On 26/05/2021 16:41, Tony Travis wrote:
[...]
I will also be giving due credit to Debian-Med for packaging all the
software I'm now using as "Bio-Linux" = Ubuntu-MATE 20.04 + med-bio.
Hi, Debian-Med Team.
I gave due credit for your hard work packaging bioinformatics software
today in my
On 23/07/2020 22:31, Tony Travis wrote:
[...]
I just want to make sure you will not create the false impression to
naive users that installing med-* is needed to just run pique (which
meanwhile was accepted in unstable).
I am encouraging former Bio-Linux 8.0.8 users to upgrade to Ubuntu-MATE
On 23/07/2020 13:37, Andreas Tille wrote:
[...]
The "pique-input" script should be running /usr/lib/eigensoft/smartpca, not
/usr/bin/smartpca and my version does:
I'll check this. However, in principle I do not consider it the best
idea to use some program that is private to eigensoft and
Hi Tony,
On Thu, Jul 23, 2020 at 11:41:40AM +0100, Tony Travis wrote:
> On 23/07/2020 07:56, Andreas Tille wrote:
> > > > Create sativas_GWAS.covar file...
> > > > smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
> > > > OOPS -i flag not specified at /usr/bin/smartpca line 21.
> > > >
On 23/07/2020 07:56, Andreas Tille wrote:
Hi Tony,
On Wed, Jul 22, 2020 at 11:46:03PM +0100, Tony Travis wrote:
Analysis finished: Mon Jul 20 13:56:47 2020
Create sativas_GWAS.covar file...
smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
OOPS -i flag not specified at
Hi Tony,
On Wed, Jul 22, 2020 at 11:46:03PM +0100, Tony Travis wrote:
> > Analysis finished: Mon Jul 20 13:56:47 2020
> >
> > Create sativas_GWAS.covar file...
> > smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
> > OOPS -i flag not specified at /usr/bin/smartpca line 21.
> > pique:
On 20/07/2020 13:03, Andreas Tille wrote:
[...]
OK, just ITPed package. BTW, I was running make in the tests dir and
it ends with:
Analysis finished: Mon Jul 20 13:56:47 2020
Create sativas_GWAS.covar file...
smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
OOPS -i flag not specified
On Mon, Jul 20, 2020 at 11:33:18AM +0100, Tony Travis wrote:
> On 20/07/2020 10:46, Tony Travis wrote:
> > [...]
> > PIQUE is a software pipeline for performing genome wide association
> > studies (GWAS). The main function of PIQUE is to provide ‘convenience’
> > wrappers that allow users to
On 20/07/2020 10:46, Tony Travis wrote:
[...]
PIQUE is a software pipeline for performing genome wide association
studies (GWAS). The main function of PIQUE is to provide ‘convenience’
wrappers that allow users to perform GWAS using the popular program
EMMAX (Kang et al., 2010) without the
On 03/07/2019 09:18, Tony Travis wrote:
On 02/07/2019 15:08, Andreas Tille wrote:
Hi Tony,
On Wed, Mar 20, 2019 at 04:15:11PM +0100, Tony Travis wrote:
2. Is there any description of PIQUE that could be used as long
description for the package. I've checked doc/pique_manual.odt
On 02/07/2019 15:08, Andreas Tille wrote:
Hi Tony,
On Wed, Mar 20, 2019 at 04:15:11PM +0100, Tony Travis wrote:
2. Is there any description of PIQUE that could be used as long
description for the package. I've checked doc/pique_manual.odt
but despite its filename it says it
Hi Tony,
On Wed, Mar 20, 2019 at 04:15:11PM +0100, Tony Travis wrote:
> >2. Is there any description of PIQUE that could be used as long
> > description for the package. I've checked doc/pique_manual.odt
> > but despite its filename it says it is the ParSNP manual
> > (btw,
On 20/03/2019 16:04, Andreas Tille wrote:
Hi Tony,
On Wed, Mar 20, 2019 at 01:48:05PM +0100, Andreas Tille wrote:
Yes, that would be great if you're willing, but I would struggle to do it on
my own despite you explaining to me several times what to do...
Its a pleasure for me to look at this
Hi Tony,
On Wed, Mar 20, 2019 at 01:48:05PM +0100, Andreas Tille wrote:
> > Yes, that would be great if you're willing, but I would struggle to do it on
> > my own despite you explaining to me several times what to do...
>
> Its a pleasure for me to look at this once you fixed
>
>
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