Re: Autopkgtest fails (Was: Kalign3)

2020-03-20 Thread Andreas Tille
On Sat, Mar 21, 2020 at 01:20:56AM +0530, Nilesh Patra wrote: > On Sat, 21 Mar 2020, 01:16 Pranav Ballaney, > wrote: > > Thank you. I've added the remaining tests as well. Please review and > > sponsor. > > Hi, > I'm not a DD (yet), have CC'ed to Andreas so it gets uploaded. Uploaded. Thanks to

Re: Autopkgtest fails (Was: Kalign3)

2020-03-20 Thread Nilesh Patra
On Sat, 21 Mar 2020, 01:16 Pranav Ballaney, wrote: > On Fri, Mar 20, 2020 at 1:38 AM Nilesh Patra wrote: > >> Just checked. My best guess here is that -i invokes interaction, which >> won't work in a chroot. >> The best way to pass input inside a chroot is via either STDIN, or >> redirecting inp

Re: Autopkgtest fails (Was: Kalign3)

2020-03-20 Thread Pranav Ballaney
On Fri, Mar 20, 2020 at 1:38 AM Nilesh Patra wrote: > Just checked. My best guess here is that -i invokes interaction, which > won't work in a chroot. > The best way to pass input inside a chroot is via either STDIN, or > redirecting input with pipes. > > Also > Just a suggestion: Autopkgtests l

Re: Autopkgtest fails (Was: Kalign3)

2020-03-19 Thread Nilesh Patra
On Fri, 20 Mar 2020, 01:20 Pranav Ballaney, wrote: > Hi Andreas, > I've added some more tests to kalign, but there's a slight problem. > As specified in the README file, kalign supports two ways of taking input: > one is through stdin and the other through the -i flag (or even without it). > For

Re: Autopkgtest fails (Was: Kalign3)

2020-03-19 Thread Nilesh Patra
Hi, On Fri, 20 Mar 2020, 01:20 Pranav Ballaney, wrote: > Hi Andreas, > I've added some more tests to kalign, but there's a slight problem. > As specified in the README file, kalign supports two ways of taking input: > one is through stdin and the other through the -i flag (or even without it). >

Re: Autopkgtest fails (Was: Kalign3)

2020-03-19 Thread Pranav Ballaney
ailed. (run_kalign.c line 353) Regards, Pranav On Thu, Mar 19, 2020 at 10:18 PM Andreas Tille wrote: > Hi, > > On Thu, Mar 19, 2020 at 11:49:28AM +0100, Steffen Möller wrote: > > > > > https://salsa.debian.org/med-team/kalign > > > > I expected a kalign3 pa

Autopkgtest fails (Was: Kalign3)

2020-03-19 Thread Andreas Tille
Hi, On Thu, Mar 19, 2020 at 11:49:28AM +0100, Steffen Möller wrote: > > > https://salsa.debian.org/med-team/kalign > > I expected a kalign3 package and then did not investigate any further. > Sorry. It almost happened :o) I had a look and was running routine-update on i

Re: Kalign3

2020-03-19 Thread Steffen Möller
ign... However, the repository's canonical page surely shows my commits of yesterday... https://salsa.debian.org/med-team/kalign I expected a kalign3 package and then did not investigate any further. Sorry. It almost happened :o) Best, Steffen

Re: Kalign3

2020-03-18 Thread Charles Plessy
Le Thu, Mar 19, 2020 at 12:29:05AM +0100, Steffen Möller a écrit : > > I checked but > https://salsa.debian.org/med-team?utf8=%E2%9C%93&filter=kalign does not > show anything newish. Hi Steffen, I do not know why this page indicates "3 weeks ago" for kalign... However, the repository's canonical

Re: Kalign3

2020-03-18 Thread Steffen Möller
Hi Charles, On 18.03.20 14:26, Charles Plessy wrote: Hello everybody, Kalign3 was published a few days ago in Bioinformatics... I have pushed the new upstream release and a bunch of changes to Salsa. If somebody is eager to continue the work while I sleep, feel free :) I checked but https

Kalign3

2020-03-18 Thread Charles Plessy
Hello everybody, Kalign3 was published a few days ago in Bioinformatics... I have pushed the new upstream release and a bunch of changes to Salsa. If somebody is eager to continue the work while I sleep, feel free :) Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http