, 2013 at 08:02:00AM +0900, Charles Plessy a écrit :
> Le Wed, Mar 13, 2013 at 03:41:19PM +0100, Ivo Maintz a écrit :
> >
> > I locally merged the (rare) differences from the git repository
> > with the svn repo.
>
> Dear Ivo,
>
> what are your
Dear Benjamin,
I am contacting you about work on a r-cran-scales. Are you still interested in
it ? If yes, please contact us on the Debian Med mailing list, so that we can
coordinate an upload. As you know, we need it to update ggplot2.
Have a nice Sunday,
--
Charles Plessy
Debian Med
Le Wed, Mar 13, 2013 at 03:41:19PM +0100, Ivo Maintz a écrit :
>
> I locally merged the (rare) differences from the git repository
> with the svn repo.
Dear Ivo,
what are your plans for ggplot2 now that Wheezy has been released ?
Currently, the ggplot2 Debian package is quite oudated, and its d
remove myself from the Uploader field of some packages
that I am not following closely. In parallel, I welcome more than ever others
to work on the packages I created (I know I have been a bit territorial some
times).
Cheers,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE
e date for
students to have proposals in a good shape to be submitted to the
organisations, so that there are some days left to solve potential problems.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIB
Hello everybody,
I added the following bullet points to the Debian Med section in the wiki page
"NewInWheezy":
* gbrowse: the generic genome browser
* more and more packages related to ''next-generation'' sequencing: bedtools,
bowtie, fastx-toolkit, tabix, tophat, vcftools, etc.
Please feel
s.debian.org/debian-cloud/2013/04/msg6.html
One key point is to chose one path among all the possible directions that this
project can take. Once this is done, it will be easier to design a small
contribution to start with.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://ww
Le Sat, Mar 30, 2013 at 03:25:52PM +0900, Charles Plessy a écrit :
>
> $ git push --mirror
> Counting objects: 5, done.
> Delta compression using up to 2 threads.
> Compressing objects: 100% (3/3), done.
> Writing objects: 100% (4/4), 4.97 KiB, done.
> Total 4 (delta
It looks like I should not have used --mirror, although I do not understand why
it seems to re-create the branches it deleted.
Please be careful before pulling
and let me know if there is something to repair.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/de
then the best is to have
them in a separate binary package, built from one or the other source package.
You will need to consider whether you will use a versionned dependancy or not.
Cheers,
Have a nice day,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-re
repositories ready for being used from Debian Med images.
Have a nice week-end,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe
ut it.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
is too heterogeneous to be
standardised yet. But this said, many other aspects such as branch names can
be standardised. (Actually, we are already following the main stream for
this).
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
Dear Ivo,
I see that you have injected r-cran-gtable, r-cran-scales and r-cran-ggplot2.
But r-cran-ggplot2 is alread packaged, and there is work ongoing on the two
others. Have you coordinated with the other contributors ?
http://bugs.debian.org/700862
Have a nice day,
--
Charles Plessy
Le Sat, Feb 23, 2013 at 10:34:00AM +0100, Andreas Tille a écrit :
> On Sat, Feb 23, 2013 at 05:30:23PM +0900, Charles Plessy wrote:
> > Simply booting a Wheezy image and typing 'apt-get install med-cloud'
> > definitely
> > does not need two month of full-time work
h as deleting the root
> EBS volume on Terminate in AWS). Beyond that I think we should now be
> looking to target Wheezy - is that a fair target, or would people like a
> Debian-med Squeeze AMI available as well?
Hi James,
I think that for Debian Med, Wheezy is definitely the target.
Have
Le Fri, Feb 22, 2013 at 09:04:12AM +0900, Charles Plessy a écrit :
>
> I would like to propose a bottom-up project with the goal of setting an
> infrastructure or workflow allowing one to build and use easily a Debian (Med)
> image where given bioinformatics tools are available
at it would be up to the
prospective students to propose a sensible design, and that in the absence of
something convincing the project will not start (that is: I do not intend to
propose a top-down implementation design).
What do you think ?
--
Charles Plessy
Debian Med packaging team,
: #700088.
+
+ -- Charles Plessy Sat, 09 Feb 2013 11:57:21 +0900
+
boxshade (3.3.1-7) unstable; urgency=low
* debian/install: Make sure boxshade executable will be installed
diff -Nru boxshade-3.3.1/debian/patches/remove-newlines.patch
boxshade-3.3.1/debian/patches/remove-newlines.patch
ll of them. This may be eased by pbuilder or schroot.
- /usr/share/doc/pbuilder/examples/rebuild/README
- http://wiki.debian.org/qa.debian.org/ArchiveTesting
Cheers,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a su
s
as a run-time package, and also Debian is currently frozen, so my activity of
uploading new versions is somewhat reduced.
Once the regression tests will be available as a run-time package, we can
disable them at build time, and move forward easier with the next updates.
Have a nice day,
--
tinfo/bioperl-l
- End forwarded message -
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listm
Le Wed, Dec 12, 2012 at 11:43:00AM +0100, Andreas Tille a écrit :
>
> OK. For those who care about the Git workflow in our team policy
> document[1]: Would you consider adding the way the Debian Octave team
> is handling the experimental branch to this document. (And if you agree
> in principle
ould only be in a system-wide and or user-wide
> gbp.conf file and not the one committed to the git repository.
Thanks for your suggestion !
I updated our group policy accordingly.
--
Charles Plessy
Illkirch-Graffenstaden, France
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.
Le Fri, Dec 21, 2012 at 09:32:21AM -0800, Diane Trout a écrit :
>
> I suspect that settings like export-dir or tarball-dir really shouldn't be in
> a repository. They seem specific to how you want to lay out your work
> directories.
Good point. How about the following:
Index: policy.xml
===
ince I am not a C programmer, I can
not help there. If you have time it would be great, otherwise, let's file
bugs in order to remember.
(PS: please let me know if it is useless to CC you in addition to answering
to the list)
Have a nice week-end,
--
Charles Plessy
Debian Med packagi
le
with subversion, and that I find useful, but that service is not crucial at
all.
Have a nice week-end,
--
Charles Plessy
Illkirch-Graffenstaden, France
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact lis
Le Wed, Dec 19, 2012 at 06:22:45PM +0900, Charles Plessy a écrit :
>
> you are very welcome to take over the work on pysam
Together with Dominique of course.
Cheers,
--
Charles
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe".
ication:
http://anonscm.debian.org/viewvc/secure-testing/data/embedded-code-copies
You are also welcome to contribute to our other packages !
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Illkirch-Graffenstaden, France
--
To
Le Fri, Dec 14, 2012 at 05:10:06PM -0800, George Marselis a écrit :
> Wow. Do they need sysadmins, as well?
Hi George,
the positions that are not attached to a research project will be the subject
of another open call later. I will also forward it.
Have a nice day,
--
Charles
--
To UNSUBSC
Le Sat, Dec 15, 2012 at 09:39:54AM +0100, olivier.sal...@codeless.fr a écrit :
> Le 12/15/12 9:37 AM, Charles Plessy a écrit :
> > Le Sat, Dec 15, 2012 at 09:15:59AM +0100, olivier.sal...@codeless.fr a
> > écrit :
> >> could you please upgrade libbio-graphics-perl? New GBr
the offer. I caught cold and have a bit of difficulty to focus,
so I would be grateful if you would updated it. May I ask you to import
version 2.30 in the Git repository before version 2.31, and to either send the
build logs or commit them to the "meta" branch ?
Bon week-end,
--
Charles
om the Japanese Society for the Promotion of Science (JSPS),
EMBO, HFSP, etc.
Charles Plessy
--
Charles Plessy, Ph.D. – RIKEN Yokohama Institute
Omics Science Center – Functional Genomics Technology Team
1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045 Japan
Ple
icy.html#lintian-profile-ubuntu
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@
you can have a look at Lintian's vendor customisation
system.
http://wiki.debian.org/Lintian/Spec/VendorCustomization
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.
10.2 | sid | source, all
Cheers,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Archive: http://lists.debian.org/20121114021839.gb6...@falafel.plessy.net
We
> could write a debian/watch file and would have way less burden to get
> the source properly.
Hi all,
If the BamTools developers would push git tags to GitHub, then
it would make tarballs for free. See for instance BEDTools:
https://github.com/arq5x/bedtools/tags
Cheers,
--
Charles
BAM
provides a bam library.
BamTools is the C++ equivalent of samtools, like Picard is the Java
equivalent... The whole naming scheme is not particularly optimal...
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNS
Le Wed, Nov 07, 2012 at 09:52:05PM +0100, Andreas Tille a écrit :
> Hi,
>
> On Wed, Nov 07, 2012 at 01:27:50PM -0700, Michael Crusoe wrote:
> > > Debian packaging at git.debian.org as it is described in Debian Med team
> > > policy[1] which has a lot of advantages that might not obvious at first
>
Le Mon, Nov 05, 2012 at 10:03:40AM -0500, Carlos Borroto a écrit :
> On Sun, Nov 4, 2012 at 8:36 PM, Charles Plessy wrote:
> >
> > I just realised that tophat never made it into Wheezy befor the freeze.
> > Therefore, 2.0.6 is perfectly suitable for Sid.
> >
> >
itself.
By the way, there are related discussion on debian-devel and debian-qa.
http://lists.debian.org/20121104180112.ga3...@upsilon.cc
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to deb
s
> around this packaged software and they might profit from a library
> package. I have no idea whether this is the case for libgtextutils nor
> for RayPlatform.
Hi all,
No other package than fastx-toolkit depends on libgtextutils. But I do not
know for other programs outside Debian.
H
to DM).
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Archive: http://l
said, there is no problem on Debian's side to package RayPlatform
separately. This is what I do with fastx-toolkit and libgtextutils.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med
correcting this beta
version anyway.
Lastly, have you considered adding regression tests using the example data ?
You can see http://dep.debian.net/deps/dep8/ for one framework available in
Debian and Ubuntu.
Have a nice Sunday,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.
nches, the best way retreive the proper "orig.tar.gz" is to downolad the
previous source package from the Debian archive.
Bon dimanche !
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCRIBE, email to debian-med-
> found if I could spell "menstrual"...
Dear Dmitry,
since all packages are maintained by the Debian Med team, do not hesitate
to normalise their descriptions so that they contain the same keywords.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/d
201 - 300 of 1461 matches
Mail list logo
