Re: Third party code inside Ugene

2019-02-05 Thread Yuliya Algaer
Hi Andreas, We updated Phylip to the latest version (3.697). If no regression appears it will be released with the next version of UGENE. https://local.ugene.unipro.ru/tracker/browse/UGENE-6351 Kind regards, Yuliya

Re: Forgot question about licensing of UGENE code (Was: Third party code inside Ugene)

2019-02-05 Thread Yuliya Algaer
Hi Tille, These 2 files have a non-standard license, but I believe the license itself is similar to MIT. The "without fee" text in the license means that we can use this code without any fee. The only limitation is to keep the copyright text. See: * Permission to use, copy, modify and

Re: Third party code inside Ugene

2019-02-04 Thread Yuliya Algaer
ri, Feb 01, 2019 at 08:15:29AM +0700, Yuliya Algaer wrote: Hi Andreas, Lets start with zlib first: it is easier that way we do not use any custom flags, renaming and even have initial support to use system library first. Check this code from ugene_globals.pri: # By default, UGENE uses bundled

Re: Third party code inside Ugene

2019-02-03 Thread Yuliya Algaer
ion. On Fri, Feb 01, 2019 at 08:15:29AM +0700, Yuliya Algaer wrote: Lets start with zlib first: it is easier that way we do not use any custom flags, renaming and even have initial support to use system library first. Check this code from ugene_globals.pri: # By default, UGENE uses bundled z

Re: Third party code inside Ugene

2019-02-03 Thread Yuliya Algaer
_tmp/obj/release/adler32.o'. Stop. make[3]: Leaving directory '/build/ugene-1.31.1+dfsg1/src/libs_3rdparty/zlib' make[2]: *** [Makefile:40: release] Error 2 ... Kind regards Andreas. On Fri, Feb 01, 2019 at 08:15:29AM +0700, Yuliya Algaer wrote: Hi Andreas, Lets start with zlib fir

Re: Third party code inside Ugene

2019-01-31 Thread Yuliya Algaer
Thu, Jan 31, 2019 at 08:58:47AM +0700, Yuliya Algaer wrote: -lugenedbd and -lugenedb: what is the difference between these two? The first one is debug build of the library. The second one is release. All libraries in UGENE are built this way. OK, that's very helpful. In Debian by default

Re: Third party code inside Ugene

2019-01-30 Thread Yuliya Algaer
ave only unofficial experimental build with CMake and have no active plans on it. So we have to use qmake here. Thank you, Yuliya. On 01/30/2019 07:19 PM, Andreas Tille wrote: Hi Yuliya, thanks a lot for your quick reply. On Wed, Jan 30, 2019 at 08:40:45AM +0700, Yuliya Algaer wrote: Here are the flag

Re: Third party code inside Ugene

2019-01-29 Thread Yuliya Algaer
lems with the old version, but it will be correct to upgrade. We will do it with the next release. Thank you. Yuliya. On 01/29/2019 02:45 PM, Andreas Tille wrote: Hi Yuliya, On Tue, Jan 29, 2019 at 07:43:14AM +0700, Yuliya Algaer wrote: Thank you for your letter. Thank you for your quick an

Re: Third party code inside Ugene

2019-01-28 Thread Yuliya Algaer
from our site. Thank you! Kind regards, Yuliya Algaer The UGENE Team On 01/28/2019 07:01 PM, Andreas Tille wrote: Hi, I'd like to update the packaging for Ugene[1]. (BTW Ivan, you are listed as Uploader for this package but you probably do not have access to the new development platform