Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-31 Thread Duy Tin Truong
rk since as you mentioned the changes were merged into the > main repository. > > Thanks! > Lauren > > > On Wed, Aug 31, 2016 at 1:31 AM, Duy Tin Truong <duytin.tru...@gmail.com> > wrote: > >> Hi Andreas, >> >> That is the fork from Lauren and we merged th

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-31 Thread Duy Tin Truong
offline-ish next week but now I know what the correct target for the > > package will be. > > > > Kind regards > > > >Andreas. > > > > On Fri, Aug 19, 2016 at 07:17:25AM +, Duy Tin Truong wrote: > > > Hi Andreas, > > > > > &g

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-19 Thread Duy Tin Truong
> Hi Tin, > > On Fri, Aug 12, 2016 at 03:30:25PM +, Duy Tin Truong wrote: > > > However the hint ot hclust2[1] is helpful. Unfortunately I can not > find > > > any description for this software. Since you might have some > influence on > > > this

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-12 Thread Duy Tin Truong
59 PM Andreas Tille <andr...@an3as.eu> wrote: > > > > > Hi Duy, > > > > > > On Thu, Aug 11, 2016 at 05:03:20AM +, Duy Tin Truong wrote: > > > > We have discussed the plan but unfortunately, we do not have enough > > > > resour

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-12 Thread Duy Tin Truong
-requisites_1 Thanks, Tin On Fri, Aug 12, 2016 at 1:59 PM Andreas Tille <andr...@an3as.eu> wrote: > Hi Duy, > > On Thu, Aug 11, 2016 at 05:03:20AM +, Duy Tin Truong wrote: > > We have discussed the plan but unfortunately, we do not have enough > > resource for that task no

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-10 Thread Duy Tin Truong
;ti...@debian.org> wrote: > Hi again, > > On Sat, Aug 06, 2016 at 01:47:23PM +, Duy Tin Truong wrote: > > Regarding the separation code and data issue, I will discuss with Nicola > > next Monday and let you know. > > any plan how to provide code and dat

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-06 Thread Duy Tin Truong
https://lists.debian.org/debian-med/2016/08/msg00040.html ) about the > separation of code and data. > > Kind regards > > Andreas. > > On Thu, Aug 04, 2016 at 11:48:08AM +, Duy Tin Truong wrote: > > Hi Andreas, > > > > If you can use the latest v

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-04 Thread Duy Tin Truong
ort on the users side to >> > > regenerate the indexes (or even download the data separately via a >> > > script we could provide inside the package). So I could imagine to >> > > package only the metaphlan2 code and provide a script that downloads >> th

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-03 Thread Duy Tin Truong
Hi Andreas, Thanks for you work. I answer your questions as bellow: - some small fixes: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/metaphlan2/trunk/debian/patches/fix_sequence.patch?view=markup -> fixed - some spelling issues https://anonscm.debian.