Re: Scala error when trying to build latest version of pilon

2021-12-18 Thread Pierre Gruet
Hi Andreas, On 18/12/2021 08:52, Andreas Tille wrote: Hi Pierre, Am Fri, Dec 17, 2021 at 11:27:50PM +0100 schrieb Pierre Gruet: I have just uploaded latest upstream version of pilon to unstable, together with a fix for the scala issues showing up. Normally we would have had to update scala

Re: Scala error when trying to build latest version of pilon

2021-12-17 Thread Andreas Tille
Hi Pierre, Am Fri, Dec 17, 2021 at 11:27:50PM +0100 schrieb Pierre Gruet: > I have just uploaded latest upstream version of pilon to unstable, together > with a fix for the scala issues showing up. Normally we would have had to > update scala from 2.11 to 2.13, but here the fix was very short to

Re: Scala error when trying to build latest version of pilon

2021-12-17 Thread Pierre Gruet
Hi Andreas, On 09/09/2021 14:21, Andreas Tille wrote: Hi Pierre, thanks a lot for your educated answer. On Thu, Sep 09, 2021 at 12:48:33PM +0200, Pierre Gruet wrote: Any hint how to fix this? Well, /maybe/ we could patch this last pilon version to use Scala 2.11 with it... but I see there

Re: Scala error when trying to build latest version of pilon

2021-09-09 Thread Andreas Tille
Hi Pierre, thanks a lot for your educated answer. On Thu, Sep 09, 2021 at 12:48:33PM +0200, Pierre Gruet wrote: > > Any hint how to fix this? > > Well, /maybe/ we could patch this last pilon version to use Scala 2.11 with > it... but I see there were quite a lot of changed in pilon seemingly

Re: Scala error when trying to build latest version of pilon

2021-09-09 Thread Pierre Gruet
Hi Andreas, Le 09/09/2021 à 08:31, Andreas Tille a écrit : Hi Pierre (and others) when trying to build the latest version of pilon[1] I get: ... scalac -classpath /usr/share/java/htsjdk.jar -d pilon.jar src/main/scala/org/broadinstitute/pilon/*