Re: cyvcf2 issue with htslib

2018-12-21 Thread Liubov Chuprikova
Hi Andreas, On Mon, 17 Dec 2018 at 20:25, Andreas Tille wrote: > On Mon, Dec 17, 2018 at 06:00:59PM +0100, Liubov Chuprikova wrote: > > > Could someone please have a look? > > > > I have started to investigate this: the fail is related to recent > upstream > > changes [1] and [2]. I have no

Re: cyvcf2 issue with htslib

2018-12-17 Thread Andreas Tille
Hi Liubov, On Mon, Dec 17, 2018 at 06:00:59PM +0100, Liubov Chuprikova wrote: > > Could someone please have a look? > > I have started to investigate this: the fail is related to recent upstream > changes [1] and [2]. I have no time to look deeper into this right now, > maybe at the end of the

Re: cyvcf2 issue with htslib

2018-12-17 Thread Liubov Chuprikova
Hi Andreas, On Sat, 15 Dec 2018 at 08:51, Andreas Tille wrote: > > upstream has closed issue #91[1] and it should work with Debian > packaged htslib. Thus I've added libhts-dev to Build-Depends but the build finally fails with > > ... > I: pybuild base:217: cd >

cyvcf2 issue with htslib

2018-12-14 Thread Andreas Tille
Hi, upstream has closed issue #91[1] and it should work with Debian packaged htslib. Thus I've added libhts-dev to Build-Depends but the build finally fails with ... I: pybuild base:217: cd /build/cyvcf2-0.10.2/.pybuild/cpython2_2.7_cyvcf2/build; python2.7 -m nose -v. Failure: ImportError