Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Andreas Tille
Hi Fabian, On Tue, Apr 19, 2016 at 02:59:15PM +0200, Fabian Klötzl wrote: > >>> Cool. Just ping me for sponsering. > >> > >> I guess it makes sense, to move the packaging to git, first. > > > > Huh? Its at > > > > git://anonscm.debian.org/debian-med/mugsy.git > > Yeah, but you ported

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
On 19.04.2016 14:53, Andreas Tille wrote: > On Tue, Apr 19, 2016 at 02:40:34PM +0200, Fabian Klötzl wrote: I have some extra patches for those tools, making them up to ten times faster. Will commit in due course. >>> >>> Cool. Just ping me for sponsering. >> >> I guess it makes sense,

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Andreas Tille
On Tue, Apr 19, 2016 at 02:40:34PM +0200, Fabian Klötzl wrote: > > Yeah, I was lucky that “improving mugsy” was supposed to be my next big > project at work. Little did we know I had to get past “compiling” first. :-) > >> I have some extra patches for those tools, making them up to ten times

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
Hi, On 19.04.2016 14:03, Andreas Tille wrote: > On Tue, Apr 19, 2016 at 12:29:59PM +0200, Fabian Klötzl wrote: >> Hi Andreas, >> >> I spent the last few weeks meandering in the murky marshes of the mugsy >> source code; It is a monstrosity. >> >> [ … lots of whining … ] > > Thanks a lot for the

Re: Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-19 Thread Fabian Klötzl
Hi Andreas, I spent the last few weeks meandering in the murky marshes of the mugsy source code; It is a monstrosity. Before answering to your individual points I'd like to stress that I *literally* spend days trying to compile mugsy with seqan 1.3 which comes with Ubuntu 14.04 LTS. A hundred

Mugsy (Was: Seqan knowledge needed (Was: Help needed in C++ / seqan issue))

2016-04-05 Thread Andreas Tille
Hi, I think I need to come back to this nearly one year old mail which I seem to have left uncommented. It concerns mugsy[1]: On Sat, 25 Apr 2015 08:52:52 +0200 Andreas Tille wrote: > On Sat, Apr 25, 2015 at 05:30:39AM +0300, johnhom...@gmail.com wrote: > > Here's my take on mugsy issues. I