Re: salmon status in salsa

Am Sat, Nov 05, 2022 at 11:09:09PM +0100 schrieb Étienne Mollier: > > Further inspection of the backtrace shows the linker was > confused between the embedded and system version of libcereal. > Everything goes back to normal when the libcereal copy embedded > in pufferfish emb

Re: salmon status in salsa

Andreas Tille, on 2022-11-05: > Am Sat, Nov 05, 2022 at 05:36:16PM +0100 schrieb Étienne Mollier: > > So I have been spending some time to try to put salmon back in > > working shape. The code currently available in Salsa[1] builds > > through, but fails it's test suite. Sai

Re: salmon status in salsa

Hi Étienne, Am Sat, Nov 05, 2022 at 05:36:16PM +0100 schrieb Étienne Mollier: > So I have been spending some time to try to put salmon back in > working shape. The code currently available in Salsa[1] builds > through, but fails it's test suite. Said test is fortunately > straightfo

salmon status in salsa

Good day, So I have been spending some time to try to put salmon back in working shape. The code currently available in Salsa[1] builds through, but fails it's test suite. Said test is fortunately straightforward to run, and from further analysis with the debugger and test rebuilds

Re: Additional info: can not see update note: Salmon

Yes, see https://salsa.debian.org/med-team/salmon/-/blob/master/debian/changelog#L10 for the latest TODO notice about the new puffefish dependency On Wed, Apr 8, 2020 at 6:14 PM Ben Tris wrote: > https://tracker.debian.org/pkg/salmon > > This package seems regularly updated n

Re: Could not build salmon - rapmap interactions?!?

Hi Steffen, On Thu, Sep 26, 2019 at 09:42:36PM +0200, Steffen Möller wrote: > I got stuck while trying to get salmon to recompile and/or update to the > new .14.1 version that is out. After some time I came to understand that > the problem is the deep interaction of the salmo

Could not build salmon - rapmap interactions?!?

Hello, I got stuck while trying to get salmon to recompile and/or update to the new .14.1 version that is out. After some time I came to understand that the problem is the deep interaction of the salmon package with the rapmap source tree that apparently should be of the same version. Another

Re: Salmon

Am Samstag, den 16.12.2017, 10:28 +0100 schrieb Andreas Tille: > Hi Gert, > > I once injected version 0.8.0 where I ended up with  > >   /usr/bin/cc  -g -O2 -fdebug-prefix-map=/build/salmon-0.8.0+ds1=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time >

Re: Salmon

n-7.2". At first thanks a lot for fixing this. I once injected version 0.8.0 where I ended up with /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/salmon-0.8.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=pthread_ cr

Salmon

Hi all, since in the build-tree there is also a version 0.8, and I had to give up fixing that version - there was some include "FrugalBooMap.hpp" missing, I've fixed the RC bug in an new branch: "version-7.2". Best, Gert

Whoever feels a need to push new version of salmon (0.8.0) to unstable please continue from Git

Hi, since the window for Stretch is closing tomorrow I intended to push all possible programs to its latest version. Salmon yesterday released version 0.8.0 and I tried to fight through our quilt patching hell. I'm not sure whether I have added a mistake myself or whether some additional patch

Bug#800339: marked as done (ITP: salmon -- wicked-fast transcript quantification from RNA-seq data)

Your message dated Fri, 05 Feb 2016 23:05:20 + with message-id <e1arpri-0004fw...@franck.debian.org> and subject line Bug#800339: fixed in salmon 0.4.2+ds1-1 has caused the Debian Bug report #800339, regarding ITP: salmon -- wicked-fast transcript quantification from RNA-seq data to be

Re: Request for review & upload: salmon

Thank you! Sâm, 30 ian. 2016, 22:56, Andreas Tille a scris: > On Sat, Jan 30, 2016 at 06:32:54PM +, Michael Crusoe wrote: > > > > Heh, a timely mistake. Fixed. > > So its uploaded now (after fixing yaml syntax). > > Thanks for your work on this > > Andreas. > > -- >

Re: Request for review & upload: salmon

On Sat, Jan 30, 2016 at 8:10 PM Andreas Tille wrote: > On Sat, Jan 30, 2016 at 05:51:59PM +, Michael Crusoe wrote: > > The Lintian warning is due to the eigen3 library; I've filed a bug about > > that. > > Probably a lintian check for an empty debian/upstream/metadata

Re: Request for review & upload: salmon

On Sat, Jan 30, 2016 at 05:51:59PM +, Michael Crusoe wrote: > The Lintian warning is due to the eigen3 library; I've filed a bug about > that. Probably a lintian check for an empty debian/upstream/metadata should be craftet. If there is no reference for this software please remove the file.

Bug#800339: ITP: salmon -- wicked-fast transcript quantification from RNA-seq data

Package: wnpp Owner: "Debian Med Team" <debian-med@lists.debian.org> Severity: wishlist X-Debbugs-CC: debian-med@lists.debian.org * Package name: salmon Version : 0.4.2 Upstream Author : Rob Patro, Carl Kingsford and Steve Mount * URL : https://github